Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
Dufayard, Jean-François, Duret, Laurent, Penel, Simon, Gouy, Manolo, Rechenmann, François, Perrière, Guy
Published in Bioinformatics (01.06.2005)
Published in Bioinformatics (01.06.2005)
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Journal Article
Badnaviruses and banana genomes: a long association sheds light on Musa phylogeny and origin
Chabannes, Matthieu, Gabriel, Marc, Aksa, Abderrahmane, Galzi, Serge, Dufayard, Jean‐François, Iskra‐Caruana, Marie‐Line, Muller, Emmanuelle
Published in Molecular plant pathology (01.02.2021)
Published in Molecular plant pathology (01.02.2021)
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Journal Article
Estimating maximum likelihood phylogenies with PhyML
Guindon, Stéphane, Delsuc, Frédéric, Dufayard, Jean-François, Gascuel, Olivier
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2009)
Published in Methods in molecular biology (Clifton, N.J.) (01.01.2009)
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Journal Article
GreenPhylDB v5: a comparative pangenomic database for plant genomes
Guignon, Valentin, Toure, Abdel, Droc, Gaëtan, Dufayard, Jean-François, Conte, Matthieu, Rouard, Mathieu
Published in Nucleic acids research (08.01.2021)
Published in Nucleic acids research (08.01.2021)
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Journal Article
SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations
Dereeper, Alexis, Homa, Felix, Andres, Gwendoline, Sempere, Guilhem, Sarah, Gautier, Hueber, Yann, Dufayard, Jean-François, Ruiz, Manuel
Published in Nucleic acids research (01.07.2015)
Published in Nucleic acids research (01.07.2015)
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Journal Article
New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms
Dufayard, Jean-François, Bettembourg, Mathilde, Fischer, Iris, Droc, Gaetan, Guiderdoni, Emmanuel, Périn, Christophe, Chantret, Nathalie, Diévart, Anne
Published in Frontiers in plant science (05.04.2017)
Published in Frontiers in plant science (05.04.2017)
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Journal Article
Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Hennet, Lauriane, Berger, Angélique, Trabanco, Noemi, Ricciuti, Emeline, Dufayard, Jean-François, Bocs, Stéphanie, Bastianelli, Denis, Bonnal, Laurent, Roques, Sandrine, Rossini, Laura, Luquet, Delphine, Terrier, Nancy, Pot, David
Published in Frontiers in plant science (03.03.2020)
Published in Frontiers in plant science (03.03.2020)
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Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple
Watson, Amy E, Guitton, Baptiste, Soriano, Alexandre, Rivallan, Ronan, Vignes, Hélène, Farrera, Isabelle, Huettel, Bruno, Arnaiz, Catalina, Falavigna, Vítor da Silveira, Coupel-Ledru, Aude, Segura, Vincent, Sarah, Gautier, Dufayard, Jean-François, Sidibe-Bocs, Stéphanie, Costes, Evelyne, Andrés, Fernando
Published in Frontiers in plant science (21.02.2024)
Published in Frontiers in plant science (21.02.2024)
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Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing
Duan, Cuifang, Argout, Xavier, Gébelin, Virginie, Summo, Marilyne, Dufayard, Jean-François, Leclercq, Julie, Kuswanhadi, Piyatrakul, Piyanuch, Pirrello, Julien, Rio, Maryannick, Champion, Antony, Montoro, Pascal
Published in BMC genomics (16.01.2013)
Published in BMC genomics (16.01.2013)
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Journal Article
In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization
Khater, Fida, Balestrino, Damien, Charbonnel, Nicolas, Dufayard, Jean François, Brisse, Sylvain, Forestier, Christiane
Published in PloS one (09.03.2015)
Published in PloS one (09.03.2015)
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Journal Article
The banana genome hub
Droc, Gaëtan, Larivière, Delphine, Guignon, Valentin, Yahiaoui, Nabila, This, Dominique, Garsmeur, Olivier, Dereeper, Alexis, Hamelin, Chantal, Argout, Xavier, Dufayard, Jean-François, Lengelle, Juliette, Baurens, Franc-Christophe, Cenci, Alberto, Pitollat, Bertrand, D'Hont, Angélique, Ruiz, Manuel, Rouard, Mathieu, Bocs, Stéphanie
Published in Database : the journal of biological databases and curation (2013)
Published in Database : the journal of biological databases and curation (2013)
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Journal Article
Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence-structure-function analysis
Fleury, Cécile, Gracy, Jérôme, Gautier, Marie-Françoise, Pons, Jean-Luc, Dufayard, Jean-François, Labesse, Gilles, Ruiz, Manuel, de Lamotte, Frédéric
Published in PeerJ (San Francisco, CA) (14.08.2019)
Published in PeerJ (San Francisco, CA) (14.08.2019)
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Journal Article
Databases of homologous gene families for comparative genomics
Penel, Simon, Arigon, Anne-Muriel, Dufayard, Jean-François, Sertier, Anne-Sophie, Daubin, Vincent, Duret, Laurent, Gouy, Manolo, Perrière, Guy
Published in BMC bioinformatics (16.06.2009)
Published in BMC bioinformatics (16.06.2009)
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Journal Article
Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis
Piyatrakul, Piyanuch, Putranto, Riza-Arief, Martin, Florence, Rio, Maryannick, Dessailly, Florence, Leclercq, Julie, Dufayard, Jean-François, Lardet, Ludovic, Montoro, Pascal
Published in BMC plant biology (26.12.2012)
Published in BMC plant biology (26.12.2012)
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Journal Article
Impact of recurrent gene duplication on adaptation of plant genomes
Fischer, Iris, Dainat, Jacques, Ranwez, Vincent, Glémin, Sylvain, Dufayard, Jean-François, Chantret, Nathalie
Published in BMC plant biology (31.05.2014)
Published in BMC plant biology (31.05.2014)
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Journal Article
Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis
Leclercq, Julie, Wu, Shuangyang, Farinas, Benoît, Pointet, Stéphanie, Favreau, Bénédicte, Vignes, Hélène, Kuswanhadi, Kuswanhadi, Ortega-Abboud, Enrique, Dufayard, Jean-François, Gao, Shenghan, Droc, Gaëtan, Hu, Songnian, Tang, Chaorong, Montoro, Pascal
Published in PeerJ (San Francisco, CA) (29.04.2020)
Published in PeerJ (San Francisco, CA) (29.04.2020)
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