Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome
Zupancic, Margaret L, Cantarel, Brandi L, Liu, Zhenqiu, Drabek, Elliott F, Ryan, Kathleen A, Cirimotich, Shana, Jones, Cheron, Knight, Rob, Walters, William A, Knights, Daniel, Mongodin, Emmanuel F, Horenstein, Richard B, Mitchell, Braxton D, Steinle, Nanette, Snitker, Soren, Shuldiner, Alan R, Fraser, Claire M
Published in PloS one (15.08.2012)
Published in PloS one (15.08.2012)
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Simultaneous transcriptional profiling of bacteria and their host cells
Humphrys, Michael S, Creasy, Todd, Sun, Yezhou, Shetty, Amol C, Chibucos, Marcus C, Drabek, Elliott F, Fraser, Claire M, Farooq, Umar, Sengamalay, Naomi, Ott, Sandy, Shou, Huizhong, Bavoil, Patrik M, Mahurkar, Anup, Myers, Garry S A
Published in PloS one (04.12.2013)
Published in PloS one (04.12.2013)
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Journal Article
Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses
Eloe-Fadrosh, Emiley A, McArthur, Monica A, Seekatz, Anna M, Drabek, Elliott F, Rasko, David A, Sztein, Marcelo B, Fraser, Claire M
Published in PloS one (24.04.2013)
Published in PloS one (24.04.2013)
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Journal Article
Transcriptional attenuation controls macrolide inducible efflux and resistance in Streptococcus pneumoniae and in other Gram-positive bacteria containing mef/mel(msr(D)) elements
Chancey, Scott T, Bai, Xianhe, Kumar, Nikhil, Drabek, Elliott F, Daugherty, Sean C, Colon, Thomas, Ott, Sandra, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke J, Fraser, Claire M, Tettelin, Hervé, Stephens, David S
Published in PloS one (19.02.2015)
Published in PloS one (19.02.2015)
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Journal Article
Functional dynamics of the gut microbiome in elderly people during probiotic consumption
Eloe-Fadrosh, Emiley A, Brady, Arthur, Crabtree, Jonathan, Drabek, Elliott F, Ma, Bing, Mahurkar, Anup, Ravel, Jacques, Haverkamp, Miriam, Fiorino, Anne-Maria, Botelho, Christine, Andreyeva, Irina, Hibberd, Patricia L, Fraser, Claire M
Published in mBio (14.04.2015)
Published in mBio (14.04.2015)
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Journal Article
Association of a Novel Mutation in the Plasmodium falciparum Chloroquine Resistance Transporter With Decreased Piperaquine Sensitivity
Agrawal, Sonia, Moser, Kara A., Morton, Lindsay, Cummings, Michael P., Parihar, Ankita, Dwivedi, Ankit, Shetty, Amol C., Drabek, Elliott F., Jacob, Christopher G., Henrich, Philipp P., Parobek, Christian M., Jongsakul, Krisada, Huy, Rekol, Spring, Michele D., Lanteri, Charlotte A., Chaorattanakawee, Suwanna, Lon, Chanthap, Fukuda, Mark M., Saunders, David L., Fidock, David A., Lin, Jessica T., Juliano, Jonathan J., Plowe, Christopher V., Silva, Joana C., Takala-Harrison, Shannon
Published in The Journal of infectious diseases (15.08.2017)
Published in The Journal of infectious diseases (15.08.2017)
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The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence
Norling, Martin, Bishop, Richard P, Pelle, Roger, Qi, Weihong, Henson, Sonal, Drábek, Elliott F, Tretina, Kyle, Odongo, David, Mwaura, Stephen, Njoroge, Thomas, Bongcam-Rudloff, Erik, Daubenberger, Claudia A, Silva, Joana C
Published in BMC genomics (24.09.2015)
Published in BMC genomics (24.09.2015)
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Journal Article
Convergent antibody evolution and clonotype expansion following influenza virus vaccination
Forgacs, David, Abreu, Rodrigo B, Sautto, Giuseppe A, Kirchenbaum, Greg A, Drabek, Elliott, Williamson, Kevin S, Kim, Dongkyoon, Emerling, Daniel E, Ross, Ted M
Published in PloS one (22.02.2021)
Published in PloS one (22.02.2021)
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Journal Article
New var reconstruction algorithm exposes high var sequence diversity in a single geographic location in Mali
Dara, Antoine, Drábek, Elliott F, Travassos, Mark A, Moser, Kara A, Delcher, Arthur L, Su, Qi, Hostelley, Timothy, Coulibaly, Drissa, Daou, Modibo, Dembele, Ahmadou, Diarra, Issa, Kone, Abdoulaye K, Kouriba, Bourema, Laurens, Matthew B, Niangaly, Amadou, Traore, Karim, Tolo, Youssouf, Fraser, Claire M, Thera, Mahamadou A, Djimde, Abdoulaye A, Doumbo, Ogobara K, Plowe, Christopher V, Silva, Joana C
Published in Genome medicine (28.03.2017)
Published in Genome medicine (28.03.2017)
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Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation
Mongodin, Emmanuel F, Casjens, Sherwood R, Bruno, John F, Xu, Yun, Drabek, Elliott Franco, Riley, David R, Cantarel, Brandi L, Pagan, Pedro E, Hernandez, Yozen A, Vargas, Levy C, Dunn, John J, Schutzer, Steven E, Fraser, Claire M, Qiu, Wei-Gang, Luft, Benjamin J
