Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity
Shlesinger, Danielle, Hong, Kai-Lin, Shammas, Ghazal, Page, Nicolas, Sandu, Ioana, Agrafiotis, Andreas, Kreiner, Victor, Fonta, Nicolas, Vincenti, Ilena, Wagner, Ingrid, Piccinno, Margot, Mariotte, Alexandre, Klimek, Bogna, Dizerens, Raphael, Manero-Carranza, Marcos, Kuhn, Raphael, Ehling, Roy, Frei, Lester, Khodaverdi, Keywan, Panetti, Camilla, Joller, Nicole, Oxenius, Annette, Merkler, Doron, Reddy, Sai T., Yermanos, Alexander
Published in Genes and immunity (01.09.2022)
Published in Genes and immunity (01.09.2022)
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Journal Article
ePlatypus: an ecosystem for computational analysis of immunogenomics data
Cotet, Tudor-Stefan, Agrafiotis, Andreas, Kreiner, Victor, Kuhn, Raphael, Shlesinger, Danielle, Manero-Carranza, Marcos, Khodaverdi, Keywan, Kladis, Evgenios, Desideri Perea, Aurora, Maassen-Veeters, Dylan, Glänzer, Wiona, Massery, Solène, Guerci, Lorenzo, Hong, Kai-Lin, Han, Jiami, Stiklioraitis, Kostas, D’Arcy, Vittoria Martinolli, Dizerens, Raphael, Kilchenmann, Samuel, Stalder, Lucas, Nissen, Leon, Vogelsanger, Basil, Anzböck, Stine, Laslo, Daria, Bakker, Sophie, Kondorosy, Melinda, Venerito, Marco, Sanz García, Alejandro, Feller, Isabelle, Oxenius, Annette, Reddy, Sai T, Yermanos, Alexander
Published in Bioinformatics (Oxford, England) (02.09.2023)
Published in Bioinformatics (Oxford, England) (02.09.2023)
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Journal Article
Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS
Agrafiotis, Andreas, Dizerens, Raphael, Vincenti, Ilena, Wagner, Ingrid, Kuhn, Raphael, Shlesinger, Danielle, Manero-Carranza, Marcos, Cotet, Tudor-Stefan, Hong, Kai-Lin, Page, Nicolas, Fonta, Nicolas, Shammas, Ghazal, Mariotte, Alexandre, Piccinno, Margot, Kreutzfeldt, Mario, Gruntz, Benedikt, Ehling, Roy, Genovese, Alessandro, Pedrioli, Alessandro, Dounas, Andreas, Franzenburg, Sören, Tumani, Hayrettin, Kümpfel, Tania, Kavaka, Vladyslav, Gerdes, Lisa Ann, Dornmair, Klaus, Beltrán, Eduardo, Oxenius, Annette, Reddy, Sai T., Merkler, Doron, Yermanos, Alexander
Published in Acta neuropathologica (01.03.2023)
Published in Acta neuropathologica (01.03.2023)
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Journal Article
Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes
Han, Jiami, Masserey, Solène, Shlesinger, Danielle, Kuhn, Raphael, Papadopoulou, Chrysa, Agrafiotis, Andreas, Kreiner, Victor, Dizerens, Raphael, Hong, Kai-Lin, Weber, Cédric, Greiff, Victor, Oxenius, Annette, Reddy, Sai T, Yermanos, Alexander
Published in Bioinformatics advances (2022)
Published in Bioinformatics advances (2022)
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Journal Article
Echidna: integrated simulations of single-cell immune receptor repertoires and transcriptomes
Han, Jiami, Kuhn, Raphael, Papadopoulou, Chrysa, Agrafiotis, Andreas, Kreiner, Victor, Shlesinger, Danielle, Dizerens, Raphael, Kai-Lin, Hong, Weber, Cedric, Greiff, Victor, Oxenius, Annette, Reddy, Sai T, Yermanos, Alexander
Published in bioRxiv (19.07.2021)
Published in bioRxiv (19.07.2021)
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Paper
ePlatypus: an ecosystem for computational analysis of immunogenomics data
Kreiner, Victor, Agrafiotis, Andreas, Tudor-Stefan Cotet, Kuhn, Raphael, Shlesinger, Danielle, Manero-Carranza, Marcos, Khodaverdi, Keywan, Masserey, Solène, Guerci, Lorenzo, Kai-Lin, Hong, Han, Jiami, Stiklioraitis, Kostas, Martinolli, Vittoria, Dizerens, Raphael, Kilchenmann, Samuel, Stalder, Lucas, Nissen, Leon, Vogelsanger, Basil, Stine Anzböck, Laslo, Daria, Kondorosy, Melinda, Venerito, Marcos, Alejandro Sanz García, Feller, Isabelle, Oxenius, Annette, Reddy, Sai T, Yermanos, Alexander
Published in bioRxiv (28.09.2022)
Published in bioRxiv (28.09.2022)
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Paper
Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity
Shlesinger, Danielle, Kai-Lin, Hong, Shammas, Ghazal, Page, Nicolas, Sandu, Ioana, Agrafiotis, Andreas, Kreiner, Victor, Fonta, Nicolas, Vincenti, Ilena, Wagner, Ingrid, Piccinno, Margot, Mariotte, Alexandre, Klimek, Bogna, Dizerens, Raphael, Manero-Carranza, Marcos, Kuhn, Raphael, Ehling, Roy, Frei, Lester, Khodaverdi, Keywan, Panetti, Camilla, Joller, Nicole, Oxenius, Annette, Merkler, Doron, Reddy, Sai T, Yermanos, Alexander
Published in bioRxiv (10.02.2022)
Published in bioRxiv (10.02.2022)
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Paper