Improved Ribo-seq enables identification of cryptic translation events
Erhard, Florian, Halenius, Anne, Zimmermann, Cosima, L'Hernault, Anne, Kowalewski, Daniel J, Weekes, Michael P, Stevanovic, Stefan, Zimmer, Ralf, Dölken, Lars
Published in Nature methods (01.05.2018)
Published in Nature methods (01.05.2018)
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Journal Article
Risk factors for herpes simplex virus type-1 infection and reactivation: Cross-sectional studies among EPIC-Norfolk participants
Forbes, Harriet, Warne, Ben, Doelken, Lars, Brenner, Nicole, Waterboer, Tim, Luben, Robert, Wareham, Nicholas J, Warren-Gash, Charlotte, Gkrania-Klotsas, Effrossyni
Published in PloS one (09.05.2019)
Published in PloS one (09.05.2019)
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Journal Article
Identification of the Cryptic HLA-I Immunopeptidome
Erhard, Florian, Dölken, Lars, Schilling, Bastian, Schlosser, Andreas
Published in Cancer immunology research (01.08.2020)
Published in Cancer immunology research (01.08.2020)
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Journal Article
Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
Narain, Ashwin, Bhandare, Pranjali, Adhikari, Bikash, Backes, Simone, Eilers, Martin, Dölken, Lars, Schlosser, Andreas, Erhard, Florian, Baluapuri, Apoorva, Wolf, Elmar
Published in Molecular cell (05.08.2021)
Published in Molecular cell (05.08.2021)
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Journal Article
scSLAM-seq reveals core features of transcription dynamics in single cells
Erhard, Florian, Baptista, Marisa A P, Krammer, Tobias, Hennig, Thomas, Lange, Marius, Arampatzi, Panagiota, Jürges, Christopher S, Theis, Fabian J, Saliba, Antoine-Emmanuel, Dölken, Lars
Published in Nature (London) (01.07.2019)
Published in Nature (London) (01.07.2019)
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Journal Article
Integrative transcription start site identification with iTiSS
Jürges, Christopher S, Dölken, Lars, Erhard, Florian
Published in Bioinformatics (Oxford, England) (29.09.2021)
Published in Bioinformatics (Oxford, England) (29.09.2021)
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Journal Article
Widespread disruption of host transcription termination in HSV-1 infection
Rutkowski, Andrzej J, Erhard, Florian, L'Hernault, Anne, Bonfert, Thomas, Schilhabel, Markus, Crump, Colin, Rosenstiel, Philip, Efstathiou, Stacey, Zimmer, Ralf, Friedel, Caroline C, Dölken, Lars
Published in Nature communications (20.05.2015)
Published in Nature communications (20.05.2015)
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Journal Article
Very Low Incidence of SARS-CoV-2, Influenza and RSV but High Incidence of Rhino-, Adeno- and Endemic Coronaviruses in Children With Acute Respiratory Infection in Primary Care Pediatric Practices During the Second and Third Wave of the SARS-CoV-2 Pandemic
Engels, Geraldine, Sack, Johanna, Weissbrich, Benedikt, Hartmann, Katrin, Knies, Kerstin, Härtel, Christoph, Streng, Andrea, Dölken, Lars, Liese, Johannes G
Published in The Pediatric infectious disease journal (01.04.2022)
Published in The Pediatric infectious disease journal (01.04.2022)
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Journal Article
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
Friedel, Caroline C, Dölken, Lars, Ruzsics, Zsolt, Koszinowski, Ulrich H, Zimmer, Ralf
Published in Nucleic acids research (01.09.2009)
Published in Nucleic acids research (01.09.2009)
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Journal Article
The SARS-CoV-2 RNA-protein interactome in infected human cells
