Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers
Grüning, Björn A, Rasche, Eric, Rebolledo-Jaramillo, Boris, Eberhard, Carl, Houwaart, Torsten, Chilton, John, Coraor, Nate, Backofen, Rolf, Taylor, James, Nekrutenko, Anton
Published in PLoS computational biology (01.05.2017)
Published in PLoS computational biology (01.05.2017)
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Journal Article
Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries
Engelthaler, David M, Kelley, Erin, Driebe, Elizabeth M, Bowers, Jolene, Eberhard, Carl F, Trujillo, Jesse, Decruyenaere, Frederic, Schupp, James M, Mossong, Joel, Keim, Paul, Even, Jos
Published in BMC infectious diseases (23.07.2013)
Published in BMC infectious diseases (23.07.2013)
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Journal Article
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
Afgan, Enis, Baker, Dannon, van den Beek, Marius, Blankenberg, Daniel, Bouvier, Dave, Čech, Martin, Chilton, John, Clements, Dave, Coraor, Nate, Eberhard, Carl, Grüning, Björn, Guerler, Aysam, Hillman-Jackson, Jennifer, Von Kuster, Greg, Rasche, Eric, Soranzo, Nicola, Turaga, Nitesh, Taylor, James, Nekrutenko, Anton, Goecks, Jeremy
Published in Nucleic acids research (08.07.2016)
Published in Nucleic acids research (08.07.2016)
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Journal Article
Web-based visual analysis for high-throughput genomics
Goecks, Jeremy, Eberhard, Carl, Too, Tomithy, Nekrutenko, Anton, Taylor, James
Published in BMC genomics (13.06.2013)
Published in BMC genomics (13.06.2013)
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Journal Article
Dissemination of scientific software with Galaxy ToolShed
Blankenberg, Daniel, Von Kuster, Gregory, Bouvier, Emil, Baker, Dannon, Afgan, Enis, Stoler, Nicholas, Taylor, James, Nekrutenko, Anton
Published in Genome biology (20.02.2014)
Published in Genome biology (20.02.2014)
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Journal Article
Enhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter
Grüning, Björn, Rasche, Eric, Boris Rebolledo Jaramillo, Eberhard, Carl, Houwaart, Torsten, Chilton, John, Coraor, Nathan, Backofen, Rolf, Taylor, James, Nekrutenko, Anton
Published in bioRxiv (22.09.2016)
Published in bioRxiv (22.09.2016)
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Paper
Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analyses
Goecks, J., Nekrutenko, A., Taylor, J.
Published in 2012 IEEE 8th International Conference on E-Science (01.10.2012)
Published in 2012 IEEE 8th International Conference on E-Science (01.10.2012)
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Conference Proceeding