Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya
Githinji, George, de Laurent, Zaydah R., Mohammed, Khadija Said, Omuoyo, Donwilliams O., Macharia, Peter M., Morobe, John M., Otieno, Edward, Kinyanjui, Samson M., Agweyu, Ambrose, Maitha, Eric, Kitole, Ben, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John, Otieno, John, Salim, Barke, Kasera, Kadondi, Kiiru, John, Aman, Rashid, Barasa, Edwine, Warimwe, George, Bejon, Philip, Tsofa, Benjamin, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N.
Published in Nature communications (10.08.2021)
Published in Nature communications (10.08.2021)
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Journal Article
Incidence of chikungunya virus infections among Kenyan children with neurological disease, 2014-2018: A cohort study
Nyamwaya, Doris K, Otiende, Mark, Mwango, Lilian, Kariuki, Symon M, Otieno, Berrick, Omuoyo, Donwilliams O, Githinji, George, Kitsao, Barnes S, Karanja, Henry K, Gitonga, John N, de Laurent, Zaydah R, Davies, Alun, Mwarumba, Salim, Agoti, Charles N, Thumbi, Samuel M, Hamaluba, Mainga M, Newton, Charles R, Bejon, Philip, Warimwe, George M
Published in PLoS medicine (12.05.2022)
Published in PLoS medicine (12.05.2022)
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Journal Article
Endemic chikungunya fever in Kenyan children: a prospective cohort study
Nyamwaya, Doris K, Otiende, Mark, Omuoyo, Donwilliams O, Githinji, George, Karanja, Henry K, Gitonga, John N, R de Laurent, Zaydah, Otieno, James R, Sang, Rosemary, Kamau, Everlyn, Cheruiyot, Stanley, Otieno, Edward, Agoti, Charles N, Bejon, Philip, Thumbi, Samuel M, Warimwe, George M
Published in BMC infectious diseases (18.02.2021)
Published in BMC infectious diseases (18.02.2021)
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Journal Article
Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro
Nyagwange, James, Kutima, Bernadette, Mwai, Kennedy, Karanja, Henry K., Gitonga, John N., Mugo, Daisy, Sein, Yiakon, Wright, Daniel, Omuoyo, Donwilliams O., Nyiro, Joyce U., Tuju, James, Nokes, D. James, Agweyu, Ambrose, Bejon, Philip, Ochola-Oyier, Lynette I., Scott, J. Anthony G., Lambe, Teresa, Nduati, Eunice, Agoti, Charles, Warimwe, George M.
Published in International journal of infectious diseases (01.02.2023)
Published in International journal of infectious diseases (01.02.2023)
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Journal Article
Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study
Agoti, Charles N, Ochola-Oyier, Lynette Isabella, Dellicour, Simon, Mohammed, Khadija Said, Lambisia, Arnold W, de Laurent, Zaydah R, Morobe, John M, Mburu, Maureen W, Omuoyo, Donwilliams O, Ongera, Edidah M, Ndwiga, Leonard, Maitha, Eric, Kitole, Benson, Suleiman, Thani, Mwakinangu, Mohamed, Nyambu, John K, Otieno, John, Salim, Barke, Musyoki, Jennifer, Murunga, Nickson, Otieno, Edward, Kiiru, John N, Kasera, Kadondi, Amoth, Patrick, Mwangangi, Mercy, Aman, Rashid, Kinyanjui, Samson, Warimwe, George, Phan, My, Agweyu, Ambrose, Cotten, Matthew, Barasa, Edwine, Tsofa, Benjamin, Nokes, D James, Bejon, Philip, Githinji, George
Published in eLife (14.06.2022)
Published in eLife (14.06.2022)
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Journal Article
Pooled testing conserves SARS-CoV-2 laboratory resources and improves test turn-around time: experience on the Kenyan Coast
