Nanoparticle enrichment mass-spectrometry proteomics identifies protein-altering variants for precise pQTL mapping
Suhre, Karsten, Venkataraman, Guhan Ram, Guturu, Harendra, Halama, Anna, Stephan, Nisha, Thareja, Gaurav, Sarwath, Hina, Motamedchaboki, Khatereh, Donovan, Margaret K. R., Siddiqui, Asim, Batzoglou, Serafim, Schmidt, Frank
Published in Nature communications (02.02.2024)
Published in Nature communications (02.02.2024)
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In heart failure reactivation of RNA-binding proteins is associated with the expression of 1,523 fetal-specific isoforms
D'Antonio, Matteo, Nguyen, Jennifer P, Arthur, Timothy D, Matsui, Hiroko, Donovan, Margaret K R, D'Antonio-Chronowska, Agnieszka, Frazer, Kelly A
Published in PLoS computational biology (01.02.2022)
Published in PLoS computational biology (01.02.2022)
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Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls
Donovan, Margaret K R, Huang, Yingxiang, Blume, John E, Wang, Jian, Hornburg, Daniel, Ferdosi, Shadi, Mohtashemi, Iman, Kim, Sangtae, Ko, Marwin, Benz, Ryan W, Platt, Theodore L, Batzoglou, Serafim, Diaz, Luis A, Farokhzad, Omid C, Siddiqui, Asim
Published in PloS one (29.03.2023)
Published in PloS one (29.03.2023)
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eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk
Nguyen, Jennifer P., Arthur, Timothy D., Fujita, Kyohei, Salgado, Bianca M., Donovan, Margaret K. R., Matsui, Hiroko, Kim, Ji Hyun, D’Antonio-Chronowska, Agnieszka, D’Antonio, Matteo, Frazer, Kelly A.
Published in Nature communications (30.10.2023)
Published in Nature communications (30.10.2023)
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Journal Article
Properties of structural variants and short tandem repeats associated with gene expression and complex traits
Jakubosky, David, D’Antonio, Matteo, Bonder, Marc Jan, Smail, Craig, Donovan, Margaret K. R., Young Greenwald, William W., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Stegle, Oliver, Smith, Erin N., Montgomery, Stephen B., DeBoever, Christopher, Frazer, Kelly A.
Published in Nature communications (10.06.2020)
Published in Nature communications (10.06.2020)
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Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits
Benaglio, Paola, D’Antonio-Chronowska, Agnieszka, Ma, Wubin, Yang, Feng, Young Greenwald, William W., Donovan, Margaret K. R., DeBoever, Christopher, Li, He, Drees, Frauke, Singhal, Sanghamitra, Matsui, Hiroko, van Setten, Jessica, Sotoodehnia, Nona, Gaulton, Kyle J., Smith, Erin N., D’Antonio, Matteo, Rosenfeld, Michael G., Frazer, Kelly A.
Published in Nature genetics (01.10.2019)
Published in Nature genetics (01.10.2019)
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Author Correction: Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants
Donovan, Margaret K. R., D’Antonio-Chronowska, Agnieszka, D’Antonio, Matteo, Frazer, Kelly A.
Published in Nature communications (01.09.2020)
Published in Nature communications (01.09.2020)
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Insights into the Mutational Burden of Human Induced Pluripotent Stem Cells from an Integrative Multi-Omics Approach
D’Antonio, Matteo, Benaglio, Paola, Jakubosky, David, Greenwald, William W., Matsui, Hiroko, Donovan, Margaret K.R., Li, He, Smith, Erin N., D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Cell reports (Cambridge) (24.07.2018)
Published in Cell reports (Cambridge) (24.07.2018)
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Journal Article
Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls
Margaret K R Donovan, Yingxiang Huang, John E Blume, Jian Wang, Daniel Hornburg, Shadi Ferdosi, Iman Mohtashemi, Sangtae Kim, Marwin Ko, Ryan W Benz, Theodore L Platt, Serafim Batzoglou, Luis A Diaz, Omid C Farokhzad, Asim Siddiqui
Published in PloS one (29.03.2023)
Published in PloS one (29.03.2023)
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Journal Article
Complex regulatory networks influence pluripotent cell state transitions in human iPSCs
Arthur, Timothy D., Nguyen, Jennifer P., D’Antonio-Chronowska, Agnieszka, Matsui, Hiroko, Silva, Nayara S., Joshua, Isaac N., Luchessi, André D., Greenwald, William W. Young, D’Antonio, Matteo, Pera, Martin F., Frazer, Kelly A.