Published in BMC genomics (10.10.2013)
Published in BMC genomics (10.10.2013)
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Journal Article
Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity
Palmateer, Nicholas C, Tretina, Kyle, Orvis, Joshua, Ifeonu, Olukemi O, Crabtree, Jonathan, Drabék, Elliott, Pelle, Roger, Awino, Elias, Gotia, Hanzel T, Munro, James B, Tallon, Luke, Morrison, W Ivan, Daubenberger, Claudia A, Nene, Vish, Knowles, Donald P, Bishop, Richard P, Silva, Joana C
Published in PLoS neglected tropical diseases (01.10.2020)
Published in PLoS neglected tropical diseases (01.10.2020)
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A new method for sequencing the hypervariable Plasmodium falciparum gene var2csa from clinical samples
Dara, Antoine, Travassos, Mark A, Adams, Matthew, Schaffer DeRoo, Sarah, Drábek, Elliott F, Agrawal, Sonia, Laufer, Miriam K, Plowe, Christopher V, Silva, Joana C
Published in Malaria journal (17.08.2017)
Published in Malaria journal (17.08.2017)
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Journal Article
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential
Moser, Kara A, Drábek, Elliott F, Dwivedi, Ankit, Stucke, Emily M, Crabtree, Jonathan, Dara, Antoine, Shah, Zalak, Adams, Matthew, Li, Tao, Rodrigues, Priscila T, Koren, Sergey, Phillippy, Adam M, Munro, James B, Ouattara, Amed, Sparklin, Benjamin C, Dunning Hotopp, Julie C, Lyke, Kirsten E, Sadzewicz, Lisa, Tallon, Luke J, Spring, Michele D, Jongsakul, Krisada, Lon, Chanthap, Saunders, David L, Ferreira, Marcelo U, Nyunt, Myaing M, Laufer, Miriam K, Travassos, Mark A, Sauerwein, Robert W, Takala-Harrison, Shannon, Fraser, Claire M, Sim, B Kim Lee, Hoffman, Stephen L, Plowe, Christopher V, Silva, Joana C
Published in Genome medicine (08.01.2020)
Published in Genome medicine (08.01.2020)
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Journal Article
Genome Sequences of the Zoonotic Pathogens Chlamydia psittaci 6BC and Cal10
GRINBLAT-HUSE, Valerie, DRABEK, Elliott F, MYERS, Garry S. A, HUOT CREASY, Heather, DAUGHERTY, Sean C, JONES, Kristine M, SANTANA-CRUZ, Ivette, TALLON, Luke J, READ, Timothy D, HATCH, Thomas P, BAVOIL, Patrik
Published in Journal of Bacteriology (01.08.2011)
Published in Journal of Bacteriology (01.08.2011)
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Abstract P2-01-11: Single-cell sequencing of the blood T cell repertoire before and after trastuzumab treatment in early stage HER2+ breast cancer
Vivian, John, Walter, Kimberly, Drabek, Elliott, Haaser, Nicole, Levin, Maren K., Rodriguez, Esther San Roman, Peck, Kendra, Nguyen, Ngan, Millward, Carl, Benjamin, Jonathan, Robinson, William H., O'Shaughnessy, Joyce A.
Published in Cancer research (Chicago, Ill.) (15.02.2022)
Published in Cancer research (Chicago, Ill.) (15.02.2022)
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Abstract 615: Increased somatic hypermutation in the immunoglobulin sequences of melanoma patients who have durable response to checkpoint inhibitor therapy
Nguyen, Ngan, Mamchak, Alusha, Severgnini, Mariano, Williamson, Kevin S., Wu, Xinqi, Drabek, Elliott F., Manos, Michael, Chen, Xiaomu, Tang, Xiaobin, Amiri, Zoe, Carroll, Chantia, Leung, Yvonne, Kim, Dongkyoon, Volkmuth, Wayne, Greenberg, Norman, Emerling, Daniel, Robinson, William H., Cavet, Guy, Hodi, F. Stephen
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Genome Sequence of Mycoplasma feriruminatoris sp. nov., a Fast-Growing Mycoplasma Species
Fischer, Anne, Santana-Cruz, Ivette, Giglio, Michelle, Nadendla, Suvarna, Drabek, Elliott, Vilei, Edy M, Frey, Joachim, Jores, Joerg
Published in Genome announcements (Washington, DC) (01.01.2013)
Published in Genome announcements (Washington, DC) (01.01.2013)
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Journal Article
Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo- derived strain and reveals exceptional intra-specific genetic diversity
Palmateer, Nicholas C, Tretina, Kyle, Orvis, Joshua, Ifeonu, Olukemi O, Crabtree, Jonathan, Elliott Drabék, Pelle, Roger, Awino, Elias, Gotia, Hanzel T, Munro, James B, Tallon, Luke, Morrison, W Ivan, Daubenberger, Claudia A, Nene, Vish, Knowles, Donald P, Bishop, Richard P, Silva, Joana C
Published in bioRxiv (13.04.2020)
Published in bioRxiv (13.04.2020)
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Paper
Transcriptional Attenuation Controls Macrolide Inducible Efflux and Resistance in Streptococcus pneumoniae and in Other Gram-Positive Bacteria Containing mef/mel(msr(D)) Elements: e0116254
Chancey, Scott T, Bai, Xianhe, Kumar, Nikhil, Drabek, Elliott F, Daugherty, Sean C, Colon, Thomas, Ott, Sandra, Sengamalay, Naomi, Sadzewicz, Lisa, Tallon, Luke J
Published in PloS one (01.02.2015)
Published in PloS one (01.02.2015)
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