Differential expression in RNA-seq: a matter of depth
Tarazona, Sonia, García-Alcalde, Fernando, Dopazo, Joaquín, Ferrer, Alberto, Conesa, Ana
Published in Genome research (01.12.2011)
Published in Genome research (01.12.2011)
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Journal Article
Genomics of the origin and evolution of Citrus
Wu, Guohong Albert, Terol, Javier, Ibanez, Victoria, López-García, Antonio, Pérez-Román, Estela, Borredá, Carles, Domingo, Concha, Tadeo, Francisco R., Carbonell-Caballero, Jose, Alonso, Roberto, Curk, Franck, Du, Dongliang, Ollitrault, Patrick, Roose, Mikeal L., Dopazo, Joaquin, Gmitter, Frederick G., Rokhsar, Daniel S., Talon, Manuel
Published in Nature (London) (15.02.2018)
Published in Nature (London) (15.02.2018)
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Journal Article
Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data
García-Alcalde, Fernando, García-López, Federico, Dopazo, Joaquín, Conesa, Ana
Published in Bioinformatics (01.01.2011)
Published in Bioinformatics (01.01.2011)
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Journal Article
A Pan-Cancer Catalogue of Cancer Driver Protein Interaction Interfaces
Porta-Pardo, Eduard, Garcia-Alonso, Luz, Hrabe, Thomas, Dopazo, Joaquin, Godzik, Adam
Published in PLoS computational biology (01.10.2015)
Published in PLoS computational biology (01.10.2015)
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Journal Article
Real world evidence of calcifediol or vitamin D prescription and mortality rate of COVID-19 in a retrospective cohort of hospitalized Andalusian patients
Loucera, Carlos, Peña-Chilet, María, Esteban-Medina, Marina, Muñoyerro-Muñiz, Dolores, Villegas, Román, Lopez-Miranda, Jose, Rodriguez-Baño, Jesus, Túnez, Isaac, Bouillon, Roger, Dopazo, Joaquin, Quesada Gomez, Jose Manuel
Published in Scientific reports (03.12.2021)
Published in Scientific reports (03.12.2021)
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Journal Article
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
Al-Shahrour, Fátima, Díaz-Uriarte, Ramón, Dopazo, Joaquín
Published in Bioinformatics (01.03.2004)
Published in Bioinformatics (01.03.2004)
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Journal Article
Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling
López-Sánchez, Macarena, Loucera, Carlos, Peña-Chilet, María, Dopazo, Joaquín
Published in Human molecular genetics (22.06.2022)
Published in Human molecular genetics (22.06.2022)
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Journal Article
The effects of death and post-mortem cold ischemia on human tissue transcriptomes
Ferreira, Pedro G., Muñoz-Aguirre, Manuel, Reverter, Ferran, Sá Godinho, Caio P., Sousa, Abel, Amadoz, Alicia, Sodaei, Reza, Hidalgo, Marta R., Pervouchine, Dmitri, Carbonell-Caballero, Jose, Nurtdinov, Ramil, Breschi, Alessandra, Amador, Raziel, Oliveira, Patrícia, Çubuk, Cankut, Curado, João, Aguet, François, Oliveira, Carla, Dopazo, Joaquin, Sammeth, Michael, Ardlie, Kristin G., Guigó, Roderic
Published in Nature communications (13.02.2018)
Published in Nature communications (13.02.2018)
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Journal Article
Publication
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
Ostaszewski, Marek, Mazein, Alexander, Gillespie, Marc E., Kuperstein, Inna, Niarakis, Anna, Hermjakob, Henning, Pico, Alexander R., Willighagen, Egon L., Evelo, Chris T., Hasenauer, Jan, Schreiber, Falk, Dräger, Andreas, Demir, Emek, Wolkenhauer, Olaf, Furlong, Laura I., Barillot, Emmanuel, Dopazo, Joaquin, Orta-Resendiz, Aurelio, Messina, Francesco, Valencia, Alfonso, Funahashi, Akira, Kitano, Hiroaki, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Published in Scientific data (05.05.2020)
Published in Scientific data (05.05.2020)
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Journal Article
High-throughput functional annotation and data mining with the Blast2GO suite
Götz, Stefan, García-Gómez, Juan Miguel, Terol, Javier, Williams, Tim D, Nagaraj, Shivashankar H, Nueda, María José, Robles, Montserrat, Talón, Manuel, Dopazo, Joaquín, Conesa, Ana
Published in Nucleic acids research (01.06.2008)
Published in Nucleic acids research (01.06.2008)
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Journal Article
Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity
Petkevicius, Kasparas, Virtue, Sam, Bidault, Guillaume, Jenkins, Benjamin, Çubuk, Cankut, Morgantini, Cecilia, Aouadi, Myriam, Dopazo, Joaquin, Serlie, Mireille J, Koulman, Albert, Vidal-Puig, Antonio
Published in eLife (16.08.2019)
Published in eLife (16.08.2019)
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Journal Article
Evaluation of a combined detection of SARS-CoV-2 and its variants using real-time allele-specific PCR strategy: an advantage for clinical practice
Chaves-Blanco, Lucía, de Salazar, Adolfo, Fuentes, Ana, Viñuela, Laura, Perez-Florido, Javier, Dopazo, Joaquín, García, Federico
Published in Epidemiology and infection (24.11.2023)
Published in Epidemiology and infection (24.11.2023)
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Journal Article
Precision medicine needs pioneering clinical bioinformaticians
Gómez-López, Gonzalo, Dopazo, Joaquín, Cigudosa, Juan C, Valencia, Alfonso, Al-Shahrour, Fátima
Published in Briefings in bioinformatics (21.05.2019)
Published in Briefings in bioinformatics (21.05.2019)
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Journal Article
A comparison of mechanistic signaling pathway activity analysis methods
Amadoz, Alicia, Hidalgo, Marta R, Çubuk, Cankut, Carbonell-Caballero, José, Dopazo, Joaquín
Published in Briefings in bioinformatics (27.09.2019)
Published in Briefings in bioinformatics (27.09.2019)
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Journal Article
A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies
Alemán, Alejandro, Garcia-Garcia, Francisco, Salavert, Francisco, Medina, Ignacio, Dopazo, Joaquín
Published in Nucleic acids research (01.07.2014)
Published in Nucleic acids research (01.07.2014)
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Journal Article