Annotating functional effects of non-coding variants in neuropsychiatric cell types by deep transfer learning
Lai, Boqiao, Qian, Sheng, Zhang, Hanwei, Zhang, Siwei, Kozlova, Alena, Duan, Jubao, Xu, Jinbo, He, Xin
Published in PLoS computational biology (01.05.2022)
Published in PLoS computational biology (01.05.2022)
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Journal Article
The role of genetics in the etiology of schizophrenia
Gejman, Pablo V, Sanders, Alan R, Duan, Jubao
Published in The Psychiatric clinics of North America (01.03.2010)
Published in The Psychiatric clinics of North America (01.03.2010)
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Journal Article
Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study
Shi, Jianxin, Hua, Xing, Zhu, Bin, Ravichandran, Sarangan, Wang, Mingyi, Nguyen, Cu, Brodie, Seth A, Palleschi, Alessandro, Alloisio, Marco, Pariscenti, Gianluca, Jones, Kristine, Zhou, Weiyin, Bouk, Aaron J, Boland, Joseph, Hicks, Belynda, Risch, Adam, Bennett, Hunter, Luke, Brian T, Song, Lei, Duan, Jubao, Liu, Pengyuan, Kohno, Takashi, Chen, Qingrong, Meerzaman, Daoud, Marconett, Crystal, Laird-Offringa, Ite, Mills, Ian, Caporaso, Neil E, Gail, Mitchell H, Pesatori, Angela C, Consonni, Dario, Bertazzi, Pier Alberto, Chanock, Stephen J, Landi, Maria Teresa
Published in PLoS medicine (06.12.2016)
Published in PLoS medicine (06.12.2016)
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Journal Article
Common variants on chromosome 6p22.1 are associated with schizophrenia
Gejman, Pablo V, Shi, Jianxin, Levinson, Douglas F, Duan, Jubao, Sanders, Alan R, Zheng, Yonglan, Pe'er, Itsik, Dudbridge, Frank, Holmans, Peter A, Whittemore, Alice S, Mowry, Bryan J, Olincy, Ann, Amin, Farooq, Cloninger, C. Robert, Silverman, Jeremy M, Buccola, Nancy G, Byerley, William F, Black, Donald W, Crowe, Raymond R, Oksenberg, Jorge R, Mirel, Daniel B, Kendler, Kenneth S, Freedman, Robert
Published in Nature (London) (06.08.2009)
Published in Nature (London) (06.08.2009)
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Journal Article
Open Chromatin Profiling in hiPSC-Derived Neurons Prioritizes Functional Noncoding Psychiatric Risk Variants and Highlights Neurodevelopmental Loci
Forrest, Marc P., Zhang, Hanwen, Moy, Winton, McGowan, Heather, Leites, Catherine, Dionisio, Leonardo E., Xu, Zihui, Shi, Jianxin, Sanders, Alan R., Greenleaf, William J., Cowan, Chad A., Pang, Zhiping P., Gejman, Pablo V., Penzes, Peter, Duan, Jubao
Published in Cell stem cell (07.09.2017)
Published in Cell stem cell (07.09.2017)
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Journal Article
BIN1 is a key regulator of proinflammatory and neurodegeneration-related activation in microglia
Sudwarts, Ari, Ramesha, Supriya, Gao, Tianwen, Ponnusamy, Moorthi, Wang, Shuai, Hansen, Mitchell, Kozlova, Alena, Bitarafan, Sara, Kumar, Prateek, Beaulieu-Abdelahad, David, Zhang, Xiaolin, Collier, Lisa, Szekeres, Charles, Wood, Levi B, Duan, Jubao, Thinakaran, Gopal, Rangaraju, Srikant
Published in Molecular neurodegeneration (07.05.2022)
Published in Molecular neurodegeneration (07.05.2022)
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Journal Article
Copy Number Variants in Schizophrenia: Confirmation of Five Previous Findings and New Evidence for 3q29 Microdeletions and VIPR2 Duplications
Levinson, Douglas F., Duan, Jubao, Oh, Sang, Wang, Kai, Sanders, Alan R., Shi, Jianxin, Zhang, Nancy, Mowry, Bryan J., Olincy, Ann, Amin, Farooq, Cloninger, C. Robert, Silverman, Jeremy M., Buccola, Nancy G., Byerley, William F., Black, Donald W., Kendler, Kenneth S., Freedman, Robert, Dudbridge, Frank, Pe'er, Itsik, Hakonarson, Hakon, Bergen, Sarah E., Fanous, Ayman H., Holmans, Peter A., Gejman, Pablo V.
