Dynamic DNA methylation: In the right place at the right time
Luo, Chongyuan, Hajkova, Petra, Ecker, Joseph R
Published in Science (American Association for the Advancement of Science) (28.09.2018)
Published in Science (American Association for the Advancement of Science) (28.09.2018)
Get full text
Journal Article
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
O’Malley, Ronan C., Huang, Shao-shan Carol, Song, Liang, Lewsey, Mathew G., Bartlett, Anna, Nery, Joseph R., Galli, Mary, Gallavotti, Andrea, Ecker, Joseph R.
Published in Cell (19.05.2016)
Published in Cell (19.05.2016)
Get full text
Journal Article
Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain
Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy
Published in Neuron (Cambridge, Mass.) (17.06.2015)
Published in Neuron (Cambridge, Mass.) (17.06.2015)
Get full text
Journal Article
Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana
Sasaki, Eriko, Kawakatsu, Taiji, Ecker, Joseph R, Nordborg, Magnus
Published in PLoS genetics (01.12.2019)
Published in PLoS genetics (01.12.2019)
Get full text
Journal Article
Dynamic DNA methylation reconfiguration during seed development and germination
Kawakatsu, Taiji, Nery, Joseph R, Castanon, Rosa, Ecker, Joseph R
Published in Genome Biology (15.09.2017)
Published in Genome Biology (15.09.2017)
Get full text
Journal Article
Integration of omic networks in a developmental atlas of maize
Walley, Justin W., Sartor, Ryan C., Shen, Zhouxin, Schmitz, Robert J., Wu, Kevin J., Urich, Mark A., Nery, Joseph R., Smith, Laurie G., Schnable, James C., Ecker, Joseph R., Briggs, Steven P.
Published in Science (American Association for the Advancement of Science) (19.08.2016)
Published in Science (American Association for the Advancement of Science) (19.08.2016)
Get full text
Journal Article
Chimeric Activators and Repressors Define HY5 Activity and Reveal a Light-Regulated Feedback Mechanism
Burko, Yogev, Seluzicki, Adam, Zander, Mark, Pedmale, Ullas V, Ecker, Joseph R, Chory, Joanne
Published in The Plant cell (01.04.2020)
Published in The Plant cell (01.04.2020)
Get full text
Journal Article
Mapping genome-wide transcription-factor binding sites using DAP-seq
Bartlett, Anna, O'Malley, Ronan C, Huang, Shao-shan Carol, Galli, Mary, Nery, Joseph R, Gallavotti, Andrea, Ecker, Joseph R
Published in Nature protocols (01.08.2017)
Published in Nature protocols (01.08.2017)
Get full text
Journal Article
Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels
Salehin, Mohammad, Li, Baohua, Tang, Michelle, Katz, Ella, Song, Liang, Ecker, Joseph R., Kliebenstein, Daniel J., Estelle, Mark
Published in Nature communications (06.09.2019)
Published in Nature communications (06.09.2019)
Get full text
Journal Article
Molecular Criteria for Defining the Naive Human Pluripotent State
Theunissen, Thorold W., Friedli, Marc, He, Yupeng, Planet, Evarist, O’Neil, Ryan C., Markoulaki, Styliani, Pontis, Julien, Wang, Haoyi, Iouranova, Alexandra, Imbeault, Michaël, Duc, Julien, Cohen, Malkiel A., Wert, Katherine J., Castanon, Rosa, Zhang, Zhuzhu, Huang, Yanmei, Nery, Joseph R., Drotar, Jesse, Lungjangwa, Tenzin, Trono, Didier, Ecker, Joseph R., Jaenisch, Rudolf
Published in Cell stem cell (06.10.2016)
Published in Cell stem cell (06.10.2016)
Get full text
Journal Article
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
Fang, Rongxin, Preissl, Sebastian, Li, Yang, Hou, Xiaomeng, Lucero, Jacinta, Wang, Xinxin, Motamedi, Amir, Shiau, Andrew K., Zhou, Xinzhu, Xie, Fangming, Mukamel, Eran A., Zhang, Kai, Zhang, Yanxiao, Behrens, M. Margarita, Ecker, Joseph R., Ren, Bing
Published in Nature communications (26.02.2021)
Published in Nature communications (26.02.2021)
Get full text
Journal Article
The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas
Ecker, Joseph R., Geschwind, Daniel H., Kriegstein, Arnold R., Ngai, John, Osten, Pavel, Polioudakis, Damon, Regev, Aviv, Sestan, Nenad, Wickersham, Ian R., Zeng, Hongkui
Published in Neuron (Cambridge, Mass.) (01.11.2017)
Published in Neuron (Cambridge, Mass.) (01.11.2017)
Get full text
Journal Article
Environmental Surface Stability of the MAPbBr3 Single Crystal
Wang, Congcong, Ecker, Benjamin R, Wei, Haotong, Huang, Jinsong, Gao, Yongli
Published in Journal of physical chemistry. C (15.02.2018)
Published in Journal of physical chemistry. C (15.02.2018)
Get full text
Journal Article
High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell
Michael, Todd P., Jupe, Florian, Bemm, Felix, Motley, S. Timothy, Sandoval, Justin P., Lanz, Christa, Loudet, Olivier, Weigel, Detlef, Ecker, Joseph R.
Published in Nature communications (07.02.2018)
Published in Nature communications (07.02.2018)
Get full text
Journal Article
A transcription factor hierarchy defines an environmental stress response network
Song, Liang, Huang, Shao-shan Carol, Wise, Aaron, Castanon, Rosa, Nery, Joseph R., Chen, Huaming, Watanabe, Marina, Thomas, Jerushah, Bar-Joseph, Ziv, Ecker, Joseph R.
Published in Science (American Association for the Advancement of Science) (04.11.2016)
Published in Science (American Association for the Advancement of Science) (04.11.2016)
Get full text
Journal Article
Chromatin architecture reorganization during stem cell differentiation
Dixon, Jesse R., Jung, Inkyung, Selvaraj, Siddarth, Shen, Yin, Antosiewicz-Bourget, Jessica E., Lee, Ah Young, Ye, Zhen, Kim, Audrey, Rajagopal, Nisha, Xie, Wei, Diao, Yarui, Liang, Jing, Zhao, Huimin, Lobanenkov, Victor V., Ecker, Joseph R., Thomson, James A., Ren, Bing
Published in Nature (London) (19.02.2015)
Published in Nature (London) (19.02.2015)
Get full text
Journal Article
MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing
Urich, Mark A, Nery, Joseph R, Lister, Ryan, Schmitz, Robert J, Ecker, Joseph R
Published in Nature protocols (01.03.2015)
Published in Nature protocols (01.03.2015)
Get full text
Journal Article