Agoti, Charles N, Mutunga, Martin, Lambisia, Arnold W, Kimani, Domtila, Cheruiyot, Robinson, Kiyuka, Patience, Lewa, Clement, Gicheru, Elijah, Tendwa, Metrine, Said Mohammed, Khadija, Osoti, Victor, Makale, Johnstone, Tawa, Brian, Odundo, Calleb, Cheruiyot, Wesley, Nyamu, Wilfred, Gumbi, Wilson, Mwacharo, Jedidah, Nyamako, Lydia, Otieno, Edward, Amadi, David, Thoya, Janet, Karani, Angela, Mugo, Daisy, Musyoki, Jennifer, Gumba, Horace, Mwarumba, Salim, M Gichuki, Bonface, Njuguna, Susan, Riako, Debra, Mutua, Shadrack, Gitonga, John N, Sein, Yiakon, Bartilol, Brian, Mwangi, Shaban J, O Omuoyo, Donwilliams, M Morobe, John, de Laurent, Zaydah R, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Tsofa, Benjamin
Published in Wellcome open research (2020)
Published in Wellcome open research (2020)
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Journal Article
Pooled testing conserves SARS-CoV-2 laboratory resources and improves test turn-around time: experience on the Kenyan Coast
Agoti, Charles N, Mutunga, Martin, Lambisia, Arnold W, Kimani, Domtila, Cheruiyot, Robinson, Kiyuka, Patience, Lewa, Clement, Gicheru, Elijah, Tendwa, Metrine, Said Mohammed, Khadija, Osoti, Victor, Makale, Johnstone, Tawa, Brian, Odundo, Calleb, Cheruiyot, Wesley, Nyamu, Wilfred, Gumbi, Wilson, Mwacharo, Jedidah, Nyamako, Lydia, Otieno, Edward, Amadi, David, Thoya, Janet, Karani, Angela, Mugo, Daisy, Musyoki, Jennifer, Gumba, Horace, Mwarumba, Salim, M Gichuki, Bonface, Njuguna, Susan, Riako, Debra, Mutua, Shadrack, Gitonga, John N, Sein, Yiakon, Bartilol, Brian, Mwangi, Shaban J, O Omuoyo, Donwilliams, M Morobe, John, de Laurent, Zaydah R, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Tsofa, Benjamin
Published in Wellcome open research (01.01.2020)
Published in Wellcome open research (01.01.2020)
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Journal Article
Congenital microcephaly unrelated to flavivirus exposure in coastal Kenya
Barsosio, Hellen C, Gitonga, John N, Karanja, Henry K, Nyamwaya, Doris K, Omuoyo, Donwilliams O, Kamau, Everlyn, Hamaluba, Mainga M, Nyiro, Joyce U, Kitsao, Barnes S, Nyaguara, Amek, Mwakio, Stella, Newton, Charles R, Sang, Rosemary, Wright, Daniel, Sanders, Eduard J, Seale, Anna C, Agoti, Charles N, Berkley, James A, Bejon, Philip, Warimwe, George M
Published in Wellcome open research (2019)
Published in Wellcome open research (2019)
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Journal Article
An optimization of four SARS-CoV-2 qRT-PCR assays in a Kenyan laboratory to support the national COVID-19 rapid response teams
Mohammed, Khadija Said, de Laurent, Zaydah R., Omuoyo, Donwilliams O., Lewa, Clement, Gicheru, Elijah, Cheruiyot, Robinson, Bartilol, Brian, Mutua, Shadrack, Musyoki, Jennifer, Gumba, Horace, Mwacharo, Jedidah, Riako, Debra, Mwangi, Shaban J., Gichuki, Bonface M., Nyamako, Lydia, Karani, Angela, Karanja, Henry, Mugo, Daisy, Gitonga, John N., Njuguna, Susan, Gumbi, Wilson, Tawa, Brian, Tendwa, Metrine, Cheruiyot, Wesley, Sein, Yiakon, Nyambu, John K., Patta, Shem O., Thani, Thani Suleiman, Maitha, Eric K., Kitole, Benson, Mwakinangu, Mohamed S., Muslih, Barke S., Otieno, John Ochieng, Nyiro, Joyce U., Kiyuka, Patience, Ndwiga, Leonard, Wamae, Kevin, Kimani, Domtila, Makale, Johnstone, Morobe, John Mwita, Osoti, Victor, Lambisia, Arnold W., Odundo, Calleb, Mwarumba, Salim, Mutunga, Martin, Bejon, Philip, Tsofa, Benjamin, Agoti, Charles N., Ochola-Oyier, Lynette Isabella
Published in Wellcome open research (01.01.2020)
Published in Wellcome open research (01.01.2020)
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Journal Article