Published in The American journal of psychiatry (01.03.2011)
Published in The American journal of psychiatry (01.03.2011)
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Journal Article
Winner's Curse Correction and Variable Thresholding Improve Performance of Polygenic Risk Modeling Based on Genome-Wide Association Study Summary-Level Data
Shi, Jianxin, Park, Ju-Hyun, Duan, Jubao, Berndt, Sonja T, Moy, Winton, Yu, Kai, Song, Lei, Wheeler, William, Hua, Xing, Silverman, Debra, Garcia-Closas, Montserrat, Hsiung, Chao Agnes, Figueroa, Jonine D, Cortessis, Victoria K, Malats, Núria, Karagas, Margaret R, Vineis, Paolo, Chang, I-Shou, Lin, Dongxin, Zhou, Baosen, Seow, Adeline, Matsuo, Keitaro, Hong, Yun-Chul, Caporaso, Neil E, Wolpin, Brian, Jacobs, Eric, Petersen, Gloria M, Klein, Alison P, Li, Donghui, Risch, Harvey, Sanders, Alan R, Hsu, Li, Schoen, Robert E, Brenner, Hermann, Stolzenberg-Solomon, Rachael, Gejman, Pablo, Lan, Qing, Rothman, Nathaniel, Amundadottir, Laufey T, Landi, Maria Teresa, Levinson, Douglas F, Chanock, Stephen J, Chatterjee, Nilanjan
Published in PLoS genetics (01.12.2016)
Published in PLoS genetics (01.12.2016)
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Journal Article
Reversal of dendritic phenotypes in 16p11.2 microduplication mouse model neurons by pharmacological targeting of a network hub
Blizinsky, Katherine D., Diaz-Castro, Blanca, Forrest, Marc P., Schürmann, Britta, Bach, Anthony P., Martin-de-Saavedra, Maria Dolores, Wang, Lei, Csernansky, John G., Duan, Jubao, Penzes, Peter
Published in Proceedings of the National Academy of Sciences - PNAS (26.07.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (26.07.2016)
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Journal Article
Sex-specific nicotine sensitization and imprinting of self-administration in rats inform GWAS findings on human addiction phenotypes
Kozlova, Alena, Butler, 3rd, Robert R, Zhang, Siwei, Ujas, Thomas, Zhang, Hanwen, Steidl, Stephan, Sanders, Alan R, Pang, Zhiping P, Vezina, Paul, Duan, Jubao
Published in Neuropsychopharmacology (New York, N.Y.) (01.09.2021)
Published in Neuropsychopharmacology (New York, N.Y.) (01.09.2021)
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Journal Article
Function and development of interneurons involved in brain tissue oxygen regulation
Aksenov, Daniil P, Gascoigne, David A, Duan, Jubao, Drobyshevsky, Alexander
Published in Frontiers in molecular neuroscience (24.11.2022)
Published in Frontiers in molecular neuroscience (24.11.2022)
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Journal Article
No Significant Association of 14 Candidate Genes With Schizophrenia in a Large European Ancestry Sample: Implications for Psychiatric Genetics
Sanders, Alan R., Duan, Jubao, Levinson, Douglas F., Shi, Jianxin, He, Deli, Hou, Cuiping, Burrell, Gregory J., Rice, John P., Nertney, Deborah A., Olincy, Ann, Rozic, Pablo, Vinogradov, Sophia, Buccola, Nancy G., Mowry, Bryan J., Freedman, Robert, Amin, Farooq, Black, Donald W., Silverman, Jeremy M., Byerley, William F., Crowe, Raymond R., Cloninger, C. Robert, Martinez, Maria, Gejman, Pablo V.
