by Fulco, Charles P., Nasser, Joseph, Jones, Thouis R., Munson, Glen, Bergman, Drew T., Subramanian, Vidya, Grossman, Sharon R., Anyoha, Rockwell, Doughty, Benjamin R., Patwardhan, Tejal A., Nguyen, Tung H., Kane, Michael, Perez, Elizabeth M., Durand, Neva C., Lareau, Caleb A., Stamenova, Elena K., Aiden, Erez Lieberman, Lander, Eric S., Engreitz, Jesse M.
Published in Nature genetics (01.12.2019)

by Marshall, Jamie L., Doughty, Benjamin R., Subramanian, Vidya, Guckelberger, Philine, Wang, Qingbo, Chen, Linlin M., Rodriques, Samuel G., Zhang, Kaite, Fulco, Charles P., Nasser, Joseph, Grinkevich, Elizabeth J., Noel, Teia, Mangiameli, Sarah, Bergman, Drew T., Greka, Anna, Lander, Eric S., Chen, Fei, Engreitz, Jesse M.
Published in Proceedings of the National Academy of Sciences - PNAS (29.12.2020)

by Yao, David, Tycko, Josh, Oh, Jin Woo, Bounds, Lexi R., Gosai, Sager J., Lataniotis, Lazaros, Mackay-Smith, Ava, Doughty, Benjamin R., Gabdank, Idan, Schmidt, Henri, Guerrero-Altamirano, Tania, Siklenka, Keith, Guo, Katherine, White, Alexander D., Youngworth, Ingrid, Andreeva, Kalina, Ren, Xingjie, Barrera, Alejandro, Luo, Yunhai, Yardımcı, Galip Gürkan, Tewhey, Ryan, Kundaje, Anshul, Greenleaf, William J., Sabeti, Pardis C., Leslie, Christina, Pritykin, Yuri, Moore, Jill E., Beer, Michael A., Gersbach, Charles A., Reddy, Timothy E., Shen, Yin, Engreitz, Jesse M., Bassik, Michael C., Reilly, Steven K.
Published in Nature methods (01.04.2024)

by Nasser, Joseph, Bergman, Drew T., Fulco, Charles P., Guckelberger, Philine, Doughty, Benjamin R., Patwardhan, Tejal A., Jones, Thouis R., Nguyen, Tung H., Ulirsch, Jacob C., Lekschas, Fritz, Mualim, Kristy, Natri, Heini M., Weeks, Elle M., Munson, Glen, Kane, Michael, Kang, Helen Y., Cui, Ang, Ray, John P., Eisenhaure, Thomas M., Collins, Ryan L., Dey, Kushal, Pfister, Hanspeter, Price, Alkes L., Epstein, Charles B., Kundaje, Anshul, Xavier, Ramnik J., Daly, Mark J., Huang, Hailiang, Finucane, Hilary K., Hacohen, Nir, Lander, Eric S., Engreitz, Jesse M.
Published in Nature (London) (13.05.2021)

by Doughty, Benjamin R, Hinks, Michaela M, Schaepe, Julia M, Marinov, Georgi K, Thurm, Abby R, Rios-Martinez, Carolina, Parks, Benjamin E, Tan, Yingxuan, Marklund, Emil, Dubocanin, Danilo, Bintu, Lacramioara, Greenleaf, William J
Published in bioRxiv (04.02.2024)

by Fujimori, Taihei, Rios-Martinez, Carolina, Thurm, Abby R, Hinks, Michaela M, Doughty, Benjamin R, Sinha, Joydeb, Le, Derek, Hafner, Antonina, Greenleaf, William J, Boettiger, Alistair N, Bintu, Lacramioara
Published in bioRxiv (05.10.2023)

by Guckelberger, Philine, Doughty, Benjamin R, Munson, Glen, Rao, Suhas S P, Tan, Yingxuan, Cai, Xiangmeng Shawn, Fulco, Charles P, Nasser, Joseph, Mualim, Kristy S, Bergman, Drew T, Ray, Judhajeet, Jagoda, Evelyn, Munger, Chad J, Gschwind, Andreas R, Sheth, Maya U, Tan, Anthony S, Steinmetz, Lars M, Lander, Eric S, Meissner, Alexander, Aiden, Erez Lieberman, Engreitz, Jesse M
Published in bioRxiv (12.07.2024)

