Dimensionality reduction for visualizing single-cell data using UMAP
Becht, Etienne, McInnes, Leland, Healy, John, Dutertre, Charles-Antoine, Kwok, Immanuel W H, Ng, Lai Guan, Ginhoux, Florent, Newell, Evan W
Published in Nature biotechnology (01.01.2019)
Published in Nature biotechnology (01.01.2019)
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Journal Article
Genetic models of human and mouse dendritic cell development and function
Anderson, 3rd, David A, Dutertre, Charles-Antoine, Ginhoux, Florent, Murphy, Kenneth M
Published in Nature reviews. Immunology (01.02.2021)
Published in Nature reviews. Immunology (01.02.2021)
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Journal Article
Plasmacytoid dendritic cells develop from Ly6D + lymphoid progenitors distinct from the myeloid lineage
Dress, Regine J, Dutertre, Charles-Antoine, Giladi, Amir, Schlitzer, Andreas, Low, Ivy, Shadan, Nurhidaya Binte, Tay, Alicia, Lum, Josephine, Kairi, Muhammad Faris Bin Mohd, Hwang, You Yi, Becht, Etienne, Cheng, Yang, Chevrier, Marion, Larbi, Anis, Newell, Evan W, Amit, Ido, Chen, Jinmiao, Ginhoux, Florent
Published in Nature immunology (01.07.2019)
Published in Nature immunology (01.07.2019)
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Journal Article
A single-cell and spatially resolved atlas of human breast cancers
Wu, Sunny Z, Al-Eryani, Ghamdan, Roden, Daniel Lee, Junankar, Simon, Harvey, Kate, Andersson, Alma, Thennavan, Aatish, Wang, Chenfei, Torpy, James R, Bartonicek, Nenad, Wang, Taopeng, Larsson, Ludvig, Kaczorowski, Dominik, Weisenfeld, Neil I, Uytingco, Cedric R, Chew, Jennifer G, Bent, Zachary W, Chan, Chia-Ling, Gnanasambandapillai, Vikkitharan, Dutertre, Charles-Antoine, Gluch, Laurence, Hui, Mun N, Beith, Jane, Parker, Andrew, Robbins, Elizabeth, Segara, Davendra, Cooper, Caroline, Mak, Cindy, Chan, Belinda, Warrier, Sanjay, Ginhoux, Florent, Millar, Ewan, Powell, Joseph E, Williams, Stephen R, Liu, X Shirley, O'Toole, Sandra, Lim, Elgene, Lundeberg, Joakim, Perou, Charles M, Swarbrick, Alexander
Published in Nature genetics (01.09.2021)
Published in Nature genetics (01.09.2021)
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Journal Article
Cross-tissue single-cell landscape of human monocytes and macrophages in health and disease
Mulder, Kevin, Patel, Amit Ashok, Kong, Wan Ting, Piot, Cécile, Halitzki, Evelyn, Dunsmore, Garett, Khalilnezhad, Shabnam, Irac, Sergio Erdal, Dubuisson, Agathe, Chevrier, Marion, Zhang, Xiao Meng, Tam, John Kit Chung, Lim, Tony Kiat Hon, Wong, Regina Men Men, Pai, Rhea, Khalil, Ahmed Ibrahim Samir, Chow, Pierce Kah Hoe, Wu, Suny Z., Al-Eryani, Ghamdan, Roden, Daniel, Swarbrick, Alexander, Chan, Jerry Kok Yen, Albani, Salvatore, Derosa, Lisa, Zitvogel, Laurence, Sharma, Ankur, Chen, Jinmiao, Silvin, Aymeric, Bertoletti, Antonio, Blériot, Camille, Dutertre, Charles-Antoine, Ginhoux, Florent
Published in Immunity (Cambridge, Mass.) (10.08.2021)
Published in Immunity (Cambridge, Mass.) (10.08.2021)
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Journal Article
Single-Cell Analysis of Human Mononuclear Phagocytes Reveals Subset-Defining Markers and Identifies Circulating Inflammatory Dendritic Cells
