Deep learning for healthcare: review, opportunities and challenges
Miotto, Riccardo, Wang, Fei, Wang, Shuang, Jiang, Xiaoqian, Dudley, Joel T
Published in Briefings in bioinformatics (27.11.2018)
Published in Briefings in bioinformatics (27.11.2018)
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Journal Article
Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records
Miotto, Riccardo, Li, Li, Kidd, Brian A., Dudley, Joel T.
Published in Scientific reports (17.05.2016)
Published in Scientific reports (17.05.2016)
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Journal Article
Machine-Learning Algorithms to Automate Morphological and Functional Assessments in 2D Echocardiography
Narula, Sukrit, BS, Shameer, Khader, PhD, Salem Omar, Alaa Mabrouk, MD, PhD, Dudley, Joel T., PhD, Sengupta, Partho P., MD, DM
Published in Journal of the American College of Cardiology (29.11.2016)
Published in Journal of the American College of Cardiology (29.11.2016)
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Journal Article
Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus
Readhead, Ben, Haure-Mirande, Jean-Vianney, Funk, Cory C., Richards, Matthew A., Shannon, Paul, Haroutunian, Vahram, Sano, Mary, Liang, Winnie S., Beckmann, Noam D., Price, Nathan D., Reiman, Eric M., Schadt, Eric E., Ehrlich, Michelle E., Gandy, Sam, Dudley, Joel T.
Published in Neuron (Cambridge, Mass.) (11.07.2018)
Published in Neuron (Cambridge, Mass.) (11.07.2018)
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Journal Article
Identification of type 2 diabetes subgroups through topological analysis of patient similarity
Li, Li, Cheng, Wei-Yi, Glicksberg, Benjamin S, Gottesman, Omri, Tamler, Ronald, Chen, Rong, Bottinger, Erwin P, Dudley, Joel T
Published in Science translational medicine (28.10.2015)
Published in Science translational medicine (28.10.2015)
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Journal Article
Necroptosis activation in Alzheimer's disease
Caccamo, Antonella, Branca, Caterina, Piras, Ignazio S, Ferreira, Eric, Huentelman, Matthew J, Liang, Winnie S, Readhead, Ben, Dudley, Joel T, Spangenberg, Elizabeth E, Green, Kim N, Belfiore, Ramona, Winslow, Wendy, Oddo, Salvatore
Published in Nature neuroscience (01.09.2017)
Published in Nature neuroscience (01.09.2017)
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Journal Article
Viral Dynamics of SARS-CoV-2 Variants in Vaccinated and Unvaccinated Persons
Kissler, Stephen M, Fauver, Joseph R, Mack, Christina, Tai, Caroline G, Breban, Mallery I, Watkins, Anne E, Samant, Radhika M, Anderson, Deverick J, Metti, Jessica, Khullar, Gaurav, Baits, Rachel, MacKay, Matthew, Salgado, Daisy, Baker, Tim, Dudley, Joel T, Mason, Christopher E, Ho, David D, Grubaugh, Nathan D, Grad, Yonatan H
Published in New England Journal of Medicine (23.12.2021)
Published in New England Journal of Medicine (23.12.2021)
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Journal Article
Web Resource
In silico methods for drug repurposing and pharmacology
Hodos, Rachel A, Kidd, Brian A, Shameer, Khader, Readhead, Ben P, Dudley, Joel T
Published in Wiley interdisciplinary reviews. Systems biology and medicine (01.05.2016)
Published in Wiley interdisciplinary reviews. Systems biology and medicine (01.05.2016)
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Journal Article
Androgen Deprivation Therapy and Future Alzheimer's Disease Risk
Nead, Kevin T, Gaskin, Greg, Chester, Cariad, Swisher-McClure, Samuel, Dudley, Joel T, Leeper, Nicholas J, Shah, Nigam H
Published in Journal of clinical oncology (20.02.2016)
Published in Journal of clinical oncology (20.02.2016)
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Journal Article
