Optimal marker gene selection for cell type discrimination in single cell analyses
Dumitrascu, Bianca, Villar, Soledad, Mixon, Dustin G., Engelhardt, Barbara E.
Published in Nature communications (19.02.2021)
Published in Nature communications (19.02.2021)
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Journal Article
Sparse multi-output Gaussian processes for online medical time series prediction
Cheng, Li-Fang, Dumitrascu, Bianca, Darnell, Gregory, Chivers, Corey, Draugelis, Michael, Li, Kai, Engelhardt, Barbara E
Published in BMC medical informatics and decision making (08.07.2020)
Published in BMC medical informatics and decision making (08.07.2020)
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Journal Article
Causal network inference from gene transcriptional time-series response to glucocorticoids
Lu, Jonathan, Dumitrascu, Bianca, McDowell, Ian C, Jo, Brian, Barrera, Alejandro, Hong, Linda K, Leichter, Sarah M, Reddy, Timothy E, Engelhardt, Barbara E
Published in PLoS computational biology (29.01.2021)
Published in PLoS computational biology (29.01.2021)
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Journal Article
MarkerMap: nonlinear marker selection for single-cell studies
Gregory, Wilson, Sarwar, Nabeel, Kevrekidis, George, Villar, Soledad, Dumitrascu, Bianca
Published in NPJ systems biology and applications (14.02.2024)
Published in NPJ systems biology and applications (14.02.2024)
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Journal Article
Bayesian nonparametric discovery of isoforms and individual specific quantification
Aguiar, Derek, Cheng, Li-Fang, Dumitrascu, Bianca, Mordelet, Fantine, Pai, Athma A., Engelhardt, Barbara E.
Published in Nature communications (27.04.2018)
Published in Nature communications (27.04.2018)
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Journal Article
Deep learning for bioimage analysis in developmental biology
Hallou, Adrien, Yevick, Hannah G, Dumitrascu, Bianca, Uhlmann, Virginie
Published in Development (Cambridge) (15.09.2021)
Published in Development (Cambridge) (15.09.2021)
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Journal Article
In silico tissue generation and power analysis for spatial omics
Baker, Ethan A. G., Schapiro, Denis, Dumitrascu, Bianca, Vickovic, Sanja, Regev, Aviv
Published in Nature methods (01.03.2023)
Published in Nature methods (01.03.2023)
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Journal Article
Statistical tests for detecting variance effects in quantitative trait studies
Dumitrascu, Bianca, Darnell, Gregory, Ayroles, Julien, Engelhardt, Barbara E
Published in Bioinformatics (15.01.2019)
Published in Bioinformatics (15.01.2019)
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Journal Article
Gene-level alignment of single-cell trajectories
Sumanaweera, Dinithi, Suo, Chenqu, Cujba, Ana-Maria, Muraro, Daniele, Dann, Emma, Polanski, Krzysztof, Steemers, Alexander S, Lee, Woochan, Oliver, Amanda J, Park, Jong-Eun, Meyer, Kerstin B, Dumitrascu, Bianca, Teichmann, Sarah A
Published in Nature methods (19.09.2024)
Published in Nature methods (19.09.2024)
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Journal Article
Hypergraph factorization for multi-tissue gene expression imputation
Viñas, Ramon, Joshi, Chaitanya K., Georgiev, Dobrik, Lin, Phillip, Dumitrascu, Bianca, Gamazon, Eric R., Liò, Pietro
Published in Nature machine intelligence (01.07.2023)
Published in Nature machine intelligence (01.07.2023)
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Journal Article
SEX DIFFERENCES AT THE MOLECULAR LEVEL: LESSONS FROM THE HUMAN TRANSCRIPTOME
Stranger, Barbara, Oliva, Meritxell, Gamazon, Eric, Reverter, Ferran, Wucher, Valentin, Balliu, Brunilda, Dumitrascu, Bianca, Parsana, Princy, Payne, Anthony, Jo, Brian, Montgomery, Stephen, Battle, Alexis, Ardlie, Kristin, Guigo, Roderic, Engelhardt, Barbara
Published in European neuropsychopharmacology (2019)
Published in European neuropsychopharmacology (2019)
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Journal Article
Sequential Gaussian Processes for Online Learning of Nonstationary Functions
Zhang, Michael Minyi, Dumitrascu, Bianca, Williamson, Sinead A, Engelhardt, Barbara E
Published in arXiv.org (06.05.2023)
Published in arXiv.org (06.05.2023)
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Paper
Journal Article
Deep learning for bioimage analysis
Hallou, Adrien, Yevick, Hannah, Dumitrascu, Bianca, Uhlmann, Virginie
Year of Publication 06.07.2021
Year of Publication 06.07.2021
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Journal Article
MarkerMap: nonlinear marker selection for single-cell studies
Sarwar, Nabeel, Gregory, Wilson, Kevrekidis, George A, Villar, Soledad, Dumitrascu, Bianca
Year of Publication 28.07.2022
Year of Publication 28.07.2022
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Journal Article
Dimensionless machine learning: Imposing exact units equivariance
Villar, Soledad, Yao, Weichi, Hogg, David W, Blum-Smith, Ben, Dumitrascu, Bianca
Year of Publication 02.04.2022
Year of Publication 02.04.2022
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Journal Article