Dutertre, Charles-Antoine, Becht, Etienne, Irac, Sergio Erdal, Khalilnezhad, Ahad, Narang, Vipin, Khalilnezhad, Shabnam, Ng, Pei Y., van den Hoogen, Lucas L., Leong, Jing Yao, Lee, Bernett, Chevrier, Marion, Zhang, Xiao Meng, Yong, Pearly Jean Ai, Koh, Geraldine, Lum, Josephine, Howland, Shanshan Wu, Mok, Esther, Chen, Jinmiao, Larbi, Anis, Tan, Henry Kun Kiaang, Lim, Tony Kiat Hon, Karagianni, Panagiota, Tzioufas, Athanasios G., Malleret, Benoit, Brody, Joshua, Albani, Salvatore, van Roon, Joel, Radstake, Timothy, Newell, Evan W., Ginhoux, Florent
Published in Immunity (Cambridge, Mass.) (17.09.2019)
Published in Immunity (Cambridge, Mass.) (17.09.2019)
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Journal Article
Cross-Species Single-Cell Analysis Reveals Divergence of the Primate Microglia Program
Geirsdottir, Laufey, David, Eyal, Keren-Shaul, Hadas, Weiner, Assaf, Bohlen, Stefan Cornelius, Neuber, Jana, Balic, Adam, Giladi, Amir, Sheban, Fadi, Dutertre, Charles-Antoine, Pfeifle, Christine, Peri, Francesca, Raffo-Romero, Antonella, Vizioli, Jacopo, Matiasek, Kaspar, Scheiwe, Christian, Meckel, Stephan, Mätz-Rensing, Kerstin, van der Meer, Franziska, Thormodsson, Finnbogi Rutur, Stadelmann, Christine, Zilkha, Noga, Kimchi, Tali, Ginhoux, Florent, Ulitsky, Igor, Erny, Daniel, Amit, Ido, Prinz, Marco
Published in Cell (12.12.2019)
Published in Cell (12.12.2019)
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Journal Article
Highly functional virus-specific cellular immune response in asymptomatic SARS-CoV-2 infection
Le Bert, Nina, Clapham, Hannah E, Tan, Anthony T, Chia, Wan Ni, Tham, Christine Y L, Lim, Jane M, Kunasegaran, Kamini, Tan, Linda Wei Lin, Dutertre, Charles-Antoine, Shankar, Nivedita, Lim, Joey M E, Sun, Louisa Jin, Zahari, Marina, Tun, Zaw Myo, Kumar, Vishakha, Lim, Beng Lee, Lim, Siew Hoon, Chia, Adeline, Tan, Yee-Joo, Tambyah, Paul Anantharajah, Kalimuddin, Shirin, Lye, David, Low, Jenny G H, Wang, Lin-Fa, Wan, Wei Yee, Hsu, Li Yang, Bertoletti, Antonio, Tam, Clarence C
Published in The Journal of experimental medicine (03.05.2021)
Published in The Journal of experimental medicine (03.05.2021)
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Journal Article
Intravenous nanoparticle vaccination generates stem-like TCF1 + neoantigen-specific CD8 + T cells
Baharom, Faezzah, Ramirez-Valdez, Ramiro A, Tobin, Kennedy K S, Yamane, Hidehiro, Dutertre, Charles-Antoine, Khalilnezhad, Ahad, Reynoso, Glennys V, Coble, Vincent L, Lynn, Geoffrey M, Mulè, Matthew P, Martins, Andrew J, Finnigan, John P, Zhang, Xiao Meng, Hamerman, Jessica A, Bhardwaj, Nina, Tsang, John S, Hickman, Heather D, Ginhoux, Florent, Ishizuka, Andrew S, Seder, Robert A
Published in Nature immunology (01.01.2021)
Published in Nature immunology (01.01.2021)
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Journal Article
TIM4 expression by dendritic cells mediates uptake of tumor-associated antigens and anti-tumor responses
Caronni, Nicoletta, Piperno, Giulia Maria, Simoncello, Francesca, Romano, Oriana, Vodret, Simone, Yanagihashi, Yuichi, Dress, Regine, Dutertre, Charles-Antoine, Bugatti, Mattia, Bourdeley, Pierre, Del Prete, Annalisa, Schioppa, Tiziana, Mazza, Emilia Maria Cristina, Collavin, Licio, Zacchigna, Serena, Ostuni, Renato, Guermonprez, Pierre, Vermi, William, Ginhoux, Florent, Bicciato, Silvio, Nagata, Shigekatzu, Benvenuti, Federica
Published in Nature communications (14.04.2021)
Published in Nature communications (14.04.2021)
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Journal Article
