Learning cellular morphology with neural networks
Schubert, Philipp J., Dorkenwald, Sven, Januszewski, Michał, Jain, Viren, Kornfeld, Joergen
Published in Nature communications (21.06.2019)
Published in Nature communications (21.06.2019)
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Automated synaptic connectivity inference for volume electron microscopy
Dorkenwald, Sven, Schubert, Philipp J, Killinger, Marius F, Urban, Gregor, Mikula, Shawn, Svara, Fabian, Kornfeld, Joergen
Published in Nature methods (01.04.2017)
Published in Nature methods (01.04.2017)
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FlyWire: online community for whole-brain connectomics
Dorkenwald, Sven, McKellar, Claire E., Macrina, Thomas, Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Popovych, Sergiy, Mitchell, Eric, Nehoran, Barak, Jia, Zhen, Bae, J. Alexander, Mu, Shang, Ih, Dodam, Castro, Manuel, Ogedengbe, Oluwaseun, Halageri, Akhilesh, Kuehner, Kai, Sterling, Amy R., Ashwood, Zoe, Zung, Jonathan, Brittain, Derrick, Collman, Forrest, Schneider-Mizell, Casey, Jordan, Chris, Silversmith, William, Baker, Christa, Deutsch, David, Encarnacion-Rivera, Lucas, Kumar, Sandeep, Burke, Austin, Bland, Doug, Gager, Jay, Hebditch, James, Koolman, Selden, Moore, Merlin, Morejohn, Sarah, Silverman, Ben, Willie, Kyle, Willie, Ryan, Yu, Szi-chieh, Murthy, Mala, Seung, H. Sebastian
Published in Nature methods (01.01.2022)
Published in Nature methods (01.01.2022)
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Binary and analog variation of synapses between cortical pyramidal neurons
Dorkenwald, Sven, Turner, Nicholas L, Macrina, Thomas, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Bodor, Agnes L, Bleckert, Adam A, Brittain, Derrick, Kemnitz, Nico, Silversmith, William M, Ih, Dodam, Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Yu, Szi-Chieh, Popovych, Sergiy, Wong, William, Castro, Manuel, Jordan, Chris S, Wilson, Alyssa M, Froudarakis, Emmanouil, Buchanan, JoAnn, Takeno, Marc M, Torres, Russel, Mahalingam, Gayathri, Collman, Forrest, Schneider-Mizell, Casey M, Bumbarger, Daniel J, Li, Yang, Becker, Lynne, Suckow, Shelby, Reimer, Jacob, Tolias, Andreas S, Macarico da Costa, Nuno, Reid, R Clay, Seung, H Sebastian
Published in eLife (16.11.2022)
Published in eLife (16.11.2022)
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Structure and function of axo-axonic inhibition
Schneider-Mizell, Casey M, Bodor, Agnes L, Collman, Forrest, Brittain, Derrick, Bleckert, Adam, Dorkenwald, Sven, Turner, Nicholas L, Macrina, Thomas, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Zhuang, Jun, Nandi, Anirban, Hu, Brian, Buchanan, JoAnn, Takeno, Marc M, Torres, Russel, Mahalingam, Gayathri, Bumbarger, Daniel J, Li, Yang, Chartrand, Thomas, Kemnitz, Nico, Silversmith, William M, Ih, Dodam, Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Popovych, Sergiy, Wong, William, Castro, Manuel, Jordan, Chris S, Froudarakis, Emmanouil, Becker, Lynne, Suckow, Shelby, Reimer, Jacob, Tolias, Andreas S, Anastassiou, Costas A, Seung, H Sebastian, Reid, R Clay, Costa, Nuno Maçarico da
Published in eLife (01.12.2021)
Published in eLife (01.12.2021)
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Neural network organization for courtship-song feature detection in Drosophila
