Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
Kamburov, Atanas, Cavill, Rachel, Ebbels, Timothy M. D., Herwig, Ralf, Keun, Hector C.
Published in Bioinformatics (15.10.2011)
Published in Bioinformatics (15.10.2011)
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Journal Article
Power Analysis and Sample Size Determination in Metabolic Phenotyping
Blaise, Benjamin J, Correia, Gonçalo, Tin, Adrienne, Young, J. Hunter, Vergnaud, Anne-Claire, Lewis, Matthew, Pearce, Jake T. M, Elliott, Paul, Nicholson, Jeremy K, Holmes, Elaine, Ebbels, Timothy M. D
Published in Analytical chemistry (Washington) (17.05.2016)
Published in Analytical chemistry (Washington) (17.05.2016)
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Journal Article
Urinary metabolic signatures of human adiposity
Elliott, Paul, Posma, Joram M, Chan, Queenie, Garcia-Perez, Isabel, Wijeyesekera, Anisha, Bictash, Magda, Ebbels, Timothy M D, Ueshima, Hirotsugu, Zhao, Liancheng, van Horn, Linda, Daviglus, Martha, Stamler, Jeremiah, Holmes, Elaine, Nicholson, Jeremy K
Published in Science translational medicine (29.04.2015)
Published in Science translational medicine (29.04.2015)
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Journal Article
Reliability of plasma polar metabolite concentrations in a large-scale cohort study using capillary electrophoresis-mass spectrometry
Harada, Sei, Hirayama, Akiyoshi, Chan, Queenie, Kurihara, Ayako, Fukai, Kota, Iida, Miho, Kato, Suzuka, Sugiyama, Daisuke, Kuwabara, Kazuyo, Takeuchi, Ayano, Akiyama, Miki, Okamura, Tomonori, Ebbels, Timothy M D, Elliott, Paul, Tomita, Masaru, Sato, Asako, Suzuki, Chizuru, Sugimoto, Masahiro, Soga, Tomoyoshi, Takebayashi, Toru
Published in PloS one (18.01.2018)
Published in PloS one (18.01.2018)
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Journal Article
Predictive modelling using pathway scores: robustness and significance of pathway collections
Segura-Lepe, Marcelo P, Keun, Hector C, Ebbels, Timothy M D
Published in BMC bioinformatics (04.11.2019)
Published in BMC bioinformatics (04.11.2019)
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Journal Article
Statistical analysis in metabolic phenotyping
Blaise, Benjamin J, Correia, Gonçalo D S, Haggart, Gordon A, Surowiec, Izabella, Sands, Caroline, Lewis, Matthew R, Pearce, Jake T M, Trygg, Johan, Nicholson, Jeremy K, Holmes, Elaine, Ebbels, Timothy M D
Published in Nature protocols (01.09.2021)
Published in Nature protocols (01.09.2021)
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Journal Article
Optimizing the Use of Quality Control Samples for Signal Drift Correction in Large-Scale Urine Metabolic Profiling Studies
Kamleh, Muhammad Anas, Ebbels, Timothy M. D, Spagou, Konstantina, Masson, Perrine, Want, Elizabeth J
Published in Analytical chemistry (Washington) (20.03.2012)
Published in Analytical chemistry (Washington) (20.03.2012)
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Journal Article
Optimization and Evaluation of Metabolite Extraction Protocols for Untargeted Metabolic Profiling of Liver Samples by UPLC-MS
Masson, Perrine, Alves, Alexessander Couto, Ebbels, Timothy M. D, Nicholson, Jeremy K, Want, Elizabeth J
Published in Analytical chemistry (Washington) (15.09.2010)
Published in Analytical chemistry (Washington) (15.09.2010)
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Journal Article
Optimized Preprocessing of Ultra-Performance Liquid Chromatography/Mass Spectrometry Urinary Metabolic Profiles for Improved Information Recovery
Veselkov, Kirill A, Vingara, Lisa K, Masson, Perrine, Robinette, Steven L, Want, Elizabeth, Li, Jia V, Barton, Richard H, Boursier-Neyret, Claire, Walther, Bernard, Ebbels, Timothy M, Pelczer, István, Holmes, Elaine, Lindon, John C, Nicholson, Jeremy K
Published in Analytical chemistry (Washington) (01.08.2011)
Published in Analytical chemistry (Washington) (01.08.2011)
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Journal Article
Use cases, best practice and reporting standards for metabolomics in regulatory toxicology
Viant, Mark R, Ebbels, Timothy M D, Beger, Richard D, Ekman, Drew R, Epps, David J T, Kamp, Hennicke, Leonards, Pim E G, Loizou, George D, MacRae, James I, van Ravenzwaay, Bennard, Rocca-Serra, Philippe, Salek, Reza M, Walk, Tilmann, Weber, Ralf J M
Published in Nature communications (10.07.2019)
Published in Nature communications (10.07.2019)
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Journal Article
Statistical Correlations between NMR Spectroscopy and Direct Infusion FT-ICR Mass Spectrometry Aid Annotation of Unknowns in Metabolomics
Hao, Jie, Liebeke, Manuel, Sommer, Ulf, Viant, Mark R, Bundy, Jacob G, Ebbels, Timothy M. D
Published in Analytical chemistry (Washington) (01.03.2016)
Published in Analytical chemistry (Washington) (01.03.2016)
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Journal Article
Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts
Nicholson, Jeremy K, Beckonert, Olaf, Keun, Hector C, Ebbels, Timothy M D, Bundy, Jacob, Holmes, Elaine, Lindon, John C
Published in Nature protocols (01.11.2007)
Published in Nature protocols (01.11.2007)
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Journal Article
Optimized Phenotypic Biomarker Discovery and Confounder Elimination via Covariate-Adjusted Projection to Latent Structures from Metabolic Spectroscopy Data
Posma, Joram M, Garcia-Perez, Isabel, Ebbels, Timothy M. D, Lindon, John C, Stamler, Jeremiah, Elliott, Paul, Holmes, Elaine, Nicholson, Jeremy K
Published in Journal of proteome research (06.04.2018)
Published in Journal of proteome research (06.04.2018)
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