Hypoxia‐driven immunosuppression by Treg and type‐2 conventional dendritic cells in HCC
Suthen, Sheena, Lim, Chun Jye, Nguyen, Phuong H. D., Dutertre, Charles‐Antoine, Lai, Hannah L. H., Wasser, Martin, Chua, Camillus, Lim, Tony K. H., Leow, Wei Qiang, Loh, Tracy Jiezhen, Wan, Wei Keat, Pang, Yin Huei, Soon, Gwyneth, Cheow, Peng Chung, Kam, Juinn Huar, Iyer, Shridhar, Kow, Alfred, Tam, Wai Leong, Shuen, Timothy W. H., Toh, Han Chong, Dan, Yock Young, Bonney, Glenn K., Chan, Chung Yip, Chung, Alexander, Goh, Brian K. P., Zhai, Weiwei, Ginhoux, Florent, Chow, Pierce K. H., Albani, Salvatore, Chew, Valerie
Published in Hepatology (Baltimore, Md.) (01.11.2022)
Published in Hepatology (Baltimore, Md.) (01.11.2022)
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Journal Article
HIV-1 reservoirs in urethral macrophages of patients under suppressive antiretroviral therapy
Ganor, Yonatan, Real, Fernando, Sennepin, Alexis, Dutertre, Charles-Antoine, Prevedel, Lisa, Xu, Lin, Tudor, Daniela, Charmeteau, Bénédicte, Couedel-Courteille, Anne, Marion, Sabrina, Zenak, Ali-Redha, Jourdain, Jean-Pierre, Zhou, Zhicheng, Schmitt, Alain, Capron, Claude, Eugenin, Eliseo A, Cheynier, Rémi, Revol, Marc, Cristofari, Sarra, Hosmalin, Anne, Bomsel, Morgane
Published in Nature microbiology (01.04.2019)
Published in Nature microbiology (01.04.2019)
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Journal Article
Combinatorial Single-Cell Analyses of Granulocyte-Monocyte Progenitor Heterogeneity Reveals an Early Uni-potent Neutrophil Progenitor
Kwok, Immanuel, Becht, Etienne, Xia, Yu, Ng, Melissa, Teh, Ye Chean, Tan, Leonard, Evrard, Maximilien, Li, Jackson L.Y., Tran, Hoa T.N., Tan, Yingrou, Liu, Dehua, Mishra, Archita, Liong, Ka Hang, Leong, Keith, Zhang, Yuning, Olsson, Andre, Mantri, Chinmay Kumar, Shyamsunder, Pavithra, Liu, Zhaoyuan, Piot, Cecile, Dutertre, Charles-Antoine, Cheng, Hui, Bari, Sudipto, Ang, Nicholas, Biswas, Subhra K., Koeffler, H. Philip, Tey, Hong Liang, Larbi, Anis, Su, I-Hsin, Lee, Bernett, St. John, Ashley, Chan, Jerry K.Y., Hwang, William Y.K., Chen, Jinmiao, Salomonis, Nathan, Chong, Shu Zhen, Grimes, H. Leighton, Liu, Bing, Hidalgo, Andrés, Newell, Evan W., Cheng, Tao, Ginhoux, Florent, Ng, Lai Guan
Published in Immunity (Cambridge, Mass.) (18.08.2020)
Published in Immunity (Cambridge, Mass.) (18.08.2020)
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Journal Article
Single-cell analysis of human skin identifies CD14+ type 3 dendritic cells co-producing IL1B and IL23A in psoriasis
Nakamizo, Satoshi, Dutertre, Charles-Antoine, Khalilnezhad, Ahad, Zhang, Xiao Meng, Lim, Shawn, Lum, Josephine, Koh, Geraldine, Foong, Charlene, Yong, Pearly Jean Ai, Tan, Kahbing Jasmine, Sato, Reiko, Tomari, Kaori, Yvan-Charvet, Laurent, He, Helen, Guttman-Yassky, Emma, Malleret, Benoit, Shibuya, Rintaro, Iwata, Masashi, Janela, Baptiste, Goto, Tsuyoshi, Lucinda, Tan Siyun, Tang, Mark B Y, Theng, Colin, Julia, Valerie, Hacini-Rachinel, Feriel, Kabashima, Kenji, Ginhoux, Florent
Published in The Journal of experimental medicine (06.09.2021)
Published in The Journal of experimental medicine (06.09.2021)
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Journal Article
Engineered niches support the development of human dendritic cells in humanized mice
Anselmi, Giorgio, Vaivode, Kristine, Dutertre, Charles-Antoine, Bourdely, Pierre, Missolo-Koussou, Yoann, Newell, Evan, Hickman, Oliver, Wood, Kristie, Saxena, Alka, Helft, Julie, Ginhoux, Florent, Guermonprez, Pierre
