Efficient evolution of human antibodies from general protein language models
Hie, Brian L, Shanker, Varun R, Xu, Duo, Bruun, Theodora U J, Weidenbacher, Payton A, Tang, Shaogeng, Wu, Wesley, Pak, John E, Kim, Peter S
Published in Nature biotechnology (01.02.2024)
Published in Nature biotechnology (01.02.2024)
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AIRRscape: An interactive tool for exploring B-cell receptor repertoires and antibody responses
Waltari, Eric, Nafees, Saba, McCutcheon, Krista M, Wong, Joan, Pak, John E
Published in PLoS computational biology (20.09.2022)
Published in PLoS computational biology (20.09.2022)
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Structures suggest a mechanism for energy coupling by a family of organic anion transporters
Leano, Jonathan B, Batarni, Samir, Eriksen, Jacob, Juge, Narinobu, Pak, John E, Kimura-Someya, Tomomi, Robles-Colmenares, Yaneth, Moriyama, Yoshinori, Stroud, Robert M, Edwards, Robert H
Published in PLoS biology (13.05.2019)
Published in PLoS biology (13.05.2019)
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Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1
Li, Zhijie, Han, Kristina, Pak, John E, Satkunarajah, Malathy, Zhou, Dongxia, Rini, James M
Published in Nature chemical biology (01.07.2017)
Published in Nature chemical biology (01.07.2017)
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Journal Article
A Single Immunization with Spike-Functionalized Ferritin Vaccines Elicits Neutralizing Antibody Responses against SARS-CoV‑2 in Mice
Powell, Abigail E, Zhang, Kaiming, Sanyal, Mrinmoy, Tang, Shaogeng, Weidenbacher, Payton A, Li, Shanshan, Pham, Tho D, Pak, John E, Chiu, Wah, Kim, Peter S
Published in ACS central science (27.01.2021)
Published in ACS central science (27.01.2021)
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Journal Article
Open-source milligram-scale, four channel, automated protein purification system
Puccinelli, Robert R, Sama, Samia S, Worthington, Caroline M, Puschnik, Andreas S, Pak, John E, Gómez-Sjöberg, Rafael
Published in PloS one (23.02.2024)
Published in PloS one (23.02.2024)
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Journal Article
Hohlraum Reheating from Burning NIF Implosions
Rubery, M S, Rosen, M D, Aybar, N, Landen, O L, Divol, L, Young, C V, Weber, C, Hammer, J, Moody, J D, Moore, A S, Kritcher, A L, Zylstra, A B, Hurricane, O, Pak, A E, MacLaren, S, Zimmerman, G, Harte, J, Woods, T
Published in Physical review letters (09.02.2024)
Published in Physical review letters (09.02.2024)
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Broadly neutralizing human antibodies against dengue virus identified by single B cell transcriptomics
Durham, Natasha D, Agrawal, Aditi, Waltari, Eric, Croote, Derek, Zanini, Fabio, Fouch, Mallorie, Davidson, Edgar, Smith, Olivia, Carabajal, Esteban, Pak, John E, Doranz, Benjamin J, Robinson, Makeda, Sanz, Ana M, Albornoz, Ludwig L, Rosso, Fernando, Einav, Shirit, Quake, Stephen R, McCutcheon, Krista M, Goo, Leslie
Published in eLife (10.12.2019)
Published in eLife (10.12.2019)
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Development of Improved Radiation Drive Environment for High Foot Implosions at the National Ignition Facility
Hinkel, D E, Berzak Hopkins, L F, Ma, T, Ralph, J E, Albert, F, Benedetti, L R, Celliers, P M, Döppner, T, Goyon, C S, Izumi, N, Jarrott, L C, Khan, S F, Kline, J L, Kritcher, A L, Kyrala, G A, Nagel, S R, Pak, A E, Patel, P, Rosen, M D, Rygg, J R, Schneider, M B, Turnbull, D P, Yeamans, C B, Callahan, D A, Hurricane, O A
Published in Physical review letters (25.11.2016)
Published in Physical review letters (25.11.2016)
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Surgical treatment of retroperitoneal neuroblastoma in children. Clinical experience
Kuznetsov, S. A., Kolesnikov, E. N., Shevchenko, A. N., Kozel, Yu. Yu, Mkrtchyan, G. A., Starzhetskaya, M. V., Bespalova, A. I., Pak, E. E., Yurchenko, D. Yu, Popovyan, O. P.