Published in Nature communications (23.02.2024)
Published in Nature communications (23.02.2024)
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Journal Article
Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease
D’Antonio, Matteo, Nguyen, Jennifer P., Arthur, Timothy D., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Nature communications (28.02.2023)
Published in Nature communications (28.02.2023)
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iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types
Panopoulos, Athanasia D, D'Antonio, Matteo, Benaglio, Paola, Williams, Roy, Hashem, Sherin I, Schuldt, Bernhard M, DeBoever, Christopher, Arias, Angelo D, Garcia, Melvin, Nelson, Bradley C, Harismendy, Olivier, Jakubosky, David A, Donovan, Margaret K R, Greenwald, William W, Farnam, KathyJean, Cook, Megan, Borja, Victor, Miller, Carl A, Grinstein, Jonathan D, Drees, Frauke, Okubo, Jonathan, Diffenderfer, Kenneth E, Hishida, Yuriko, Modesto, Veronica, Dargitz, Carl T, Feiring, Rachel, Zhao, Chang, Aguirre, Aitor, McGarry, Thomas J, Matsui, Hiroko, Li, He, Reyna, Joaquin, Rao, Fangwen, O'Connor, Daniel T, Yeo, Gene W, Evans, Sylvia M, Chi, Neil C, Jepsen, Kristen, Nariai, Naoki, Müller, Franz-Josef, Goldstein, Lawrence S B, Izpisua Belmonte, Juan Carlos, Adler, Eric, Loring, Jeanne F, Berggren, W Travis, D'Antonio-Chronowska, Agnieszka, Smith, Erin N, Frazer, Kelly A
Published in Stem cell reports (11.04.2017)
Published in Stem cell reports (11.04.2017)
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Author Correction: Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease
D’Antonio, Matteo, Nguyen, Jennifer P., Arthur, Timothy D., Matsui, Hiroko, D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Nature communications (20.07.2023)
Published in Nature communications (20.07.2023)
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Association of Human iPSC Gene Signatures and X Chromosome Dosage with Two Distinct Cardiac Differentiation Trajectories
D'Antonio-Chronowska, Agnieszka, Donovan, Margaret K.R., Young Greenwald, William W., Nguyen, Jennifer Phuong, Fujita, Kyohei, Hashem, Sherin, Matsui, Hiroko, Soncin, Francesca, Parast, Mana, Ward, Michelle C., Coulet, Florence, Smith, Erin N., Adler, Eric, D'Antonio, Matteo, Frazer, Kelly A.
Published in Stem cell reports (12.11.2019)
Published in Stem cell reports (12.11.2019)
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Journal Article
Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease
D'Antonio, Matteo, Reyna, Joaquin, Jakubosky, David, Donovan, Margaret Kr, Bonder, Marc-Jan, Matsui, Hiroko, Stegle, Oliver, Nariai, Naoki, D'Antonio-Chronowska, Agnieszka, Frazer, Kelly A
Published in eLife (20.11.2019)
Published in eLife (20.11.2019)
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Journal Article
Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines
Benaglio, Paola, Zhu, Han, Okino, Mei-Lin, Yan, Jian, Elgamal, Ruth, Nariai, Naoki, Beebe, Elisha, Korgaonkar, Katha, Qiu, Yunjiang, Donovan, Margaret K.R., Chiou, Joshua, Wang, Gaowei, Newsome, Jacklyn, Kaur, Jaspreet, Miller, Michael, Preissl, Sebastian, Corban, Sierra, Aylward, Anthony, Taipale, Jussi, Ren, Bing, Frazer, Kelly A., Sander, Maike, Gaulton, Kyle J.
Published in Cell genomics (14.12.2022)
Published in Cell genomics (14.12.2022)
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Journal Article
Insights into the mutational burden of human induced pluripotent stem cells from an integrative omics approach
D’Antonio, Matteo, Benaglio, Paola, Jakubosky, David, Greenwald, William W., Matsui, Hiroko, Donovan, Margaret K. R., Li, He, Smith, Erin N., D’Antonio-Chronowska, Agnieszka, Frazer, Kelly A.
Published in Cell reports (Cambridge) (24.07.2018)
Published in Cell reports (Cambridge) (24.07.2018)
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