by Engreitz, Jesse M., Lawson, Heather A., Singh, Harinder, Starita, Lea M., Hon, Gary C., Carter, Hannah, Sahni, Nidhi, Reddy, Timothy E., Lin, Xihong, Li, Yun, Munshi, Nikhil V., Chahrour, Maria H., Boyle, Alan P., Hitz, Benjamin C., Mortazavi, Ali, Craven, Mark, Mohlke, Karen L., Pinello, Luca, Wang, Ting, Kundaje, Anshul, Yue, Feng, Cody, Sarah, Farrell, Nina P., Love, Michael I., Muffley, Lara A., Pazin, Michael J., Reese, Fairlie, Van Buren, Eric, Dey, Kushal K., Kircher, Martin, Ma, Jian, Radivojac, Predrag, Balliu, Brunilda, Williams, Brian A., Huangfu, Danwei, Park, Chong Y., Quertermous, Thomas, Das, Jishnu, Calderwood, Michael A., Fowler, Douglas M., Vidal, Marc, Ferreira, Lucas, Mooney, Sean D., Pejaver, Vikas, Zhao, Jingjing, Gazal, Steven, Koch, Evan, Reilly, Steven K., Sunyaev, Shamil, Carpenter, Anne E., Buenrostro, Jason D., Leslie, Christina S., Savage, Rachel E., Giric, Stefanija, Luo, Chongyuan, Plath, Kathrin, Barrera, Alejandro, Schubach, Max, Gschwind, Andreas R., Moore, Jill E., Ahituv, Nadav, Yi, S. Stephen, Hallgrimsdottir, Ingileif, Gaulton, Kyle J., Sakaue, Saori, Booeshaghi, Sina, Mattei, Eugenio, Nair, Surag, Pachter, Lior, Wang, Austin T., Shendure, Jay, Agarwal, Vikram, Blair, Andrew, Chalkiadakis, Theofilos, Chardon, Florence M., Dash, Pyaree M., Deng, Chengyu, Hamazaki, Nobuhiko, Keukeleire, Pia, Kubo, Connor, Lalanne, Jean-Benoît, Maass, Thorben, Martin, Beth, McDiarmid, Troy A., Nobuhara, Mai, Page, Nicholas F., Regalado, Sam, Sims, Jasmine, Ushiki, Aki, Best, Sabrina M., Boyle, Gabe, Camp, Nathan, Casadei, Silvia, Da, Estelle Y., Dawood, Moez, Dawson, Samantha C., Fayer, Shawn, Hamm, Audrey, James, Richard G., Jarvik, Gail P.
Published in Nature (London) (05.09.2024)

by Martyn, Gabriella E, Montgomery, Michael T, Jones, Hank, Guo, Katherine, Doughty, Benjamin R, Linder, Johannes, Chen, Ziwei, Cochran, Kelly, Lawrence, Kathryn A, Munson, Glen, Pampari, Anusri, Fulco, Charles P, Kelley, David R, Lander, Eric S, Kundaje, Anshul, Engreitz, Jesse M
Published in bioRxiv : the preprint server for biology (21.12.2023)

by Gschwind, Andreas R, Mualim, Kristy S, Karbalayghareh, Alireza, Sheth, Maya U, Dey, Kushal K, Jagoda, Evelyn, Nurtdinov, Ramil N, Xi, Wang, Tan, Anthony S, Jones, Hank, Ma, X Rosa, Yao, David, Nasser, Joseph, Avsec, Žiga, James, Benjamin T, Shamim, Muhammad S, Durand, Neva C, Rao, Suhas S P, Mahajan, Ragini, Doughty, Benjamin R, Andreeva, Kalina, Ulirsch, Jacob C, Fan, Kaili, Perez, Elizabeth M, Nguyen, Tri C, Kelley, David R, Finucane, Hilary K, Moore, Jill E, Weng, Zhiping, Kellis, Manolis, Bassik, Michael C, Price, Alkes L, Beer, Michael A, Guigó, Roderic, Stamatoyannopoulos, John A, Lieberman Aiden, Erez, Greenleaf, William J, Leslie, Christina S, Steinmetz, Lars M, Kundaje, Anshul, Engreitz, Jesse M
Published in bioRxiv : the preprint server for biology (13.11.2023)