An optimization of four SARS-CoV-2 qRT-PCR assays in a Kenyan laboratory to support the national COVID-19 rapid response teams
Mohammed, Khadija Said, de Laurent, Zaydah R, Omuoyo, Donwilliams O, Lewa, Clement, Gicheru, Elijah, Cheruiyot, Robinson, Bartilol, Brian, Mutua, Shadrack, Musyoki, Jennifer, Gumba, Horace, Mwacharo, Jedidah, Riako, Debra, Mwangi, Shaban J, Gichuki, Bonface M, Nyamako, Lydia, Karani, Angela, Karanja, Henry, Mugo, Daisy, Gitonga, John N, Njuguna, Susan, Gumbi, Wilson, Tawa, Brian, Tendwa, Metrine, Cheruiyot, Wesley, Sein, Yiakon, Nyambu, John K, Patta, Shem O, Thani, Thani Suleiman, Maitha, Eric K, Kitole, Benson, Mwakinangu, Mohamed S, Muslih, Barke S, Otieno, John Ochieng, Nyiro, Joyce U, Kiyuka, Patience, Ndwiga, Leonard, Wamae, Kevin, Kimani, Domtila, Makale, Johnstone, Morobe, John Mwita, Osoti, Victor, Lambisia, Arnold W, Odundo, Calleb, Mwarumba, Salim, Mutunga, Martin, Bejon, Philip, Tsofa, Benjamin, Agoti, Charles N, Ochola-Oyier, Lynette Isabella
Published in Wellcome open research (2020)
Published in Wellcome open research (2020)
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Journal Article
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
Wilkinson, Eduan, Giovanetti, Marta, Tegally, Houriiyah, San, James E, Lessells, Richard, Cuadros, Diego, Martin, Darren P, Rasmussen, David A, Zekri, Abdel-Rahman N, Sangare, Abdoul K, Ouedraogo, Abdoul-Salam, Sesay, Abdul K, Priscilla, Abechi, Kemi, Adedotun-Sulaiman, Olubusuyi, Adewunmi M, Oluwapelumi, Adeyemi O O, Hammami, Adnène, Amuri, Adrienne A, Sayed, Ahmad, Ouma, Ahmed E O, Elargoubi, Aida, Ajayi, Nnennaya A, Victoria, Ajogbasile F, Kazeem, Akano, George, Akpede, Trotter, Alexander J, Yahaya, Ali A, Keita, Alpha K, Diallo, Amadou, Kone, Amadou, Souissi, Amal, Chtourou, Amel, Gutierrez, Ana V, Page, Andrew J, Vinze, Anika, Iranzadeh, Arash, Lambisia, Arnold, Ismail, Arshad, Rosemary, Audu, Sylverken, Augustina, Femi, Ayoade, Ibrahimi, Azeddine, Marycelin, Baba, Oderinde, Bamidele S, Bolajoko, Bankole, Dhaala, Beatrice, Herring, Belinda L, Njanpop-Lafourcade, Berthe-Marie, Kleinhans, Bronwyn, McInnis, Bronwyn, Tegomoh, Bryan, Brook, Cara, Pratt, Catherine B, Scheepers, Cathrine, Akoua-Koffi, Chantal G, Agoti, Charles N, Peyrefitte, Christophe, Daubenberger, Claudia, Morang'a, Collins M, Nokes, D James, Amoako, Daniel G, Bugembe, Daniel L, Park, Danny, Baker, David, Doolabh, Deelan, Ssemwanga, Deogratius, Tshiabuila, Derek, Bassirou, Diarra, Amuzu, Dominic S Y, Goedhals, Dominique, Omuoyo, Donwilliams O, Maruapula, Dorcas, Foster-Nyarko, Ebenezer, Lusamaki, Eddy K, Simulundu, Edgar, Ong'era, Edidah M, Ngabana, Edith N, Shumba, Edwin, El Fahime, Elmostafa, Lokilo, Emmanuel, Mukantwari, Enatha, Philomena, Eromon, Belarbi, Essia, Simon-Loriere, Etienne, Anoh, Etilé A, Leendertz, Fabian, Ajili, Faida, Enoch, Fakayode O, Wasfi, Fares, Abdelmoula, Fatma, Mosha, Fausta S, Takawira, Faustinos T, Derrar, Fawzi, Bouzid, Feriel, Onikepe, Folarin, Adeola, Fowotade, Muyembe, Francisca M, Tanser, Frank, Dratibi, Fred A, Mbunsu, Gabriel K
Published in Science (American Association for the Advancement of Science) (22.10.2021)
Published in Science (American Association for the Advancement of Science) (22.10.2021)
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The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
