Apoptotic tumor cell-derived microRNA-375 uses CD36 to alter the tumor-associated macrophage phenotype
Frank, Ann-Christin, Ebersberger, Stefanie, Fink, Annika F., Lampe, Sebastian, Weigert, Andreas, Schmid, Tobias, Ebersberger, Ingo, Syed, Shahzad Nawaz, Brüne, Bernhard
Published in Nature communications (08.03.2019)
Published in Nature communications (08.03.2019)
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Journal Article
The plant heat stress transcription factor (Hsf) family: Structure, function and evolution
Scharf, Klaus-Dieter, Berberich, Thomas, Ebersberger, Ingo, Nover, Lutz
Published in Biochimica et biophysica acta (01.02.2012)
Published in Biochimica et biophysica acta (01.02.2012)
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Journal Article
Feature architecture aware phylogenetic profiling indicates a functional diversification of type IVa pili in the nosocomial pathogen Acinetobacter baumannii
Iruegas, Ruben, Pfefferle, Katharina, Göttig, Stephan, Averhoff, Beate, Ebersberger, Ingo
Published in PLoS genetics (27.07.2023)
Published in PLoS genetics (27.07.2023)
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Journal Article
HaMStR: profile hidden markov model based search for orthologs in ESTs
Ebersberger, Ingo, Strauss, Sascha, von Haeseler, Arndt
Published in BMC evolutionary biology (08.07.2009)
Published in BMC evolutionary biology (08.07.2009)
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Journal Article
Acinetobacter baumannii Virulence Is Mediated by the Concerted Action of Three Phospholipases D
Stahl, Julia, Bergmann, Holger, Göttig, Stephan, Ebersberger, Ingo, Averhoff, Beate
Published in PloS one (17.09.2015)
Published in PloS one (17.09.2015)
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Journal Article
Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity
Linker, Stephanie M, Urban, Lara, Clark, Stephen J, Chhatriwala, Mariya, Amatya, Shradha, McCarthy, Davis J, Ebersberger, Ingo, Vallier, Ludovic, Reik, Wolf, Stegle, Oliver, Bonder, Marc Jan
Published in Genome Biology (11.02.2019)
Published in Genome Biology (11.02.2019)
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Journal Article
Adjustment of photosynthetic activity to drought and fluctuating light in wheat
Grieco, Michele, Roustan, Valentin, Dermendjiev, Georgi, Rantala, Sanna, Jain, Arpit, Leonardelli, Manuela, Neumann, Kerstin, Berger, Vitus, Engelmeier, Doris, Bachmann, Gert, Ebersberger, Ingo, Aro, Eva‐Mari, Weckwerth, Wolfram, Teige, Markus
Published in Plant, cell and environment (01.06.2020)
Published in Plant, cell and environment (01.06.2020)
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Journal Article
Evolutionarily stable gene clusters shed light on the common grounds of pathogenicity in the Acinetobacter calcoaceticus-baumannii complex
Djahanschiri, Bardya, Di Venanzio, Gisela, Distel, Jesus S, Breisch, Jennifer, Dieckmann, Marius Alfred, Goesmann, Alexander, Averhoff, Beate, Göttig, Stephan, Wilharm, Gottfried, Feldman, Mario F, Ebersberger, Ingo
Published in PLoS genetics (01.06.2022)
Published in PLoS genetics (01.06.2022)
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Journal Article
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
Bengtsson‐Palme, Johan, Ryberg, Martin, Hartmann, Martin, Branco, Sara, Wang, Zheng, Godhe, Anna, Wit, Pierre, Sánchez‐García, Marisol, Ebersberger, Ingo, Sousa, Filipe, Amend, Anthony, Jumpponen, Ari, Unterseher, Martin, Kristiansson, Erik, Abarenkov, Kessy, Bertrand, Yann J. K., Sanli, Kemal, Eriksson, K. Martin, Vik, Unni, Veldre, Vilmar, Nilsson, R. Henrik, Bunce, Michael
Published in Methods in ecology and evolution (01.10.2013)
Published in Methods in ecology and evolution (01.10.2013)
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Journal Article
Advances and Applications in the Quest for Orthologs
Glover, Natasha, Dessimoz, Christophe, Ebersberger, Ingo, Forslund, Sofia K, Gabaldón, Toni, Huerta-Cepas, Jaime, Martin, Maria-Jesus, Muffato, Matthieu, Patricio, Mateus, Pereira, Cécile, da Silva, Alan Sousa, Wang, Yan, Sonnhammer, Erik, Thomas, Paul D
Published in Molecular biology and evolution (01.10.2019)
Published in Molecular biology and evolution (01.10.2019)
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Journal Article
Conference Proceeding
PhyloProfile: dynamic visualization and exploration of multi-layered phylogenetic profiles
Tran, Ngoc-Vinh, Greshake Tzovaras, Bastian, Ebersberger, Ingo
Published in Bioinformatics (01.09.2018)
Published in Bioinformatics (01.09.2018)