Baker, Christa A., McKellar, Claire, Pang, Rich, Nern, Aljoscha, Dorkenwald, Sven, Pacheco, Diego A., Eckstein, Nils, Funke, Jan, Dickson, Barry J., Murthy, Mala
Published in Current biology (08.08.2022)
Published in Current biology (08.08.2022)
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The neural basis for a persistent internal state in Drosophila females
Deutsch, David, Pacheco, Diego, Encarnacion-Rivera, Lucas, Pereira, Talmo, Fathy, Ramie, Clemens, Jan, Girardin, Cyrille, Calhoun, Adam, Ireland, Elise, Burke, Austin, Dorkenwald, Sven, McKellar, Claire, Macrina, Thomas, Lu, Ran, Lee, Kisuk, Kemnitz, Nico, Ih, Dodam, Castro, Manuel, Halageri, Akhilesh, Jordan, Chris, Silversmith, William, Wu, Jingpeng, Seung, H Sebastian, Murthy, Mala
Published in eLife (23.11.2020)
Published in eLife (23.11.2020)
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Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex
Schneider-Mizell, Casey M, Bodor, Agnes L, Brittain, Derrick, Buchanan, JoAnn, Bumbarger, Daniel J, Elabbady, Leila, Gamlin, Clare, Kapner, Daniel, Kinn, Sam, Mahalingam, Gayathri, Seshamani, Sharmishtaa, Suckow, Shelby, Takeno, Marc, Torres, Russel, Yin, Wenjing, Dorkenwald, Sven, Bae, J Alexander, Castro, Manuel A, Halageri, Akhilesh, Jia, Zhen, Jordan, Chris, Kemnitz, Nico, Lee, Kisuk, Li, Kai, Lu, Ran, Macrina, Thomas, Mitchell, Eric, Mondal, Shanka Subhra, Mu, Shang, Nehoran, Barak, Popovych, Sergiy, Silversmith, William, Turner, Nicholas L, Wong, William, Wu, Jingpeng, Reimer, Jacob, Tolias, Andreas S, Seung, H Sebastian, Reid, R Clay, Collman, Forrest, Maçarico da Costa, Nuno
Published in bioRxiv (06.01.2024)
Published in bioRxiv (06.01.2024)
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Neurotransmitter classification from electron microscopy images at synaptic sites in Drosophila melanogaster
Eckstein, Nils, Bates, Alexander Shakeel, Champion, Andrew, Du, Michelle, Yin, Yijie, Schlegel, Philipp, Lu, Alicia Kun-Yang, Rymer, Thomson, Finley-May, Samantha, Paterson, Tyler, Parekh, Ruchi, Dorkenwald, Sven, Matsliah, Arie, Yu, Szi-Chieh, McKellar, Claire, Sterling, Amy, Eichler, Katharina, Costa, Marta, Seung, Sebastian, Murthy, Mala, Hartenstein, Volker, Jefferis, Gregory S.X.E., Funke, Jan
Published in Cell (09.05.2024)
Published in Cell (09.05.2024)
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Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity
Turner, Nicholas L., Macrina, Thomas, Bae, J. Alexander, Yang, Runzhe, Wilson, Alyssa M., Schneider-Mizell, Casey, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Bodor, Agnes L., Bleckert, Adam A., Brittain, Derrick, Froudarakis, Emmanouil, Dorkenwald, Sven, Collman, Forrest, Kemnitz, Nico, Ih, Dodam, Silversmith, William M., Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Yu, Szi-chieh, Popovych, Sergiy, Mu, Shang, Wong, William, Jordan, Chris S., Castro, Manuel, Buchanan, JoAnn, Bumbarger, Daniel J., Takeno, Marc, Torres, Russel, Mahalingam, Gayathri, Elabbady, Leila, Li, Yang, Cobos, Erick, Zhou, Pengcheng, Suckow, Shelby, Becker, Lynne, Paninski, Liam, Polleux, Franck, Reimer, Jacob, Tolias, Andreas S., Reid, R. Clay, da Costa, Nuno Maçarico, Seung, H. Sebastian