Tegally, Houriiyah, San, James E, Cotten, Matthew, Moir, Monika, Tegomoh, Bryan, Mboowa, Gerald, Martin, Darren P, Baxter, Cheryl, Lambisia, Arnold W, Diallo, Amadou, Amoako, Daniel G, Diagne, Moussa M, Sisay, Abay, Zekri, Abdel-Rahman N, Gueye, Abdou Salam, Sangare, Abdoul K, Ouedraogo, Abdoul-Salam, Sow, Abdourahmane, Musa, Abdualmoniem O, Sesay, Abdul K, Abias, Abe G, Elzagheid, Adam I, Lagare, Adamou, Kemi, Adedotun-Sulaiman, Abar, Aden Elmi, Johnson, Adeniji A, Fowotade, Adeola, Oluwapelumi, Adeyemi O, Amuri, Adrienne A, Juru, Agnes, Kandeil, Ahmed, Mostafa, Ahmed, Rebai, Ahmed, Sayed, Ahmed, Kazeem, Akano, Balde, Aladje, Christoffels, Alan, Trotter, Alexander J, Campbell, Allan, Keita, Alpha K, Kone, Amadou, Bouzid, Amal, Souissi, Amal, Agweyu, Ambrose, Naguib, Amel, Gutierrez, Ana V, Nkeshimana, Anatole, Page, Andrew J, Yadouleton, Anges, Vinze, Anika, Happi, Anise N, Chouikha, Anissa, Iranzadeh, Arash, Maharaj, Arisha, Batchi-Bouyou, Armel L, Ismail, Arshad, Sylverken, Augustina A, Goba, Augustine, Femi, Ayoade, Sijuwola, Ayotunde E, Marycelin, Baba, Salako, Babatunde L, Oderinde, Bamidele S, Bolajoko, Bankole, Diarra, Bassirou, Herring, Belinda L, Tsofa, Benjamin, Lekana-Douki, Bernard, Mvula, Bernard, Njanpop-Lafourcade, Berthe-Marie, Marondera, Blessing T, Khaireh, Bouh Abdi, Kouriba, Bourema, Adu, Bright, Pool, Brigitte, McInnis, Bronwyn, Brook, Cara, Williamson, Carolyn, Nduwimana, Cassien, Anscombe, Catherine, Pratt, Catherine B, Scheepers, Cathrine, Akoua-Koffi, Chantal G, Agoti, Charles N, Mapanguy, Chastel M, Loucoubar, Cheikh, Onwuamah, Chika K, Ihekweazu, Chikwe, Malaka, Christian N, Peyrefitte, Christophe, Grace, Chukwa, Omoruyi, Chukwuma E, Rafaï, Clotaire D, Morang'a, Collins M, Erameh, Cyril, Lule, Daniel B, Bridges, Daniel J, Mukadi-Bamuleka, Daniel, Park, Danny, Rasmussen, David A
Published in Science (American Association for the Advancement of Science) (07.10.2022)
Published in Science (American Association for the Advancement of Science) (07.10.2022)
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Journal Article
Serum IgG and mucosal IgA antibodies from pre-pandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro
Nyagwange, James, Kutima, Bernadette, Mwai, Kennedy, Karanja, Henry K., Gitonga, John N., Mugo, Daisy, Sein, Yiakon, Wright, Daniel, Omuoyo, Donwilliams O., Nyiro, Joyce U., Tuju, James, Nokes, D. James, Agweyu, Ambrose, Bejon, Philip, Ochola-Oyier, Lynette I., Scott, J. Anthony G., Lambe, Teresa, Nduati, Eunice, Agoti, Charles, Warimwe, George M.
Published in International journal of infectious diseases (05.12.2022)
Published in International journal of infectious diseases (05.12.2022)
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Journal Article
Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito RNA metaviromes reveal presence of diverse insect specific viruses
Omuoyo, Donwilliams O., Nyamwaya, Doris K., Kamau, Everlyn, Nyagwange, James N., Karanja, Henry K., Gitonga, John N., de Laurent, Zaydah, Ngala, Jonathan C., Kinyua, Johnson, Rono, Martin K., Mwangangi, Joseph M., Agoti, Charles N., Warimwe, George M.
Published in Wellcome open research (2023)
Published in Wellcome open research (2023)
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Journal Article
Metagenomic analysis of coastal Kenya female Aedes aegypti mosquito RNA metaviromes reveal presence of diverse insect specific viruses
Omuoyo, Donwilliams O., Nyamwaya, Doris K., Kamau, Everlyn, Nyagwange, James N., Karanja, Henry K., Gitonga, John N., de Laurent, Zaydah, Ngala, Jonathan C., Kinyua, Johnson, Rono, Martin K., Mwangangi, Joseph M., Agoti, Charles N., Warimwe, George M.
