Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
Searle, Brian C., Pino, Lindsay K., Egertson, Jarrett D., Ting, Ying S., Lawrence, Robert T., MacLean, Brendan X., Villén, Judit, MacCoss, Michael J.
Published in Nature communications (03.12.2018)
Published in Nature communications (03.12.2018)
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PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data
Ting, Ying S, Egertson, Jarrett D, Bollinger, James G, Searle, Brian C, Payne, Samuel H, Noble, William Stafford, MacCoss, Michael J
Published in Nature methods (01.09.2017)
Published in Nature methods (01.09.2017)
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Multiplex Targeted Sequencing Identifies Recurrently Mutated Genes in Autism Spectrum Disorders
O'Roak, Brian J., Vives, Laura, Fu, Wenqing, Egertson, Jarrett D., Stanaway, Ian B., Phelps, Ian G., Carvill, Gemma, Kumar, Akash, Lee, Choli, Ankenman, Katy, Munson, Jeff, Hiatt, Joseph B., Turner, Emily H., Levy, Roie, O'Day, Diana R., Krumm, Niklas, Coe, Bradley P., Martin, Beth K., Borenstein, Elhanan, Nickerson, Deborah A., Mefford, Heather C., Doherty, Dan, Akey, Joshua M., Bernier, Raphael, Eichler, Evan E., Shendure, Jay
Published in Science (American Association for the Advancement of Science) (21.12.2012)
Published in Science (American Association for the Advancement of Science) (21.12.2012)
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Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
Peckner, Ryan, Myers, Samuel A, Jacome, Alvaro Sebastian Vaca, Egertson, Jarrett D, Abelin, Jennifer G, MacCoss, Michael J, Carr, Steven A, Jaffe, Jacob D
Published in Nature methods (01.05.2018)
Published in Nature methods (01.05.2018)
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Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays
Galitzine, Cyril, Egertson, Jarrett D., Abbatiello, Susan, Henderson, Clark M., Pino, Lindsay K., MacCoss, Michael, Hoofnagle, Andrew N., Vitek, Olga
Published in Molecular & cellular proteomics (01.05.2018)
Published in Molecular & cellular proteomics (01.05.2018)
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Elamipretide effects on the skeletal muscle phosphoproteome in aged female mice
Campbell, Matthew D., Martín-Pérez, Miguel, Egertson, Jarrett D., Gaffrey, Matthew J., Wang, Lu, Bammler, Theo, Rabinovitch, Peter S., MacCoss, Michael, Qian, Wei-Jun, Villen, Judit, Marcinek, David
Published in GeroScience (01.12.2022)
Published in GeroScience (01.12.2022)
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Journal Article
Multiplexed peptide analysis using data-independent acquisition and Skyline
Egertson, Jarrett D, MacLean, Brendan, Johnson, Richard, Xuan, Yue, MacCoss, Michael J
Published in Nature protocols (01.06.2015)
Published in Nature protocols (01.06.2015)
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Multiplexed MS/MS for improved data-independent acquisition
Egertson, Jarrett D, Kuehn, Andreas, Merrihew, Gennifer E, Bateman, Nicholas W, MacLean, Brendan X, Ting, Ying S, Canterbury, Jesse D, Marsh, Donald M, Kellmann, Markus, Zabrouskov, Vlad, Wu, Christine C, MacCoss, Michael J
Published in Nature methods (01.08.2013)
Published in Nature methods (01.08.2013)
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Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions
MacLean, Brendan X., Pratt, Brian S., Egertson, Jarrett D., MacCoss, Michael J., Smith, Richard D., Baker, Erin S.
Published in Journal of the American Society for Mass Spectrometry (01.11.2018)
Published in Journal of the American Society for Mass Spectrometry (01.11.2018)
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Journal Article
Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data
Ting, Ying S., Egertson, Jarrett D., Payne, Samuel H., Kim, Sangtae, MacLean, Brendan, Käll, Lukas, Aebersold, Ruedi, Smith, Richard D., Noble, William Stafford, MacCoss, Michael J.