The Asthma Mobile Health Study, a large-scale clinical observational study using ResearchKit
Chan, Yu-Feng Yvonne, Wang, Pei, Rogers, Linda, Tignor, Nicole, Zweig, Micol, Hershman, Steven G, Genes, Nicholas, Scott, Erick R, Krock, Eric, Badgeley, Marcus, Edgar, Ron, Violante, Samantha, Wright, Rosalind, Powell, Charles A, Dudley, Joel T, Schadt, Eric E
Published in Nature biotechnology (01.04.2017)
Published in Nature biotechnology (01.04.2017)
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Journal Article
Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets
Suthram, Silpa, Dudley, Joel T, Chiang, Annie P, Chen, Rong, Hastie, Trevor J, Butte, Atul J
Published in PLoS computational biology (01.02.2010)
Published in PLoS computational biology (01.02.2010)
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Journal Article
Discovery and preclinical validation of drug indications using compendia of public gene expression data
Sirota, Marina, Dudley, Joel T, Kim, Jeewon, Chiang, Annie P, Morgan, Alex A, Sweet-Cordero, Alejandro, Sage, Julien, Butte, Atul J
Published in Science translational medicine (17.08.2011)
Published in Science translational medicine (17.08.2011)
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Journal Article
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
Dudley, Joel T, Sirota, Marina, Shenoy, Mohan, Pai, Reetesh K, Roedder, Silke, Chiang, Annie P, Morgan, Alex A, Sarwal, Minnie M, Pasricha, Pankaj Jay, Butte, Atul J
Published in Science translational medicine (17.08.2011)
Published in Science translational medicine (17.08.2011)
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Journal Article
Deep learning predicts hip fracture using confounding patient and healthcare variables
Badgeley, Marcus A., Zech, John R., Oakden-Rayner, Luke, Glicksberg, Benjamin S., Liu, Manway, Gale, William, McConnell, Michael V., Percha, Bethany, Snyder, Thomas M., Dudley, Joel T.
Published in NPJ digital medicine (30.04.2019)
Published in NPJ digital medicine (30.04.2019)
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Journal Article
Isolation and Identification of the Follicular Microbiome: Implications for Acne Research
Hall, Jacob B., Cong, Zhaoyuan, Imamura-Kawasawa, Yuka, Kidd, Brian A., Dudley, Joel T., Thiboutot, Diane M., Nelson, Amanda M.
Published in Journal of investigative dermatology (01.09.2018)
Published in Journal of investigative dermatology (01.09.2018)
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Journal Article
Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis
Ahangari, Farida, Becker, Christine, Foster, Daniel G, Chioccioli, Maurizio, Nelson, Meghan, Beke, Keriann, Wang, Xing, Justet, Aurelien, Adams, Taylor, Readhead, Benjamin, Meador, Carly, Correll, Kelly, Lili, Loukia N, Roybal, Helen M, Rose, Kadi-Ann, Ding, Shuizi, Barnthaler, Thomas, Briones, Natalie, DeIuliis, Giuseppe, Schupp, Jonas C, Li, Qin, Omote, Norihito, Aschner, Yael, Sharma, Lokesh, Kopf, Katrina W, Magnusson, Björn, Hicks, Ryan, Backmark, Anna, Dela Cruz, Charles S, Rosas, Ivan, Cousens, Leslie P, Dudley, Joel T, Kaminski, Naftali, Downey, Gregory P
Published in American journal of respiratory and critical care medicine (15.12.2022)
Published in American journal of respiratory and critical care medicine (15.12.2022)
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Journal Article
Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits
Zhang, Wen, Voloudakis, Georgios, Rajagopal, Veera M., Readhead, Ben, Dudley, Joel T., Schadt, Eric E., Björkegren, Johan L. M., Kim, Yungil, Fullard, John F., Hoffman, Gabriel E., Roussos, Panos
Published in Nature communications (23.08.2019)
Published in Nature communications (23.08.2019)
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