AgBase: a functional genomics resource for agriculture
McCarthy, Fiona M, Wang, Nan, Magee, G Bryce, Nanduri, Bindu, Lawrence, Mark L, Camon, Evelyn B, Barrell, Daniel G, Hill, David P, Dolan, Mary E, Williams, W Paul, Luthe, Dawn S, Bridges, Susan M, Burgess, Shane C
Published in BMC genomics (08.09.2006)
Published in BMC genomics (08.09.2006)
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MouseCyc: a curated biochemical pathways database for the laboratory mouse
Evsikov, Alexei V, Dolan, Mary E, Genrich, Michael P, Patek, Emily, Bult, Carol J
Published in Genome biology (01.01.2009)
Published in Genome biology (01.01.2009)
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Automated generation of gene summaries at the Alliance of Genome Resources
Kishore, Ranjana, Arnaboldi, Valerio, Van Slyke, Ceri E, Chan, Juancarlos, Nash, Robert S, Urbano, Jose M, Dolan, Mary E, Engel, Stacia R, Shimoyama, Mary, Sternberg, Paul W, Genome Resources, the Alliance of
Published in Database : the journal of biological databases and curation (2020)
Published in Database : the journal of biological databases and curation (2020)
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Genomes as geography: using GIS technology to build interactive genome feature maps
Dolan, Mary E, Holden, Constance C, Beard, M Kate, Bult, Carol J
Published in BMC bioinformatics (19.09.2006)
Published in BMC bioinformatics (19.09.2006)
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Ontology engineering
Alterovitz, Gil, Ramoni, Marco F, Xiang, Michael, Hill, David P, Lomax, Jane, Liu, Jonathan, Cherkassky, Michael, Dreyfuss, Jonathan, Mungall, Chris, Harris, Midori A, Dolan, Mary E, Blake, Judith A
Published in Nature biotechnology (01.02.2010)
Published in Nature biotechnology (01.02.2010)
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Application of comparative biology in GO functional annotation: the mouse model
Drabkin, Harold J., Christie, Karen R., Dolan, Mary E., Hill, David P., Ni, Li, Sitnikov, Dmitry, Blake, Judith A.
Published in Mammalian genome (01.10.2015)
Published in Mammalian genome (01.10.2015)
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Methodology for the inference of gene function from phenotype data
Ascensao, Joao A, Dolan, Mary E, Hill, David P, Blake, Judith A
Published in BMC bioinformatics (12.12.2014)
Published in BMC bioinformatics (12.12.2014)
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Journal Article
Orthology for comparative genomics in the mouse genome database
Dolan, Mary E., Baldarelli, Richard M., Bello, Susan M., Ni, Li, McAndrews, Monica S., Bult, Carol J., Kadin, James A., Richardson, Joel E., Ringwald, Martin, Eppig, Janan T., Blake, Judith A.
Published in Mammalian genome (01.08.2015)
Published in Mammalian genome (01.08.2015)
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Journal Article
Disease model curation improvements at Mouse Genome Informatics
Bello, Susan M, Richardson, Joel E, Davis, Allan P, Wiegers, Thomas C, Mattingly, Carolyn J, Dolan, Mary E, Smith, Cynthia L, Blake, Judith A, Eppig, Janan T
Published in Database : the journal of biological databases and curation (2012)
Published in Database : the journal of biological databases and curation (2012)
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Journal Article
The Gene Ontology knowledgebase in 2023
Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Ebert, Dustin, Harris, Nomi L, Moxon, Sierra, Mungall, Christopher J, Sternberg, Paul W, Thomas, Paul D, Quaglia, Federica, Giglio, Michelle, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gil, Tabone, Christopher J, Zhou, Pinglei, Ahmed, Saadullah H, Asanitthong, Praoparn, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Michalak, Aleksandra, Pritazahra, Armalya, Saverimuttu, Shirin C C, Su, Renzhi, Thurlow, Kate E, Lovering, Ruth C, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Corbani, Lori, Ni, Li, Sitnikov, Dmitry, Smith, Cynthia, Seager, James, Cooper, Laurel, Jaiswal, Pankaj, Naithani, Sushma, Lera-Ramirez, Manuel, Rutherford, Kim, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kwitek, Anne