Published in The American journal of psychiatry (01.04.2008)
Published in The American journal of psychiatry (01.04.2008)
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Journal Article
Transcriptome study of differential expression in schizophrenia
Sanders, Alan R, Göring, Harald H H, Duan, Jubao, Drigalenko, Eugene I, Moy, Winton, Freda, Jessica, He, Deli, Shi, Jianxin, Gejman, Pablo V
Published in Human molecular genetics (15.12.2013)
Published in Human molecular genetics (15.12.2013)
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Journal Article
Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue
Shi, Jianxin, Marconett, Crystal N., Duan, Jubao, Hyland, Paula L., Li, Peng, Wang, Zhaoming, Wheeler, William, Zhou, Beiyun, Campan, Mihaela, Lee, Diane S., Huang, Jing, Zhou, Weiyin, Triche, Tim, Amundadottir, Laufey, Warner, Andrew, Hutchinson, Amy, Chen, Po-Han, Chung, Brian S. I., Pesatori, Angela C., Consonni, Dario, Bertazzi, Pier Alberto, Bergen, Andrew W., Freedman, Mathew, Siegmund, Kimberly D., Berman, Benjamin P., Borok, Zea, Chatterjee, Nilanjan, Tucker, Margaret A., Caporaso, Neil E., Chanock, Stephen J., Laird-Offringa, Ite A., Landi, Maria Teresa
Published in Nature communications (27.02.2014)
Published in Nature communications (27.02.2014)
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Journal Article
Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
Duan, Jubao, Wainwright, Mark S., Comeron, Josep M., Saitou, Naruya, Sanders, Alan R., Gelernter, Joel, Gejman, Pablo V.
Published in Human molecular genetics (01.02.2003)
Published in Human molecular genetics (01.02.2003)
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Journal Article
A Rare Functional Noncoding Variant at the GWAS-Implicated MIR137/MIR2682 Locus Might Confer Risk to Schizophrenia and Bipolar Disorder
Duan, Jubao, Shi, Jianxin, Fiorentino, Alessia, Leites, Catherine, Chen, Xiangning, Moy, Winton, Chen, Jingchun, Alexandrov, Boian S., Usheva, Anny, He, Deli, Freda, Jessica, O’Brien, Niamh L., Gejman, Pablo V., Sanders, Alan R., Duan, Jubao, Levinson, Douglas F., Shi, Jianxin, Buccola, Nancy G., Mowry, Bryan J., Freedman, Robert, Olincy, Ann, Amin, Farooq, Black, Donald W., Silverman, Jeremy M., Byerley, William F., Svrakic, Dragan M., Cloninger, C. Robert, Pato, Michele T., Sobell, Janet L., Medeiros, Helena, Abbott, Colony, Skar, Brooke, Buckley, Peter F., Bromet, Evelyn J., Escamilla, Michael A., Fanous, Ayman H., Lehrer, Douglas S., Macciardi, Fabio, Malaspina, Dolores, McCarroll, Steve A., Marder, Stephen R., Moran, Jennifer, Morley, Christopher P., Nicolini, Humberto, Perkins, Diana O., Purcell, Shaun M., Rapaport, Mark H., Sklar, Pamela, Smoller, Jordan W., Knowles, James A., Pato, Carlos N., McQuillin, Andrew, Sanders, Alan R., Gershon, Elliot S., DeLisi, Lynn E., Bishop, Alan R., Gurling, Hugh M.D., Pato, Michele T., Levinson, Douglas F., Kendler, Kenneth S., Pato, Carlos N., Gejman, Pablo V.
Published in American journal of human genetics (04.12.2014)
Published in American journal of human genetics (04.12.2014)
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Journal Article
Parental Origin of Interstitial Duplications at 15q11.2-q13.3 in Schizophrenia and Neurodevelopmental Disorders
Isles, Anthony R, Ingason, Andrés, Lowther, Chelsea, Walters, James, Gawlick, Micha, Stöber, Gerald, Rees, Elliott, Martin, Joanna, Little, Rosie B, Potter, Harry, Georgieva, Lyudmila, Pizzo, Lucilla, Ozaki, Norio, Aleksic, Branko, Kushima, Itaru, Ikeda, Masashi, Iwata, Nakao, Levinson, Douglas F, Gejman, Pablo V, Shi, Jianxin, Sanders, Alan R, Duan, Jubao, Willis, Joseph, Sisodiya, Sanjay, Costain, Gregory, Werge, Thomas M, Degenhardt, Franziska, Giegling, Ina, Rujescu, Dan, Hreidarsson, Stefan J, Saemundsen, Evald, Ahn, Joo Wook, Ogilvie, Caroline, Girirajan, Santhosh D, Stefansson, Hreinn, Stefansson, Kari, O'Donovan, Michael C, Owen, Michael J, Bassett, Anne, Kirov, George
Published in PLoS genetics (06.05.2016)
Published in PLoS genetics (06.05.2016)
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