Published in Molecular & cellular proteomics (01.09.2015)
Published in Molecular & cellular proteomics (01.09.2015)
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Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice
Campbell, Matthew D., Duan, Jicheng, Samuelson, Ashton T., Gaffrey, Matthew J., Merrihew, Gennifer E., Egertson, Jarrett D., Wang, Lu, Bammler, Theo K., Moore, Ronald J., White, Collin C., Kavanagh, Terrance J., Voss, Joachim G., Szeto, Hazel H., Rabinovitch, Peter S., MacCoss, Michael J., Qian, Wei-Jun, Marcinek, David J.
Published in Free radical biology & medicine (01.04.2019)
Published in Free radical biology & medicine (01.04.2019)
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Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments
Searle, Brian C., Egertson, Jarrett D., Bollinger, James G., Stergachis, Andrew B., MacCoss, Michael J.
Published in Molecular & cellular proteomics (01.09.2015)
Published in Molecular & cellular proteomics (01.09.2015)
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Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular Diagnostics
Kim, Yeoun Jin, Sweet, Steve M. M, Egertson, Jarrett D, Sedgewick, Andrew J, Woo, Sunghee, Liao, Wei-li, Merrihew, Gennifer E, Searle, Brian C, Vaske, Charlie, Heaton, Robert, MacCoss, Michael J, Hembrough, Todd
Published in Journal of proteome research (04.01.2019)
Published in Journal of proteome research (04.01.2019)
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Comparison between procedures using SDS for shotgun proteomic analyses of complex samples
Bereman, Michael S., Egertson, Jarrett D., MacCoss, Michael J.
Published in Proteomics (Weinheim) (01.07.2011)
Published in Proteomics (Weinheim) (01.07.2011)
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Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards
Bollinger, James G, Stergachis, Andrew B, Johnson, Richard S, Egertson, Jarrett D, MacCoss, Michael J
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2016)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2016)
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A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations
Litichevskiy, Lev, Peckner, Ryan, Abelin, Jennifer G., Asiedu, Jacob K., Creech, Amanda L., Davis, John F., Davison, Desiree, Dunning, Caitlin M., Egertson, Jarrett D., Egri, Shawn, Gould, Joshua, Ko, Tak, Johnson, Sarah A., Lahr, David L., Lam, Daniel, Liu, Zihan, Lyons, Nicholas J., Lu, Xiaodong, MacLean, Brendan X., Mungenast, Alison E., Officer, Adam, Natoli, Ted E., Papanastasiou, Malvina, Patel, Jinal, Sharma, Vagisha, Toder, Courtney, Tubelli, Andrew A., Young, Jennie Z., Carr, Steven A., Golub, Todd R., Subramanian, Aravind, MacCoss, Michael J., Tsai, Li-Huei, Jaffe, Jacob D.
Published in Cell systems (25.04.2018)
Published in Cell systems (25.04.2018)
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Evaluation of Front-End Higher Energy Collision-Induced Dissociation on a Benchtop Dual-Pressure Linear Ion Trap Mass Spectrometer for Shotgun Proteomics
Bereman, Michael S., Canterbury, Jesse D., Egertson, Jarrett D., Horner, Julie, Remes, Philip M., Schwartz, Jae, Zabrouskov, Vlad, MacCoss, Michael J.
Published in Analytical chemistry (Washington) (07.02.2012)
Published in Analytical chemistry (Washington) (07.02.2012)
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De Novo Correction of Mass Measurement Error in Low Resolution Tandem MS Spectra for Shotgun Proteomics
Egertson, Jarrett D., Eng, Jimmy K., Bereman, Michael S., Hsieh, Edward J., Merrihew, Gennifer E., MacCoss, Michael J.
Published in Journal of the American Society for Mass Spectrometry (01.12.2012)
Published in Journal of the American Society for Mass Spectrometry (01.12.2012)
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단백질 및 프로테옴의 고도로 다중화 가능한 분석
LOBANOV VADIM, MALLICK PARAG, SHERMAN JAMES, ANDERSON ELLIS, EGERTSON JARRETT D
Year of Publication 28.05.2024
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Year of Publication 28.05.2024
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