Published in Южно-Российский онкологический журнал (01.03.2022)
Published in Южно-Российский онкологический журнал (01.03.2022)
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Journal Article
Recurrent de novo point mutations in lamin A cause Hutchinson-Gilford progeria syndrome
Collins, Francis S, Eriksson, Maria, Brown, W. Ted, Gordon, Leslie B, Glynn, Michael W, Singer, Joel, Scott, Laura, Erdos, Michael R, Robbins, Christiane M, Moses, Tracy Y, Berglund, Peter, Dutra, Amalia, Pak, Evgenia, Durkin, Sandra, Csoka, Antonei B, Boehnke, Michael, Glover, Thomas W
Published in Nature (London) (15.05.2003)
Published in Nature (London) (15.05.2003)
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Myelodysplasia in autosomal dominant and sporadic monocytopenia immunodeficiency syndrome: diagnostic features and clinical implications
CALVO, Katherine R, VINH, Donald C, MYUNG, Kyungjae, HSU, Amy P, HICKSTEIN, Dennis D, PITTALUGA, Stefania, HOLLAND, Steven M, MARIC, Irina, WEIXIN WANG, NOEL, Pierre, STETLER-STEVENSON, Maryalice, ARTHUR, Diane C, RAFFELD, Mark, DUTRA, Amalia, PAK, Evgenia
Published in Haematologica (Roma) (01.08.2011)
Published in Haematologica (Roma) (01.08.2011)
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Rapid identification of bloodstream infection pathogens
Panova, N.I., Kit, O.I., Kutsevalova, O.Y., Lysenko, I.B., Dmitrieva, V.V., Rozenko, D.A., Gevorkyan, Y.A., Pak, E.E., Kozyuk, O.V., Kapuza, E.A., Shatokhina, O.N., Nikolaeva, N.V., Kalabanova, E.A., Mitashok, I.S., Vladimirova, L.Y.
Published in Annals of oncology (01.10.2018)
Published in Annals of oncology (01.10.2018)
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SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay
Peluso, Michael J, Takahashi, Saki, Hakim, Jill, Kelly, J Daniel, Torres, Leonel, Iyer, Nikita S, Turcios, Keirstinne, Janson, Owen, Munter, Sadie E, Thanh, Cassandra, Donatelli, Joanna, Nixon, Christopher C, Hoh, Rebecca, Tai, Viva, Fehrman, Emily A, Hernandez, Yanel, Spinelli, Matthew A, Gandhi, Monica, Palafox, Mary-Ann, Vallari, Ana, Rodgers, Mary A, Prostko, John, Hackett, Jr, John, Trinh, Lan, Wrin, Terri, Petropoulos, Christos J, Chiu, Charles Y, Norris, Philip J, DiGermanio, Clara, Stone, Mars, Busch, Michael P, Elledge, Susanna K, Zhou, Xin X, Wells, James A, Shu, Albert, Kurtz, Theodore W, Pak, John E, Wu, Wesley, Burbelo, Peter D, Cohen, Jeffrey I, Rutishauser, Rachel L, Martin, Jeffrey N, Deeks, Steven G, Henrich, Timothy J, Rodriguez-Barraquer, Isabel, Greenhouse, Bryan
Published in Science advances (30.07.2021)
Published in Science advances (30.07.2021)
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Convergent antibody responses to SARS-CoV-2 in convalescent individuals
Robbiani, Davide F, Gaebler, Christian, Muecksch, Frauke, Lorenzi, Julio C C, Wang, Zijun, Cho, Alice, Agudelo, Marianna, Barnes, Christopher O, Gazumyan, Anna, Finkin, Shlomo, Hägglöf, Thomas, Oliveira, Thiago Y, Viant, Charlotte, Hurley, Arlene, Hoffmann, Hans-Heinrich, Millard, Katrina G, Kost, Rhonda G, Cipolla, Melissa, Gordon, Kristie, Bianchini, Filippo, Chen, Spencer T, Ramos, Victor, Patel, Roshni, Dizon, Juan, Shimeliovich, Irina, Mendoza, Pilar, Hartweger, Harald, Nogueira, Lilian, Pack, Maggi, Horowitz, Jill, Schmidt, Fabian, Weisblum, Yiska, Michailidis, Eleftherios, Ashbrook, Alison W, Waltari, Eric, Pak, John E, Huey-Tubman, Kathryn E, Koranda, Nicholas, Hoffman, Pauline R, West, Jr, Anthony P, Rice, Charles M, Hatziioannou, Theodora, Bjorkman, Pamela J, Bieniasz, Paul D, Caskey, Marina, Nussenzweig, Michel C
Published in Nature (London) (20.08.2020)
Published in Nature (London) (20.08.2020)
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Rapid SARS-CoV‑2 Spike Protein Detection by Carbon Nanotube-Based Near-Infrared Nanosensors
Pinals, Rebecca L, Ledesma, Francis, Yang, Darwin, Navarro, Nicole, Jeong, Sanghwa, Pak, John E, Kuo, Lili, Chuang, Yung-Chun, Cheng, Yu-Wei, Sun, Hung-Yu, Landry, Markita P
Published in Nano letters (10.03.2021)
Published in Nano letters (10.03.2021)
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Nuclear Bud Formation: A Novel Manifestation of Zidovudine Genotoxicity
Dutra, A., Pak, E., Wincovitch, S., John, K., Poirier, M.C., Olivero, O.A.
Published in Cytogenetic and genome research (01.01.2010)
Published in Cytogenetic and genome research (01.01.2010)
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Analysing the advantages of high temporal resolution geostationary MSG SEVIRI data compared to Polar Operational Environmental Satellite data for land surface monitoring in Africa
Fensholt, R., Anyamba, A., Huber, S., Proud, S.R., Tucker, C.J., Small, J., Pak, E., Rasmussen, M.O., Sandholt, I., Shisanya, C.
Published in International journal of applied earth observation and geoinformation (01.10.2011)
Published in International journal of applied earth observation and geoinformation (01.10.2011)
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