E, Laulederkind, Stanley J F, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Axelsen, Kristian, Aleksander, Suzi A, Engel, Stacia R, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Berardini, Tanya Z, Reiser, Leonore, Auchincloss, Andrea, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Gruaz-Gumowski, Nadine, Hulo, Chantal, Jungo, Florence, Le Mercier, Philippe, Masson, Patrick, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Rivoire, Catherine, Sundaram, Shyamala, Bowler-Barnett, Emily, Denny, Paul, Ignatchenko, Alexandr, Lock, Antonia, Magrane, Michele, Martin, Maria J, Raposo, Pedro, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Zaru, Rossana, Diehl, Alexander D, Lee, Raymond, Chan, Juancarlos, Zarowiecki, Magdalena, Fisher, Malcolm, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla
Published in Genetics (Austin) (04.05.2023)
Published in Genetics (Austin) (04.05.2023)
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Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology
Blake, Judith A, Baldarelli, Richard, Kadin, James A, Richardson, Joel E, Smith, Cynthia L, Bult, Carol J
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Web Resource
High-throughput discovery of novel developmental phenotypes
Dickinson, Mary E, Flenniken, Ann M, Ji, Xiao, Teboul, Lydia, Wong, Michael D, White, Jacqueline K, Meehan, Terrence F, Weninger, Wolfgang J, Westerberg, Henrik, Adissu, Hibret, Baker, Candice N, Bower, Lynette, Brown, James M, Caddle, L Brianna, Chiani, Francesco, Clary, Dave, Cleak, James, Daly, Mark J, Denegre, James M, Doe, Brendan, Dolan, Mary E, Edie, Sarah M, Fuchs, Helmut, Gailus-Durner, Valerie, Galli, Antonella, Gambadoro, Alessia, Gallegos, Juan, Guo, Shiying, Horner, Neil R, Hsu, Chih-Wei, Johnson, Sara J, Kalaga, Sowmya, Keith, Lance C, Lanoue, Louise, Lawson, Thomas N, Lek, Monkol, Mark, Manuel, Marschall, Susan, Mason, Jeremy, McElwee, Melissa L, Newbigging, Susan, Nutter, Lauryl M J, Peterson, Kevin A, Ramirez-Solis, Ramiro, Rowland, Douglas J, Ryder, Edward, Samocha, Kaitlin E, Seavitt, John R, Selloum, Mohammed, Szoke-Kovacs, Zsombor, Tamura, Masaru, Trainor, Amanda G, Tudose, Ilinca, Wakana, Shigeharu, Warren, Jonathan, Wendling, Olivia, West, David B, Wong, Leeyean, Yoshiki, Atsushi, MacArthur, Daniel G, Tocchini-Valentini, Glauco P, Gao, Xiang, Flicek, Paul, Bradley, Allan, Skarnes, William C, Justice, Monica J, Parkinson, Helen E, Moore, Mark, Wells, Sara, Braun, Robert E, Svenson, Karen L, de Angelis, Martin Hrabe, Herault, Yann, Mohun, Tim, Mallon, Ann-Marie, Henkelman, R Mark, Brown, Steve D M, Adams, David J, Lloyd, K C Kent, McKerlie, Colin, Beaudet, Arthur L, Bućan, Maja, Murray, Stephen A
Published in Nature (London) (22.09.2016)
Published in Nature (London) (22.09.2016)
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Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease
Dolan, Mary E, Hill, David P, Mukherjee, Gaurab, McAndrews, Monica S, Chesler, Elissa J, Blake, Judith A
Published in bioRxiv (21.09.2020)
Published in bioRxiv (21.09.2020)
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Paper
Alliance of Genome Resources Portal: unified model organism research platform
Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzi, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Bello, Susan M, Blake, Judith A, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Cherry, J Michael, Cho, Jaehyoung, Christie, Karen R, Crosby, Madeline A, Pons, Jeff De, Dolan, Mary E, Santos, Gilberto dos, Dunn, Barbara, Dunn, Nathan, Eagle, Anne, Ebert, Dustin, Engel, Stacia R, Fashena, David, Frazer, Ken, Gao, Sibyl, Gondwe, Felix, Goodman, Josh, Gramates, L Sian, Grove, Christian A, Harris, Todd, Harrison, Marie-Claire, Howe, Douglas G, Howe, Kevin L, Jha, Sagar, Kadin, James A, Kaufman, Thomas C, Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Laulederkind, Stan, Lee, Raymond, MacPherson, Kevin A, Marygold, Steven