by Wu, Martin, Eisen, Jonathan A
Published in Genome biology (13.10.2008)

by Chandler, James Angus, Lang, Jenna Morgan, Bhatnagar, Srijak, Eisen, Jonathan A, Kopp, Artyom
Published in PLoS genetics (01.09.2011)

by Edwards, Joseph, Johnson, Cameron, Santos-Medellín, Christian, Lurie, Eugene, Podishetty, Natraj Kumar, Bhatnagar, Srijak, Eisen, Jonathan A., Sundaresan, Venkatesan
Published in Proceedings of the National Academy of Sciences - PNAS (24.02.2015)

by Van Deynze, Allen, Zamora, Pablo, Delaux, Pierre-Marc, Heitmann, Cristobal, Jayaraman, Dhileepkumar, Rajasekar, Shanmugam, Graham, Danielle, Maeda, Junko, Gibson, Donald, Schwartz, Kevin D, Berry, Alison M, Bhatnagar, Srijak, Jospin, Guillaume, Darling, Aaron, Jeannotte, Richard, Lopez, Javier, Weimer, Bart C, Eisen, Jonathan A, Shapiro, Howard-Yana, Ané, Jean-Michel, Bennett, Alan B
Published in PLoS biology (07.08.2018)

by Busby, Posy E, Soman, Chinmay, Wagner, Maggie R, Friesen, Maren L, Kremer, James, Bennett, Alison, Morsy, Mustafa, Eisen, Jonathan A, Leach, Jan E, Dangl, Jeffery L
Published in PLoS biology (28.03.2017)

by Wu, Dongying, Jospin, Guillaume, Eisen, Jonathan A
Published in PloS one (17.10.2013)

by Kembel, Steven W, Wu, Martin, Eisen, Jonathan A, Green, Jessica L
Published in PLoS computational biology (01.10.2012)

by Tritt, Andrew, Eisen, Jonathan A, Facciotti, Marc T, Darling, Aaron E
Published in PloS one (13.09.2012)

by Rosado, Phillipe M., Leite, Deborah C. A., Duarte, Gustavo A. S., Chaloub, Ricardo M., Jospin, Guillaume, Nunes da Rocha, Ulisses, P. Saraiva, João, Dini-Andreote, Francisco, Eisen, Jonathan A., Bourne, David G., Peixoto, Raquel S.
Published in The ISME Journal (01.04.2019)

by Ettinger, Cassandra L, Eisen, Jonathan A
Published in PloS one (22.07.2020)

by Dietz, Leslie, Horve, Patrick F, Coil, David A, Fretz, Mark, Eisen, Jonathan A, Van Den Wymelenberg, Kevin
Published in mSystems (07.04.2020)

by Martiny, Jennifer B. H., Eisen, Jonathan A., Penn, Kevin, Allison, Steven D., Horner-Devine, M. Claire, DeLong, Edward F.
Published in Proceedings of the National Academy of Sciences - PNAS (10.05.2011)

by Lang, Jenna Morgan, Darling, Aaron E, Eisen, Jonathan A
Published in PloS one (25.04.2013)

by Valdés, Jorge, Pedroso, Inti, Quatrini, Raquel, Dodson, Robert J, Tettelin, Herve, Blake, 2nd, Robert, Eisen, Jonathan A, Holmes, David S
Published in BMC genomics (11.12.2008)

by Rinke, Christian, Schwientek, Patrick, Sczyrba, Alexander, Ivanova, Natalia N., Anderson, Iain J., Cheng, Jan-Fang, Darling, Aaron, Malfatti, Stephanie, Swan, Brandon K., Gies, Esther A., Dodsworth, Jeremy A., Hedlund, Brian P., Tsiamis, George, Sievert, Stefan M., Liu, Wen-Tso, Eisen, Jonathan A., Hallam, Steven J., Kyrpides, Nikos C., Stepanauskas, Ramunas, Rubin, Edward M., Hugenholtz, Philip, Woyke, Tanja
Published in Nature (London) (25.07.2013)

by ANGUS CHANDLER, James, EISEN, Jonathan A, KOPP, Artyom
Published in Applied and Environmental Microbiology (01.10.2012)

by Wu, Martin, Chatterji, Sourav, Eisen, Jonathan A
Published in PloS one (17.01.2012)

by Fahimipour, Ashkaan K, Kardish, Melissa R, Lang, Jenna M, Green, Jessica L, Eisen, Jonathan A, Stachowicz, John J
Published in Applied and environmental microbiology (15.06.2017)

by Wilkins, Laetitia G E, Leray, Matthieu, O'Dea, Aaron, Yuen, Benedict, Peixoto, Raquel S, Pereira, Tiago J, Bik, Holly M, Coil, David A, Duffy, J Emmett, Herre, Edward Allen, Lessios, Harilaos A, Lucey, Noelle M, Mejia, Luis C, Rasher, Douglas B, Sharp, Koty H, Sogin, Emilia M, Thacker, Robert W, Vega Thurber, Rebecca, Wcislo, William T, Wilbanks, Elizabeth G, Eisen, Jonathan A
Published in PLoS biology (11.11.2019)

by Castelle, Cindy J., Hug, Laura A., Wrighton, Kelly C., Thomas, Brian C., Williams, Kenneth H., Wu, Dongying, Tringe, Susannah G., Singer, Steven W., Eisen, Jonathan A., Banfield, Jillian F.
Published in Nature communications (27.08.2013)