Published in Cell (17.03.2022)
Published in Cell (17.03.2022)
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Oligodendrocyte precursor cells ingest axons in the mouse neocortex
Buchanan, JoAnn, Elabbady, Leila, Collman, Forrest, Jorstad, Nikolas L, Bakken, Trygve E, Ott, Carolyn, Glatzer, Jenna, Bleckert, Adam A, Bodor, Agnes L, Brittain, Derrick, Bumbarger, Daniel J, Mahalingam, Gayathri, Seshamani, Sharmishtaa, Schneider-Mizell, Casey, Takeno, Marc M, Torres, Russel, Yin, Wenjing, Hodge, Rebecca D, Castro, Manuel, Dorkenwald, Sven, Ih, Dodam, Jordan, Chris S, Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Macrina, Thomas, Mu, Shang, Popovych, Sergiy, Silversmith, William M, Tartavull, Ignacio, Turner, Nicholas L, Wilson, Alyssa M, Wong, William, Wu, Jingpeng, Zlateski, Aleksandar, Zung, Jonathan, Lippincott-Schwartz, Jennifer, Lein, Ed S, Seung, H Sebastian, Bergles, Dwight E, Reid, R Clay, da Costa, Nuno Maçarico
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (29.11.2022)
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A petavoxel fragment of human cerebral cortex reconstructed at nanoscale resolution
Shapson-Coe, Alexander, Januszewski, Michał, Berger, Daniel R, Pope, Art, Wu, Yuelong, Blakely, Tim, Schalek, Richard L, Li, Peter H, Wang, Shuohong, Maitin-Shepard, Jeremy, Karlupia, Neha, Dorkenwald, Sven, Sjostedt, Evelina, Leavitt, Laramie, Lee, Dongil, Troidl, Jakob, Collman, Forrest, Bailey, Luke, Fitzmaurice, Angerica, Kar, Rohin, Field, Benjamin, Wu, Hank, Wagner-Carena, Julian, Aley, David, Lau, Joanna, Lin, Zudi, Wei, Donglai, Pfister, Hanspeter, Peleg, Adi, Jain, Viren, Lichtman, Jeff W
Published in Science (American Association for the Advancement of Science) (10.05.2024)
Published in Science (American Association for the Advancement of Science) (10.05.2024)
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SyConn2: dense synaptic connectivity inference for volume electron microscopy
Schubert, Philipp J., Dorkenwald, Sven, Januszewski, Michał, Klimesch, Jonathan, Svara, Fabian, Mancu, Andrei, Ahmad, Hashir, Fee, Michale S., Jain, Viren, Kornfeld, Joergen
Published in Nature methods (01.11.2022)
Published in Nature methods (01.11.2022)
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Binary and analog variation of synapses between cortical pyramidal neurons
Dorkenwald, Sven, Turner, Nicholas L, Macrina, Thomas, Lee, Kisuk, Lu, Ran, Wu, Jingpeng, Bodor, Agnes L, Bleckert, Adam A, Brittain, Derrick, Kemnitz, Nico, Silversmith, William M, Ih, Dodam, Zung, Jonathan, Zlateski, Aleksandar, Tartavull, Ignacio, Yu, Szi-Chieh, Popovych, Sergiy, Wong, William, Castro, Manuel, Jordan, Chris, Wilson, Alyssa M, Froudarakis, Emmanouil, Buchanan, Joann, Takeno, Marc, Torres, Russel, Mahalingam, Gayathri, Collman, rest, Schneider-Mizell, Casey, Bumbarger, Daniel J, Yang, Li, Becker, Lynne, Suckow, Shelby, Reimer, Jacob, Tolias, Andreas S, Nuno Macarico Da Costa, Reid, R Clay, Seung, H Sebastian
Published in bioRxiv (03.12.2021)
Published in bioRxiv (03.12.2021)
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A connectomic study of a petascale fragment of human cerebral cortex
