Gallbladder carriage generates genetic variation and genome degradation in Salmonella Typhi
Thanh Duy, Pham, Thieu, Nga Tran Vu, Nguyen Thi Nguyen, To, Ngoc Dan Thanh, Ho, Dongol, Sabina, Karkey, Abhilasha, Carey, Megan, Basnyat, Buddha, Dougan, Gordon, Rabaa, Maia A, Baker, Stephen
Published in PLoS pathogens (21.10.2020)
Published in PLoS pathogens (21.10.2020)
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Journal Article
A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure
Pham Thanh, Duy, Karkey, Abhilasha, Dongol, Sabina, Ho Thi, Nhan, Thompson, Corinne N, Rabaa, Maia A, Arjyal, Amit, Holt, Kathryn E, Wong, Vanessa, Tran Vu Thieu, Nga, Voong Vinh, Phat, Ha Thanh, Tuyen, Pradhan, Ashish, Shrestha, Saroj Kumar, Gajurel, Damoder, Pickard, Derek, Parry, Christopher M, Dougan, Gordon, Wolbers, Marcel, Dolecek, Christiane, Thwaites, Guy E, Basnyat, Buddha, Baker, Stephen
Published in eLife (14.03.2016)
Published in eLife (14.03.2016)
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Journal Article
A retrospective investigation of the population structure and geospatial distribution of Salmonella Paratyphi A in Kathmandu, Nepal
Mylona, Elli, Pham Thanh, Duy, Keane, Jacqueline A, Dongol, Sabina, Basnyat, Buddha, Dolecek, Christiane, Voong Vinh, Phat, Tran Vu Thieu, Nga, Nguyen Thi Nguyen, To, Karkey, Abhilasha, Baker, Stephen
Published in PLoS neglected tropical diseases (18.06.2024)
Published in PLoS neglected tropical diseases (18.06.2024)
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Journal Article
Development and validation of multiplex real-time PCR for simultaneous detection of six bacterial pathogens causing lower respiratory tract infections and antimicrobial resistance genes
Dung, Tran Thi Ngoc, Phat, Voong Vinh, Vinh, Chau, Lan, Nguyen Phu Huong, Phuong, Nguyen Luong Nha, Ngan, Le Thi Quynh, Thwaites, Guy, Thwaites, Louise, Rabaa, Maia, Nguyen, Anh T K, Duy, Pham Thanh
Published in BMC infectious diseases (07.02.2024)
Published in BMC infectious diseases (07.02.2024)
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Journal Article
The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water
Karkey, Abhilasha, Jombart, Thibaut, Walker, Alan W, Thompson, Corinne N, Torres, Andres, Dongol, Sabina, Tran Vu Thieu, Nga, Pham Thanh, Duy, Tran Thi Ngoc, Dung, Voong Vinh, Phat, Singer, Andrew C, Parkhill, Julian, Thwaites, Guy, Basnyat, Buddha, Ferguson, Neil, Baker, Stephen
Published in PLoS neglected tropical diseases (01.01.2016)
Published in PLoS neglected tropical diseases (01.01.2016)
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Journal Article
Efficient attack strategy for legitimate energy-powered eavesdropping in tactical cognitive radio networks
Thanh, Pham Duy, Hoan, Tran Nhut Khai, Vu-Van, Hiep, Koo, Insoo
Published in Wireless networks (01.08.2019)
Published in Wireless networks (01.08.2019)
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Journal Article
Fitness benefits in fluoroquinolone-resistant Salmonella Typhi in the absence of antimicrobial pressure
Baker, Stephen, Duy, Pham Thanh, Nga, Tran Vu Thieu, Dung, Tran Thi Ngoc, Phat, Voong Vinh, Chau, Tran Thuy, Turner, A Keith, Farrar, Jeremy, Boni, Maciej F
Published in eLife (10.12.2013)
Published in eLife (10.12.2013)
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Journal Article
A high‐resolution genomic analysis of multidrug‐resistant hospital outbreaks of Klebsiella pneumoniae
Chung The, Hao, Karkey, Abhilasha, Pham Thanh, Duy, Boinett, Christine J, Cain, Amy K, Ellington, Matthew, Baker, Kate S, Dongol, Sabina, Thompson, Corinne, Harris, Simon R, Jombart, Thibaut, Le Thi Phuong, Tu, Tran Do Hoang, Nhu, Ha Thanh, Tuyen, Shretha, Shrijana, Joshi, Suchita, Basnyat, Buddha, Thwaites, Guy, Thomson, Nicholas R, Rabaa, Maia A, Baker, Stephen