Schmidt, Nora, Lareau, Caleb A, Keshishian, Hasmik, Ganskih, Sabina, Schneider, Cornelius, Hennig, Thomas, Melanson, Randy, Werner, Simone, Wei, Yuanjie, Zimmer, Matthias, Ade, Jens, Kirschner, Luisa, Zielinski, Sebastian, Dölken, Lars, Lander, Eric S, Caliskan, Neva, Fischer, Utz, Vogel, Jörg, Carr, Steven A, Bodem, Jochen, Munschauer, Mathias
Published in Nature microbiology (01.03.2021)
Published in Nature microbiology (01.03.2021)
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Journal Article
Selective inhibition of miRNA processing by a herpesvirus-encoded miRNA
Hennig, Thomas, Prusty, Archana B, Kaufer, Benedikt B, Whisnant, Adam W, Lodha, Manivel, Enders, Antje, Thomas, Julius, Kasimir, Francesca, Grothey, Arnhild, Klein, Teresa, Herb, Stefanie, Jürges, Christopher, Sauer, Markus, Fischer, Utz, Rudel, Thomas, Meister, Gunter, Erhard, Florian, Dölken, Lars, Prusty, Bhupesh K
Published in Nature (London) (19.05.2022)
Published in Nature (London) (19.05.2022)
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Journal Article
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data
Berg, Kevin, Lodha, Manivel, Delazer, Isabel, Bartosik, Karolina, Garcia, Yilliam Cruz, Hennig, Thomas, Wolf, Elmar, Dölken, Lars, Lusser, Alexandra, Prusty, Bhupesh K, Erhard, Florian
Published in Nucleic acids research (24.04.2024)
Published in Nucleic acids research (24.04.2024)
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Journal Article
Widespread context dependency of microRNA-mediated regulation
Erhard, Florian, Haas, Jürgen, Lieber, Diana, Malterer, Georg, Jaskiewicz, Lukasz, Zavolan, Mihaela, Dölken, Lars, Zimmer, Ralf
Published in Genome research (01.06.2014)
Published in Genome research (01.06.2014)
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Journal Article
P-TEFb Activation by RBM7 Shapes a Pro-survival Transcriptional Response to Genotoxic Stress
Bugai, Andrii, Quaresma, Alexandre J.C., Friedel, Caroline C., Lenasi, Tina, Düster, Robert, Sibley, Christopher R., Fujinaga, Koh, Kukanja, Petra, Hennig, Thomas, Blasius, Melanie, Geyer, Matthias, Ule, Jernej, Dölken, Lars, Barborič, Matjaž
Published in Molecular cell (18.04.2019)
Published in Molecular cell (18.04.2019)
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Journal Article
PARma: identification of microRNA target sites in AGO-PAR-CLIP data
Erhard, Florian, Dölken, Lars, Jaskiewicz, Lukasz, Zimmer, Ralf
Published in Genome biology (29.07.2013)
Published in Genome biology (29.07.2013)
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Journal Article
CDK8 Kinase Phosphorylates Transcription Factor STAT1 to Selectively Regulate the Interferon Response
Bancerek, Joanna, Poss, Zachary C., Steinparzer, Iris, Sedlyarov, Vitaly, Pfaffenwimmer, Thaddäus, Mikulic, Ivana, Dölken, Lars, Strobl, Birgit, Müller, Mathias, Taatjes, Dylan J., Kovarik, Pavel
Published in Immunity (Cambridge, Mass.) (21.02.2013)
Published in Immunity (Cambridge, Mass.) (21.02.2013)
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Journal Article
Immunogenicity and safety of coadministration of COVID-19 and influenza vaccination
Wagenhäuser, Isabell, Reusch, Julia, Gabel, Alexander, Höhn, Anna, Lâm, Thiên-Trí, Almanzar, Giovanni, Prelog, Martina, Krone, Lukas B, Frey, Anna, Schubert-Unkmeir, Alexandra, Dölken, Lars, Frantz, Stefan, Kurzai, Oliver, Vogel, Ulrich, Petri, Nils, Krone, Manuel
Published in The European respiratory journal (01.01.2023)
Published in The European respiratory journal (01.01.2023)
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Journal Article