by Martyn, Gabriella E, Montgomery, Michael T, Jones, Hank, Guo, Katherine, Doughty, Benjamin R, Linder, Johannes, Chen, Ziwei, Cochran, Kelly, Lawrence, Kathryn A, Munson, Glen, Pampari, Anusri, Fulco, Charles P, Kelley, David R, Lander, Eric S, Kundaje, Anshul, Engreitz, Jesse M
Published in bioRxiv (21.12.2023)

by Yao, David, Tycko, Josh, Oh, Woo, Bounds, Lexi R, Gosai, Sager J, Lataniotis, Lazaros, Mackay-Smith, Ava, Doughty, Benjamin R, Gabdank, Idan, Schmidt, Henri, Youngworth, Ingrid, Andreeva, Kalina, Ren, Xingjie, Barrera, Alejandro, Luo, Yunahi, Siklenka, Keith, Galip Gurkan Yardimci, The Encode4 Consortium, Ryan Tewhey, Kundaje, Anshul, Greenleaf, William J, Sabeti, Pardis C, Leslie, Christina, Pritykin, Yuri, Moore, Jill E, Beer, Michael A, Gersbach, Charles, Reddy, Timothy E, Shen, Yin, Engreitz, Jesse M, Bassik, Michael C, Reilly, Steven K
Published in bioRxiv (22.12.2022)

by Gschwind, Andreas R, Mualim, Kristy S, Karbalayghareh, Alireza, Sheth, Maya U, Dey, Kushal K, Jagoda, Evelyn, Nurtdinov, Ramil N, Wang, Xi, Tan, Anthony S, Jones, Hank, X Rosa Ma, Yao, David, Nasser, Joseph, Avsec, Ziga, James, Benjamin T, Shamim, Muhammad S, Durand, Neva C, Rao, Suhas S P, Mahajan, Ragini, Doughty, Benjamin R, Andreeva, Kalina, Ulirsch, Jacob C, Fan, Kaili, Perez, Elizabeth M, Nguyen, Tri C, Kelley, David R, Finucane, Hilary K, Moore, Jill E, Weng, Zhiping, Kellis, Manolis, Bassik, Michael C, Price, Alkes L, Beer, Michael A, Guigo, Roderic, Stamatoyannopoulos, John A, Erez Lieberman Aiden, Greenleaf, William J, Leslie, Christina S, Steinmetz, Lars M, Kundaje, Anshul, Engreitz, Jesse M
Published in bioRxiv (13.11.2023)

by Marshall, Jamie L, Doughty, Benjamin R, Subramanian, Vidya, Wang, Qingbo, Chen, Linlin M, Rodriques, Samuel G, Zhang, Kaite, Guckelberger, Philine, Fulco, Charles P, Nasser, Joseph, Grinkevich, Elizabeth J, Noel, Teia, Mangiameli, Sarah, Greka, Anna, Lander, Eric S, Chen, Fei, Engreitz, Jesse M
Published in bioRxiv (02.06.2020)

by Nasser, Joseph, Bergman, Drew T, Fulco, Charles P, Guckelberger, Philine, Doughty, Benjamin R, Patwardhan, Tejal A, Jones, Thouis R, Nguyen, Tung H, Ulirsch, Jacob C, Natri, Heini M, Weeks, Elle M, Munson, Glen, Kane, Michael, Kang, Helen Y, Cui, Ang, Ray, John P, Eisenhaure, Tom M, Mualim, Kristy, Collins, Ryan L, Dey, Kushal, Price, Alkes L, Epstein, Charles B, Kundaje, Anshul, Xavier, Ramnik J, Daly, Mark J, Huang, Hailiang, Finucane, Hilary K, Hacohen, Nir, Lander, Eric S, Engreitz, Jesse M
Published in bioRxiv (03.09.2020)