J, Matthews, Beverley, Millburn, Gillian, Miyasato, Stuart, Moxon, Sierra, Mueller, Hans-Michael, Mungall, Christopher, Muruganujan, Anushya, Mushayahama, Tremayne, Nash, Robert S, Ng, Patrick, Paulini, Michael, Perrimon, Norbert, Pich, Christian, Raciti, Daniela, Richardson, Joel E, Russell, Matthew, Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Shimoyama, Mary, Simison, Matt, Smith, Cynthia, Shaw, David R, Shrivatsav, Ajay, Skrzypek, Marek, Smith, Jennifer R, Sternberg, Paul W, Tabone, Christopher J, Thomas, Paul D, Thota, Jyothi, Toro, Sabrina, Tomczuk, Monika, Tutaj, Marek, Tutaj, Monika, Urbano, Jose-Maria, Auken, Kimberly Van, Slyke, Ceri E Van, Wang, Shur-Jen, Weng, Shuai, Westerfield, Monte, Williams, Gary, Wong, Edith D, Wright, Adam, Yook, Karen
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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Journal Article
Harmonizing model organism data in the Alliance of Genome Resources
Albou, Laurent-Philippe, Alexander, Micheal, Antonazzo, Giulia, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blake, Judith A, Blodgett, Olin, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Michael Cherry, J, Crosby, Madeline A, da Veiga Beltrame, Eduardo, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, dos Santos, Gilberto, Douglass, Eric, Eagle, Anne, Engel, Stacia R, Fashena, David, Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gibson, Adam C, Gondwe, Felix, Goodman, Josh, Sian Gramates, L, Grove, Christian A, Hale, Paul, Harris, Todd, Thomas Hayman, G, Hill, David P, Howe, Douglas G, Howe, Kevin L, Hu, Yanhui, Jha, Sagar, Kadin, James A, Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A, Martin, Ryan, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Muller, Hans-Michael, Mungall, Christopher J, Nash, Robert S, Ng, Patrick, Nuin, Paulo, Paddock, Holly, Paulini, Michael, Perrimon, Norbert, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Shrivatsav, Ajay, Skrzypek, Marek, Smith, Constance M, Smith, Cynthia L, Smith, Jennifer R, Stein, Lincoln, Tabone, Christopher J, Thomas, Paul D, Thorat, Ketaki, Thota, Jyothi, Toro, Sabrina, Tomczuk, Monika, Tutaj, Marek A, Tutaj, Monika, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E, Wang, Shur-Jen, Weng, Shuai, Westerfield, Monte, Williams, Gary, Wilming, Laurens G, Wong, Edith D, Wright, Adam, Yook, Karen, Zarowiecki, Magdalena, Zhou, Pinglei
Published in Genetics (Austin) (04.04.2022)
Published in Genetics (Austin) (04.04.2022)
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Updates to the Alliance of Genome Resources central infrastructure
Aleksander, Suzanne A, Anagnostopoulos, Anna V, Antonazzo, Giulia, Arnaboldi, Valerio, Attrill, Helen, Bello, Susan M, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Cherry, J Michael, Cho, Jaehyoung, Crosby, Madeline A, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Dyer, Sarah, Ebert, Dustin, Engel, Stacia R, Fashena, David, Fisher, Malcolm, Foley, Saoirse, Gibson, Adam C, Gollapally, Varun R, Gramates, L Sian, Grove, Christian A, Hale, Paul, Harris, Todd, Hayman, G Thomas, Hu, Yanhui, James-Zorn, Christina, Karimi, Kamran, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, Markarian, Nicholas, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nash, Robert S, Nuin, Paulo, Paddock, Holly, Pells, Troy, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schindelman, Gary, Shaw, David R, Sherlock, Gavin, Shrivatsav, Ajay, Singer, Amy, Smith, Constance M, Smith, Cynthia L, Smith, Jennifer R, Stein, Lincoln, Sternberg, Paul W, Tabone, Christopher J, Thomas, Paul D, Thorat, Ketaki, Thota, Jyothi, Tomczuk, Monika, Trovisco, Vitor, Tutaj, Marek A, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E, Vize, Peter D, Wang, Qinghua, Weng, Shuai, Westerfield, Monte, Wilming, Laurens G, Wong, Edith D, Wright, Adam, Yook, Karen, Zhou, Pinglei, Zorn, Aaron, Zytkovicz, Mark
Published in Genetics (Austin) (07.05.2024)
Published in Genetics (Austin) (07.05.2024)
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