Lipid-Loving ANTs: Molecular Simulations of Cardiolipin Interactions and the Organization of the Adenine Nucleotide Translocase in Model Mitochondrial Membranes
Hedger, George, Rouse, Sarah L, Domański, Jan, Chavent, Matthieu, Koldsø, Heidi, Sansom, Mark S. P
Published in Biochemistry (Easton) (15.11.2016)
Published in Biochemistry (Easton) (15.11.2016)
Get full text
Journal Article
Martini 3: a general purpose force field for coarse-grained molecular dynamics
Souza, Paulo C. T., Alessandri, Riccardo, Barnoud, Jonathan, Thallmair, Sebastian, Faustino, Ignacio, Grünewald, Fabian, Patmanidis, Ilias, Abdizadeh, Haleh, Bruininks, Bart M. H., Wassenaar, Tsjerk A., Kroon, Peter C., Melcr, Josef, Nieto, Vincent, Corradi, Valentina, Khan, Hanif M., Domański, Jan, Javanainen, Matti, Martinez-Seara, Hector, Reuter, Nathalie, Best, Robert B., Vattulainen, Ilpo, Monticelli, Luca, Periole, Xavier, Tieleman, D. Peter, de Vries, Alex H., Marrink, Siewert J.
Published in Nature methods (01.04.2021)
Published in Nature methods (01.04.2021)
Get full text
Journal Article
Transmembrane helices can induce domain formation in crowded model membranes
Domański, Jan, Marrink, Siewert J., Schäfer, Lars V.
Published in Biochimica et biophysica acta (01.04.2012)
Published in Biochimica et biophysica acta (01.04.2012)
Get full text
Journal Article
Ligandbook: an online repository for small and drug-like molecule force field parameters
Domanski, Jan, Beckstein, Oliver, Iorga, Bogdan I
Published in Bioinformatics (Oxford, England) (01.06.2017)
Published in Bioinformatics (Oxford, England) (01.06.2017)
Get full text
Journal Article
Atomistic mechanism of transmembrane helix association
Domanski, Jan, Sansom, Mark S. P, Stansfeld, Phillip J, Best, Robert B
Published in PLoS computational biology (01.06.2020)
Published in PLoS computational biology (01.06.2020)
Get full text
Journal Article
Lipidbook: A Public Repository for Force-Field Parameters Used in Membrane Simulations
Domański, Jan, Stansfeld, Phillip J, Sansom, Mark S. P, Beckstein, Oliver
Published in The Journal of membrane biology (01.08.2010)
Published in The Journal of membrane biology (01.08.2010)
Get full text
Journal Article
Multiple lipid binding sites determine the affinity of PH domains for phosphoinositide-containing membranes
Yamamoto, Eiji, Domański, Jan, Naughton, Fiona B, Best, Robert B, Kalli, Antreas C, Stansfeld, Phillip J, Sansom, Mark S P
Published in Science advances (01.02.2020)
Published in Science advances (01.02.2020)
Get full text
Journal Article
Interactions of the EphA2 Kinase Domain with PIPs in Membranes: Implications for Receptor Function
Chavent, Matthieu, Karia, Dimple, Kalli, Antreas C., Domański, Jan, Duncan, Anna L., Hedger, George, Stansfeld, Phillip J., Seiradake, Elena, Jones, E. Yvonne, Sansom, Mark S.P.
Published in Structure (London) (03.07.2018)
Published in Structure (London) (03.07.2018)
Get full text
Journal Article
Mechanism of Assembly of a Transmembrane Helix Dimer from All-Atom Simulation
Best, Robert B., Domanski, Jan, Sansom, Mark S.P., Stansfeld, Phillip
Published in Biophysical journal (02.02.2018)
Published in Biophysical journal (02.02.2018)
Get full text
Journal Article
Studying Membrane Protein Folding by Molecular Dynamics Simulations
Domanski, Jan, Sansom, Mark, Stansfeld, Philip, Best, Robert
Published in Biophysical journal (27.01.2015)
Published in Biophysical journal (27.01.2015)
Get full text
Journal Article
6939 Do an empty sella and a partial empty sella affect the modeling and displacement of the optic chiasm?
Kaluza, Bernadetta, Furmanek, Mariusz, Domanski, Jan, Zuk-Lapan, Aleksandra, Babula, Emilia, Iga, Poprawa, Landowska, Malgorzata, Jarzabek, Karolina, Popczynska, Justyna, Filipowicz, Paulina, Wielgolewska, Malgorzata, Walecki, Jerzy, Franek, Edward M
Published in Journal of the Endocrine Society (05.10.2024)
Published in Journal of the Endocrine Society (05.10.2024)
Get full text
Journal Article
MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations
Gowers, Richard J., Linke, Max, Barnoud, Jonathan, Reddy, Tyler John Edward, Melo, Manuel N., Seyler, Sean L., Domanski, Jan, Dotson, David L., Buchoux, Sebastien, Kenney, Ian M., Beckstein, Oliver
Year of Publication 11.09.2019
Get full text
Year of Publication 11.09.2019
Conference Proceeding