Published in Wellcome open research (2023)
Published in Wellcome open research (2023)
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Journal Article
Maintaining laboratory quality assurance and safety in a pandemic: Experiences from the KEMRI-Wellcome Trust Research Programme laboratory’s COVID-19 response [version 2; peer review: 2 approved]
Shadrack Mutua, Brian Bartilol, Debra Riako, Lydia Nyamako, Angela Karani, Daisy Mugo, Brian Tawa, Michael Opiyo, Wesley Cheruiyot, Metrine Tendwa, Oscar Kai, Caroline Ngetsa, Yiakon Sein, Nelson Ouma, Arnold W. Lambisia, Bonface M. Gichuki, Boniface Karia, John M. Morobe, Shaban Mwangi, Benjamin Tsofa, Philip Bejon, Alfred Mwakubia, Fredrick Mitsanze, Kelly Ominde, Patience Kiyuka, Martin Rono, Johnstone Makale, Agnes Mutiso, Perpetual Wanjiku, Victor Osoti, John N. Gitonga, Alfred Mwanzu, Calleb Odundo, Martin Mutunga, Salim Mwarumba, Donwilliams O. Omuoyo, Amek Nyaguara, Clement Lewa, Elijah Gicheru, Wilson Gumbi, Jennifer Musyoki, Susan Njuguna, Moses Mosobo, Lynette Isabella Ochola-Oyier, Horace Gumba, Wilfred Nyamu, Khadija Said Mohammed, Janet Thoya, Edward Otieno, Domtila Kimani, Jedidah Mwacharo, David Amadi, Charles N. Agoti, Zaydah R. de Laurent, Robinson Cheruiyot
Published in Wellcome open research (01.03.2022)
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Published in Wellcome open research (01.03.2022)
Journal Article
Maintaining laboratory quality assurance and safety in a pandemic: Experiences from the KEMRI-Wellcome Trust Research Programme laboratory’s COVID-19 response
Gumba, Horace, Opiyo, Michael, Musyoki, Jennifer, Mutunga, Martin, Ngetsa, Caroline, Mwarumba, Salim, Mosobo, Moses, Njuguna, Susan, Kai, Oscar, Lambisia, Arnold W., Kimani, Domtila, Cheruiyot, Robinson, Kiyuka, Patience, Lewa, Clement, Gicheru, Elijah, Tendwa, Metrine, Said Mohammed, Khadija, Osoti, Victor, Makale, Johnstone, Tawa, Brian, Odundo, Calleb, Cheruiyot, Wesley, Nyamu, Wilfred, Gumbi, Wilson, Mwacharo, Jedidah, Nyamako, Lydia, Otieno, Edward, Amadi, David, Ouma, Nelson, Karia, Boniface, Thoya, Janet, Karani, Angela, Mugo, Daisy, Gichuki, Bonface M., Riako, Debra, Mutua, Shadrack, Gitonga, John N., Ominde, Kelly, Wanjiku, Perpetual, Mutiso, Agnes, Mwanzu, Alfred, Sein, Yiakon, Bartilol, Brian, Mwangi, Shaban, Omuoyo, Donwilliams O., Morobe, John M., de Laurent, Zaydah R., Mitsanze, Fredrick, Mwakubia, Alfred, Rono, Martin, Nyaguara, Amek, Tsofa, Benjamin, Bejon, Philip, Agoti, Charles N., Ochola-Oyier, Lynette Isabella
Published in Wellcome open research (2021)
Published in Wellcome open research (2021)
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Journal Article
Maintaining laboratory quality assurance and safety in a pandemic: Experiences from the KEMRI-Wellcome Trust Research Programme laboratory’s COVID-19 response
Gumba, Horace, Opiyo, Michael, Musyoki, Jennifer, Mutunga, Martin, Ngetsa, Caroline, Mwarumba, Salim, Mosobo, Moses, Njuguna, Susan, Kai, Oscar, Lambisia, Arnold W., Kimani, Domtila, Cheruiyot, Robinson, Kiyuka, Patience, Lewa, Clement, Gicheru, Elijah, Tendwa, Metrine, Said Mohammed, Khadija, Osoti, Victor, Makale, Johnstone, Tawa, Brian, Odundo, Calleb, Cheruiyot, Wesley, Nyamu, Wilfred, Gumbi, Wilson, Mwacharo, Jedidah, Nyamako, Lydia, Otieno, Edward, Amadi, David, Ouma, Nelson, Karia, Boniface, Thoya, Janet, Karani, Angela, Mugo, Daisy, Gichuki, Bonface M., Riako, Debra, Mutua, Shadrack, Gitonga, John N., Ominde, Kelly, Wanjiku, Perpetual, Mutiso, Agnes, Mwanzu, Alfred, Sein, Yiakon, Bartilol, Brian, Mwangi, Shaban, Omuoyo, Donwilliams O., Morobe, John M., de Laurent, Zaydah R., Mitsanze, Fredrick, Mwakubia, Alfred, Rono, Martin, Nyaguara, Amek, Tsofa, Benjamin, Bejon, Philip, Agoti, Charles N., Ochola-Oyier, Lynette Isabella
Published in Wellcome open research (2021)
Published in Wellcome open research (2021)
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