Published in EMBO molecular medicine (01.03.2015)
Published in EMBO molecular medicine (01.03.2015)
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Journal Article
Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri
Connor, Thomas R, Barker, Clare R, Baker, Kate S, Weill, François-Xavier, Talukder, Kaisar Ali, Smith, Anthony M, Baker, Stephen, Gouali, Malika, Pham Thanh, Duy, Jahan Azmi, Ishrat, Dias da Silveira, Wanderley, Semmler, Torsten, Wieler, Lothar H, Jenkins, Claire, Cravioto, Alejandro, Faruque, Shah M, Parkhill, Julian, Wook Kim, Dong, Keddy, Karen H, Thomson, Nicholas R
Published in eLife (04.08.2015)
Published in eLife (04.08.2015)
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Journal Article
Secure Multi-hop Data Transmission in Cognitive Radio Networks Under Attack in the Physical Layer
Thanh, Pham Duy, Vu-Van, Hiep, Koo, Insoo
Published in Wireless personal communications (01.11.2018)
Published in Wireless personal communications (01.11.2018)
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Journal Article
Hybrid NOMA/OMA-Based Dynamic Power Allocation Scheme Using Deep Reinforcement Learning in 5G Networks
Giang, Hoang Thi Huong, Hoan, Tran Nhut Khai, Thanh, Pham Duy, Koo, Insoo
Published in Applied sciences (01.06.2020)
Published in Applied sciences (01.06.2020)
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Journal Article
A POMDP‐based long‐term transmission rate maximization for cognitive radio networks with wireless‐powered ambient backscatter
Giang, Hoang Thi Huong, Hoan, Tran Nhut Khai, Thanh, Pham Duy, Koo, Insoo
Published in International journal of communication systems (01.08.2019)
Published in International journal of communication systems (01.08.2019)
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Journal Article
Emergence of a globally dominant IncHI1 plasmid type associated with multiple drug resistant typhoid
Holt, Kathryn E, Phan, Minh Duy, Baker, Stephen, Duy, Pham Thanh, Nga, Tran Vu Thieu, Nair, Satheesh, Turner, A Keith, Walsh, Ciara, Fanning, Séamus, Farrell-Ward, Sinéad, Dutta, Shanta, Kariuki, Sam, Weill, François-Xavier, Parkhill, Julian, Dougan, Gordon, Wain, John
Published in PLoS neglected tropical diseases (01.07.2011)
Published in PLoS neglected tropical diseases (01.07.2011)
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Journal Article
The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal
Dongol, Sabina, Thompson, Corinne N, Clare, Simon, Nga, Tran Vu Thieu, Duy, Pham Thanh, Karkey, Abhilasha, Arjyal, Amit, Koirala, Samir, Khatri, Nely Shrestha, Maskey, Pukar, Poudel, Sanjay, Jaiswal, Vijay Kumar, Vaidya, Sujan, Dougan, Gordon, Farrar, Jeremy J, Dolecek, Christiane, Basnyat, Buddha, Baker, Stephen
Published in PloS one (15.10.2012)
Published in PloS one (15.10.2012)
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Journal Article
The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia
Pham Thanh, Duy, Thompson, Corinne N, Rabaa, Maia A, Sona, Soeng, Sopheary, Sun, Kumar, Varun, Moore, Catrin, Tran Vu Thieu, Nga, Wijedoru, Lalith, Holt, Kathryn E, Wong, Vanessa, Pickard, Derek, Thwaites, Guy E, Day, Nicholas, Dougan, Gordon, Turner, Paul, Parry, Christopher M, Baker, Stephen
Published in PLoS neglected tropical diseases (22.06.2016)
Published in PLoS neglected tropical diseases (22.06.2016)
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Journal Article
The origins of haplotype 58 (H58) Salmonella enterica serovar Typhi
Carey, Megan E, Thi Nguyen, To Nguyen, Tran, Do Hoang Nhu, Dyson, Zoe A, Keane, Jacqueline A, Pham Thanh, Duy, Mylona, Elli, Nair, Satheesh, Chattaway, Marie, Baker, Stephen
Published in Communications biology (28.06.2024)
Published in Communications biology (28.06.2024)
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