Published in Nature communications (28.04.2020)
Published in Nature communications (28.04.2020)
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Journal Article
Guidelines for mouse and human DC functional assays
Clausen, Björn E., Amon, Lukas, Backer, Ronald A., Berod, Luciana, Bopp, Tobias, Brand, Anna, Burgdorf, Sven, Chen, Luxia, Da, Meihong, Distler, Ute, Dress, Regine J., Dudziak, Diana, Dutertre, Charles‐Antoine, Eich, Christina, Gabele, Anna, Geiger, Melanie, Ginhoux, Florent, Giusiano, Lucila, Godoy, Gloria J., Hamouda, Ahmed E.I., Hatscher, Lukas, Heger, Lukas, Heidkamp, Gordon F., Hernandez, Lola C., Jacobi, Lukas, Kaszubowski, Tomasz, Kong, Wan Ting, Lehmann, Christian H. K., López‐López, Tamara, Mahnke, Karsten, Nitsche, Dominik, Renkawitz, Jörg, Reza, Rifat A., Sáez, Pablo J., Schlautmann, Laura, Schmitt, Madeleine T., Seichter, Anna, Sielaff, Malte, Sparwasser, Tim, Stoitzner, Patrizia, Tchitashvili, Giorgi, Tenzer, Stefan, Tochoedo, Nounagnon R., Vurnek, Damir, Zink, Fabian, Hieronymus, Thomas
Published in European journal of immunology (01.12.2023)
Published in European journal of immunology (01.12.2023)
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Journal Article
A biology-driven deep generative model for cell-type annotation in cytometry
Blampey, Quentin, Bercovici, Nadège, Dutertre, Charles-Antoine, Pic, Isabelle, Ribeiro, Joana Mourato, André, Fabrice, Cournède, Paul-Henry
Published in Briefings in bioinformatics (20.09.2023)
Published in Briefings in bioinformatics (20.09.2023)
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Journal Article
Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity
Tay, Angeline S.L., Li, Chenhao, Nandi, Tannistha, Chng, Kern Rei, Andiappan, Anand Kumar, Mettu, Vijaya Saradhi, de Cevins, Camille, Ravikrishnan, Aarthi, Dutertre, Charles-Antoine, Wong, X.F. Colin C., Ng, Amanda Hui Qi, Matta, Sri Anusha, Ginhoux, Florent, Rötzschke, Olaf, Chew, Fook Tim, Tang, Mark B.Y., Yew, Yik Weng, Nagarajan, Niranjan, Common, John E.A.
Published in Journal of allergy and clinical immunology (01.04.2021)
Published in Journal of allergy and clinical immunology (01.04.2021)
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Journal Article
Prevalence and functional profile of SARS-CoV-2 T cells in asymptomatic Kenyan adults
Samandari, Taraz, Ongalo, Joshua B, McCarthy, Kimberly D, Biegon, Richard K, Madiega, Philister A, Mithika, Anne, Orinda, Joseph, Mboya, Grace M, Mwaura, Patrick, Anzala, Omu, Onyango, Clayton, Oluoch, Fredrick O, Osoro, Eric, Dutertre, Charles-Antoine, Tan, Nicole, Hang, Shou Kit, Hariharaputran, Smrithi, Lye, David C, Herman-Roloff, Amy, Le Bert, Nina, Bertoletti, Antonio
Published in The Journal of clinical investigation (03.07.2023)
Published in The Journal of clinical investigation (03.07.2023)
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Journal Article
Immunophenotyping monocytes, macrophages and granulocytes in the Pteropodid bat Eonycteris spelaea
Gamage, Akshamal M, Zhu, Feng, Ahn, Matae, Foo, Randy Jee Hiang, Hey, Ying Ying, Low, Dolyce H W, Mendenhall, Ian H, Dutertre, Charles-Antoine, Wang, Lin-Fa
Published in Scientific reports (15.01.2020)
Published in Scientific reports (15.01.2020)
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