Shapson-Coe, Alexander, Januszewski, Michal, Berger, Daniel R, Pope, Art, Wu, Yuelong, Blakely, Tim, Schalek, Richard L, Li, Peter H, Wang, Shuohong, Maitlin-Shepard, Jeremy, Karlupia, Neha, Dorkenwald, Sven, Sjostedt, Evelina, Leavitt, Laramie, Lee, Dongil, Bailey, Luke, Fitzmaurice, Angerica, Kar, Rohin, Field, Benjamin, Wu, Hank, Wagner-Carena, Julian, Aley, David, Lau, Joanna, Lin, Zudi, Donglai Wei, Pfister, Hanspeter, Peleg, Adi, Jain, Viren, Lichtman, Jeff W
Published in bioRxiv (25.11.2021)
Published in bioRxiv (25.11.2021)
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Multi-layered maps of neuropil with segmentation-guided contrastive learning
Dorkenwald, Sven, Li, Peter H., Januszewski, Michał, Berger, Daniel R., Maitin-Shepard, Jeremy, Bodor, Agnes L., Collman, Forrest, Schneider-Mizell, Casey M., da Costa, Nuno Maçarico, Lichtman, Jeff W., Jain, Viren
Published in Nature methods (01.12.2023)
Published in Nature methods (01.12.2023)
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The fly connectome reveals a path to the effectome
Pospisil, Dean A., Aragon, Max J., Dorkenwald, Sven, Matsliah, Arie, Sterling, Amy R., Schlegel, Philipp, Yu, Szi-chieh, McKellar, Claire E., Costa, Marta, Eichler, Katharina, Jefferis, Gregory S. X. E., Murthy, Mala, Pillow, Jonathan W.
Published in Nature (London) (03.10.2024)
Published in Nature (London) (03.10.2024)
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Network statistics of the whole-brain connectome of Drosophila
Lin, Albert, Yang, Runzhe, Dorkenwald, Sven, Matsliah, Arie, Sterling, Amy R., Schlegel, Philipp, Yu, Szi-chieh, McKellar, Claire E., Costa, Marta, Eichler, Katharina, Bates, Alexander Shakeel, Eckstein, Nils, Funke, Jan, Jefferis, Gregory S. X. E., Murthy, Mala
Published in Nature (London) (03.10.2024)
Published in Nature (London) (03.10.2024)
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Functional connectomics spanning multiple areas of mouse visual cortex
Consortium, Microns, Bodor, Agnes L, Halageri, Akhilesh, Sterling, Amy, Tolias, Andreas S, Ramos, Anthony, Barak Nehoran, Silverman, Ben, Celii, Brendan, Smith, Cameron L, Schneider-Mizell, Casey M, Jordan, Chris, Xu, Chris, Papadopoulos, Christos, Gamlin, Clare, Kapner, Dan, Bumbarger, Daniel J, Brittain, Derrick, Yatsenko, Dimitri, Walker, Edgar Y, Miranda, Elanine, Froudarakis, Emmanouil, Mitchell, Eric, Cobos, Eric, Sinz, Fabian H, Ye, Fei, Collman, rest, Mahalingam, Gayathri, Williams, Grace, Seung, H Sebastian, Bae, J Alexander, Reimer, Jacob, Hebditch, James, Gager, Jay, Wu, Jingpeng, Buchanan, Joann, Kuehner, Kai, Li, Kai, Lee, Kisuk, Kyle, Willie, Elabbady, Leila, Mahaly Baptiste, Castro, Manuel A, Takeno, Marc, Moore, Merlin, Turner, Nicholas L, Kemnitz, Nico, Nuno Macarico Da Costa, Ogedengbe, Oluwaseun, Fahey, Paul G, Reid, R Clay, Lu, Ran, Yang, Runzhe, Torres, Russel, Ryan, Willie, Kinn, Sam, Williams, Sarah, Mcreynolds, Sarah, Patel, Saumil, Selden Koolman, Popovych, Sergiy, Shang Mu, Mondal, Shanka Subhra, Suckow, Shelby, Papadopoulos, Stelios, Dorkenwald, Sven, Yu, Szi-Chieh, Taliah Muhammad, Macrina, Thomas, Wang, Tianyu, Fliss, Tim, Yin, Wenjing, Silversmith, William, Wong, William, Pitkow, Xaq, Jia, Zhen, Tan, Zheng H
Published in bioRxiv (29.07.2021)
Published in bioRxiv (29.07.2021)
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