Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic
Bowers, Jolene R, Kitchel, Brandon, Driebe, Elizabeth M, MacCannell, Duncan R, Roe, Chandler, Lemmer, Darrin, de Man, Tom, Rasheed, J Kamile, Engelthaler, David M, Keim, Paul, Limbago, Brandi M
Published in PloS one (21.07.2015)
Published in PloS one (21.07.2015)
Get full text
Journal Article
Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation
Colman, Rebecca E, Mace, Aurélien, Seifert, Marva, Hetzel, Jonathan, Mshaiel, Haifa, Suresh, Anita, Lemmer, Darrin, Engelthaler, David M, Catanzaro, Donald G, Young, Amanda G, Denkinger, Claudia M, Rodwell, Timothy C
Published in PLoS medicine (30.04.2019)
Published in PLoS medicine (30.04.2019)
Get full text
Journal Article
Metagenomic Characterization of Antibiotic Resistance Genes in Full-Scale Reclaimed Water Distribution Systems and Corresponding Potable Systems
Garner, Emily, Chen, Chaoqi, Xia, Kang, Bowers, Jolene, Engelthaler, David M, McLain, Jean, Edwards, Marc A, Pruden, Amy
Published in Environmental science & technology (05.06.2018)
Published in Environmental science & technology (05.06.2018)
Get full text
Journal Article
Novel Odoribacter splanchnicus Strain and Its Outer Membrane Vesicles Exert Immunoregulatory Effects in vitro
Hiippala, Kaisa, Barreto, Gonçalo, Burrello, Claudia, Diaz-Basabe, Angelica, Suutarinen, Maiju, Kainulainen, Veera, Bowers, Jolene R., Lemmer, Darrin, Engelthaler, David M., Eklund, Kari K., Facciotti, Federica, Satokari, Reetta
Published in Frontiers in microbiology (12.11.2020)
Published in Frontiers in microbiology (12.11.2020)
Get full text
Journal Article
Microbial Ecology and Water Chemistry Impact Regrowth of Opportunistic Pathogens in Full-Scale Reclaimed Water Distribution Systems
Garner, Emily, McLain, Jean, Bowers, Jolene, Engelthaler, David M, Edwards, Marc A, Pruden, Amy
Published in Environmental science & technology (21.08.2018)
Published in Environmental science & technology (21.08.2018)
Get full text
Journal Article
A unique multidrug-resistant clonal Trichophyton population distinct from Trichophyton mentagrophytes/Trichophyton interdigitale complex causing an ongoing alarming dermatophytosis outbreak in India: Genomic insights and resistance profile
Singh, Ashutosh, Masih, Aradhana, Monroy-Nieto, Juan, Singh, Pradeep Kumar, Bowers, Jolene, Travis, Jason, Khurana, Ananta, Engelthaler, David M., Meis, Jacques F., Chowdhary, Anuradha
Published in Fungal genetics and biology (01.12.2019)
Published in Fungal genetics and biology (01.12.2019)
Get full text
Journal Article
Isolation of Anti-Inflammatory and Epithelium Reinforcing Bacteroides and Parabacteroides Spp. from A Healthy Fecal Donor
Hiippala, Kaisa, Kainulainen, Veera, Suutarinen, Maiju, Heini, Tuomas, Bowers, Jolene R, Jasso-Selles, Daniel, Lemmer, Darrin, Valentine, Michael, Barnes, Riley, Engelthaler, David M, Satokari, Reetta
Published in Nutrients (27.03.2020)
Published in Nutrients (27.03.2020)
Get full text
Journal Article
Worldwide Phylogenetic Distributions and Population Dynamics of the Genus Histoplasma
Teixeira, Marcus de M, Patané, José S L, Taylor, Maria L, Gómez, Beatriz L, Theodoro, Raquel C, de Hoog, Sybren, Engelthaler, David M, Zancopé-Oliveira, Rosely M, Felipe, Maria S S, Barker, Bridget M
Published in PLoS neglected tropical diseases (01.06.2016)
Published in PLoS neglected tropical diseases (01.06.2016)
Get full text
Journal Article
Mapping the Evolution of Hypervirulent Klebsiella pneumoniae
Struve, Carsten, Roe, Chandler C, Stegger, Marc, Stahlhut, Steen G, Hansen, Dennis S, Engelthaler, David M, Andersen, Paal S, Driebe, Elizabeth M, Keim, Paul, Krogfelt, Karen A
Published in mBio (21.07.2015)
Published in mBio (21.07.2015)
Get full text
Journal Article
Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing
Colman, Rebecca E, Schupp, James M, Hicks, Nathan D, Smith, David E, Buchhagen, Jordan L, Valafar, Faramarz, Crudu, Valeriu, Romancenco, Elena, Noroc, Ecaterina, Jackson, Lynn, Catanzaro, Donald G, Rodwell, Timothy C, Catanzaro, Antonino, Keim, Paul, Engelthaler, David M