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Journal Article
The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly(A) translation
Hildebrandt, Andrea, Brüggemann, Mirko, Rücklé, Cornelia, Boerner, Susan, Heidelberger, Jan B, Busch, Anke, Hänel, Heike, Voigt, Andrea, Möckel, Martin M, Ebersberger, Stefanie, Scholz, Anica, Dold, Annabelle, Schmid, Tobias, Ebersberger, Ingo, Roignant, Jean-Yves, Zarnack, Kathi, König, Julian, Beli, Petra
Published in Genome Biology (22.10.2019)
Published in Genome Biology (22.10.2019)
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Journal Article
Human MLL/KMT2A gene exhibits a second breakpoint cluster region for recurrent MLL–USP2 fusions
Meyer, Claus, Lopes, Bruno A., Caye-Eude, Aurélie, Cavé, Hélène, Arfeuille, Chloé, Cuccuini, Wendy, Sutton, Rosemary, Venn, Nicola C., Oh, Seung Hwan, Tsaur, Grigory, Escherich, Gabriele, Feuchtinger, Tobias, Kosasih, Hansen J., Khaw, Seong L., Ekert, Paul G., Pombo-de-Oliveira, Maria S., Bidet, Audrey, Djahanschiri, Bardya, Ebersberger, Ingo, Zaliova, Marketa, Zuna, Jan, Zermanova, Zuzana, Juvonen, Vesa, Grümayer, Renate Panzer, Fazio, Grazia, Cazzaniga, Gianni, Larghero, Patrizia, Emerenciano, Mariana, Marschalek, Rolf
Published in Leukemia (01.09.2019)
Published in Leukemia (01.09.2019)
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Journal Article
Tracing Eukaryotic Ribosome Biogenesis Factors Into the Archaeal Domain Sheds Light on the Evolution of Functional Complexity
Birikmen, Mehmet, Bohnsack, Katherine E., Tran, Vinh, Somayaji, Sharvari, Bohnsack, Markus T., Ebersberger, Ingo
Published in Frontiers in microbiology (16.09.2021)
Published in Frontiers in microbiology (16.09.2021)
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Journal Article
The evolution of the ribosome biogenesis pathway from a yeast perspective
Ebersberger, Ingo, Simm, Stefan, Leisegang, Matthias S, Schmitzberger, Peter, Mirus, Oliver, von Haeseler, Arndt, Bohnsack, Markus T, Schleiff, Enrico
Published in Nucleic acids research (01.02.2014)
Published in Nucleic acids research (01.02.2014)
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Journal Article
HEATSTER: A Database and Web Server for Identification and Classification of Heat Stress Transcription Factors in Plants
Berz, Jannik, Simm, Stefan, Schuster, Sebastian, Scharf, Klaus-Dieter, Schleiff, Enrico, Ebersberger, Ingo
Published in Bioinformatics and biology insights (2019)
Published in Bioinformatics and biology insights (2019)
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Journal Article
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects
Dell'Ampio, Emiliano, Meusemann, Karen, Szucsich, Nikolaus U, Peters, Ralph S, Meyer, Benjamin, Borner, Janus, Petersen, Malte, Aberer, Andre J, Stamatakis, Alexandros, Walzl, Manfred G, Minh, Bui Quang, von Haeseler, Arndt, Ebersberger, Ingo, Pass, Günther, Misof, Bernhard
Published in Molecular biology and evolution (01.01.2014)
Published in Molecular biology and evolution (01.01.2014)
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Journal Article
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen
Greshake Tzovaras, Bastian, Segers, Francisca H I D, Bicker, Anne, Dal Grande, Francesco, Otte, Jürgen, Anvar, Seyed Yahya, Hankeln, Thomas, Schmitt, Imke, Ebersberger, Ingo
Published in Genome biology and evolution (01.04.2020)
Published in Genome biology and evolution (01.04.2020)
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Journal Article
Genome-Wide RNAi Screen Identifies Genes Involved in Intestinal Pathogenic Bacterial Infection
Cronin, Shane J.F, Nehme, Nadine T, Limmer, Stefanie, Liegeois, Samuel, Pospisilik, J. Andrew, Schramek, Daniel, Leibbrandt, Andreas, Simoes, Ricardo de Matos, Gruber, Susanne, Puc, Urszula, Ebersberger, Ingo, Zoranovic, Tamara, Neely, G. Gregory, von Haeseler, Arndt, Ferrandon, Dominique, Penninger, Josef M
Published in Science (American Association for the Advancement of Science) (17.07.2009)
Published in Science (American Association for the Advancement of Science) (17.07.2009)
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Journal Article
InvL, an Invasin-Like Adhesin, Is a Type II Secretion System Substrate Required for Acinetobacter baumannii Uropathogenesis
Jackson-Litteken, Clay D, Di Venanzio, Gisela, Le, Nguyen-Hung, Scott, Nichollas E, Djahanschiri, Bardya, Distel, Jesus S, Pardue, Evan J, Ebersberger, Ingo, Feldman, Mario F
Published in mBio (28.06.2022)
Published in mBio (28.06.2022)
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Journal Article