Published in PloS one (13.05.2015)
Published in PloS one (13.05.2015)
Get full text
Journal Article
Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis
Yang, Chongguang, Sobkowiak, Benjamin, Naidu, Vijay, Codreanu, Alexandru, Ciobanu, Nelly, Gunasekera, Kenneth S, Chitwood, Melanie H, Alexandru, Sofia, Bivol, Stela, Russi, Marcus, Havumaki, Joshua, Cudahy, Patrick, Fosburgh, Heather, Allender, Christopher J, Centner, Heather, Engelthaler, David M, Menzies, Nicolas A, Warren, Joshua L, Crudu, Valeriu, Colijn, Caroline, Cohen, Ted
Published in PLoS medicine (22.02.2022)
Published in PLoS medicine (22.02.2022)
Get full text
Journal Article
Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition
Highlander, Sarah K, Wood, Jason M, Gillece, John D, Folkerts, Megan, Fofanov, Viacheslav, Furstenau, Tara, Singh, Nitin K, Guan, Lisa, Seuylemezian, Arman, Benardini, James N, Engelthaler, David M, Venkateswaran, Kasthuri, Keim, Paul S
Published in PloS one (22.03.2023)
Published in PloS one (22.03.2023)
Get full text
Journal Article
Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter
Sahl, Jason W, Gillece, John D, Schupp, James M, Waddell, Victor G, Driebe, Elizabeth M, Engelthaler, David M, Keim, Paul
Published in PloS one (24.01.2013)
Published in PloS one (24.01.2013)
Get full text
Journal Article
Lyssa excreta: Defining parameters for fecal samples as a rabies virus surveillance method
Walker, Faith M, Upton, Jordyn R, Erickson, Daryn, Barrand, Zachary A, Brock, Breezy, Valentine, Michael, Federman, Emma L, Froehlich, Emma M, Van Pelt, Lolita, Hastings, Lias, Sanchez, Daniel E, Bergman, David L, Engelthaler, David M, Hepp, Crystal M
Published in PloS one (23.01.2024)
Published in PloS one (23.01.2024)
Get full text
Journal Article
Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States
Zhang, Shaokang, Li, Shaoting, Gu, Weidong, den Bakker, Henk, Boxrud, Dave, Taylor, Angie, Roe, Chandler, Driebe, Elizabeth, Engelthaler, David M, Allard, Marc, Brown, Eric, McDermott, Patrick, Zhao, Shaohua, Bruce, Beau B, Trees, Eija, Fields, Patricia I, Deng, Xiangyu
Published in Emerging infectious diseases (01.01.2019)
Published in Emerging infectious diseases (01.01.2019)
Get full text
Journal Article
A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis
Miotto, Paolo, Tessema, Belay, Tagliani, Elisa, Chindelevitch, Leonid, Starks, Angela M, Emerson, Claudia, Hanna, Debra, Kim, Peter S, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Denkinger, Claudia M, Fleming, Joy, Warren, Robin M, Crook, Derrick, Posey, James, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M, Murray, Megan, Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, Ranganathan, Uma Devi K, McNerney, Ruth, Ezewudo, Matthew, Cirillo, Daniela M, Schito, Marco, Köser, Claudio U, Rodwell, Timothy C
Published in The European respiratory journal (01.12.2017)
Published in The European respiratory journal (01.12.2017)
Get full text
Journal Article
Update on the Epidemiology of coccidioidomycosis in the United States
McCotter, Orion Z, Benedict, Kaitlin, Engelthaler, David M, Komatsu, Ken, Lucas, Kimberley D, Mohle-Boetani, Janet C, Oltean, Hanna, Vugia, Duc, Chiller, Tom M, Sondermeyer Cooksey, Gail L, Nguyen, Alyssa, Roe, Chandler C, Wheeler, Charlotte, Sunenshine, Rebecca
Published in Medical mycology (Oxford) (01.02.2019)
Published in Medical mycology (Oxford) (01.02.2019)
Get more information
Journal Article
Mixed Mycobacterium tuberculosis-Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis, Independent of Pretreatment Heteroresistance
Shin, Sanghyuk S, Modongo, Chawangwa, Baik, Yeonsoo, Allender, Christopher, Lemmer, Darrin, Colman, Rebecca E, Engelthaler, David M, Warren, Robin M, Zetola, Nicola M
Published in The Journal of infectious diseases (05.11.2018)
Published in The Journal of infectious diseases (05.11.2018)
Get full text
Journal Article