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Published in Nature communications (25.08.2021)
Published in Nature communications (25.08.2021)
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Segmental duplications and their variation in a complete human genome
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Published in Science (American Association for the Advancement of Science) (01.04.2022)
Published in Science (American Association for the Advancement of Science) (01.04.2022)
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Long-read sequence and assembly of segmental duplications
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Published in Nature methods (01.01.2019)
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AGAP duplicons associate with structural diversity at Chromosome 10q11.22
Fornezza, Stefania, Delvecchio, Vincenza Simona, Harvey, William T, Dishuck, Philip C, Eichler, Evan E, Giannuzzi, Giuliana
Published in Genome research (29.10.2024)
Published in Genome research (29.10.2024)
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Independent expansion, selection and hypervariability of the TBC1D3 gene family in humans
Guitart, Xavi, Porubsky, David, Yoo, DongAhn, Dougherty, Max L, Dishuck, Philip, Munson, Katherine M, Lewis, Alexandra P, Hoekzema, Kendra, Knuth, Jordan, Chang, Stephen, Pastinen, Tomi, Eichler, Evan E
Published in Genome research (06.08.2024)
Published in Genome research (06.08.2024)
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Assembly of 43 human Y chromosomes reveals extensive complexity and variation
Hallast, Pille, Ebert, Peter, Loftus, Mark, Yilmaz, Feyza, Audano, Peter A., Logsdon, Glennis A., Bonder, Marc Jan, Zhou, Weichen, Höps, Wolfram, Kim, Kwondo, Li, Chong, Hoyt, Savannah J., Dishuck, Philip C., Porubsky, David, Tsetsos, Fotios, Kwon, Jee Young, Zhu, Qihui, Munson, Katherine M., Hasenfeld, Patrick, Harvey, William T., Lewis, Alexandra P., Kordosky, Jennifer, Hoekzema, Kendra, O’Neill, Rachel J., Korbel, Jan O., Tyler-Smith, Chris, Eichler, Evan E., Shi, Xinghua, Beck, Christine R., Marschall, Tobias, Konkel, Miriam K., Lee, Charles
Published in Nature (London) (14.09.2023)
Published in Nature (London) (14.09.2023)
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Structurally divergent and recurrently mutated regions of primate genomes
Mao, Yafei, Harvey, William T., Porubsky, David, Munson, Katherine M., Hoekzema, Kendra, Lewis, Alexandra P., Audano, Peter A., Rozanski, Allison, Yang, Xiangyu, Zhang, Shilong, Yoo, DongAhn, Gordon, David S., Fair, Tyler, Wei, Xiaoxi, Logsdon, Glennis A., Haukness, Marina, Dishuck, Philip C., Jeong, Hyeonsoo, del Rosario, Ricardo, Bauer, Vanessa L., Fattor, Will T., Wilkerson, Gregory K., Mao, Yuxiang, Shi, Yongyong, Sun, Qiang, Lu, Qing, Paten, Benedict, Bakken, Trygve E., Pollen, Alex A., Feng, Guoping, Sawyer, Sara L., Warren, Wesley C., Carbone, Lucia, Eichler, Evan E.
Published in Cell (14.03.2024)
Published in Cell (14.03.2024)
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SVbyEye: A visual tool to characterize structural variation among whole-genome assemblies
Porubsky, David, Guitart, Xavi, Yoo, DongAhn, Dishuck, Philip C, Harvey, William T, Eichler, Evan E
Published in bioRxiv (17.09.2024)
Published in bioRxiv (17.09.2024)
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Structural polymorphism and diversity of human segmental duplications
Jeong, Hyeonsoo, Dishuck, Philip C, Yoo, DongAhn, Harvey, William T, Munson, Katherine M, Lewis, Alexandra P, Kordosky, Jennifer, Garcia, Gage H, Yilmaz, Feyza, Hallast, Pille, Lee, Charles, Pastinen, Tomi, Eichler, Evan E
Published in bioRxiv (06.06.2024)
Published in bioRxiv (06.06.2024)
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Independent expansion, selection and hypervariability of the TBC1D3 gene family in humans
Guitart, Xavi, Porubsky, David, Yoo, DongAhn, Dougherty, Max L, Dishuck, Philip C, Munson, Katherine M, Lewis, Alexandra P, Hoekzema, Kendra, Knuth, Jordan, Chang, Stephen, Pastinen, Tomi, Eichler, Evan E
Published in bioRxiv (13.03.2024)
Published in bioRxiv (13.03.2024)
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The structure, function and evolution of a complete human chromosome 8
Logsdon, Glennis A., Vollger, Mitchell R., Hsieh, PingHsun, Mao, Yafei, Liskovykh, Mikhail A., Koren, Sergey, Nurk, Sergey, Mercuri, Ludovica, Dishuck, Philip C., Rhie, Arang, de Lima, Leonardo G., Dvorkina, Tatiana, Porubsky, David, Harvey, William T., Mikheenko, Alla, Bzikadze, Andrey V., Kremitzki, Milinn, Graves-Lindsay, Tina A., Jain, Chirag, Hoekzema, Kendra, Murali, Shwetha C., Munson, Katherine M., Baker, Carl, Sorensen, Melanie, Lewis, Alexandra M., Surti, Urvashi, Gerton, Jennifer L., Larionov, Vladimir, Ventura, Mario, Miga, Karen H., Phillippy, Adam M., Eichler, Evan E.
Published in Nature (London) (06.05.2021)
Published in Nature (London) (06.05.2021)
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Structurally divergent and recurrently mutated regions of primate genomes
Mao, Yafei, Harvey, William T, Porubsky, David, Munson, Katherine M, Hoekzema, Kendra, Lewis, Alexandra P, Audano, Peter A, Rozanski, Allison, Yang, Xiangyu, Zhang, Shilong, Gordon, David S, Wei, Xiaoxi, Logsdon, Glennis A, Haukness, Marina, Dishuck, Philip C, Jeong, Hyeonsoo, Del Rosario, Ricardo, Bauer, Vanessa L, Fattor, Will T, Wilkerson, Gregory K, Lu, Qing, Paten, Benedict, Feng, Guoping, Sawyer, Sara L, Warren, Wesley C, Carbone, Lucia, Eichler, Evan E
Published in bioRxiv : the preprint server for biology (07.03.2023)
Published in bioRxiv : the preprint server for biology (07.03.2023)
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Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility
Warren, Wesley C, Harris, R Alan, Haukness, Marina, Fiddes, Ian T, Murali, Shwetha C, Fernandes, Jason, Dishuck, Philip C, Storer, Jessica M, Raveendran, Muthuswamy, Hillier, LaDeana W, Porubsky, David, Mao, Yafei, Gordon, David, Vollger, Mitchell R, Lewis, Alexandra P, Munson, Katherine M, DeVogelaere, Elizabeth, Armstrong, Joel, Diekhans, Mark, Walker, Jerilyn A, Tomlinson, Chad, Graves-Lindsay, Tina A, Kremitzki, Milinn, Salama, Sofie R, Audano, Peter A, Escalona, Merly, Maurer, Nicholas W, Antonacci, Francesca, Mercuri, Ludovica, Maggiolini, Flavia A M, Catacchio, Claudia Rita, Underwood, Jason G, O'Connor, David H, Sanders, Ashley D, Korbel, Jan O, Ferguson, Betsy, Kubisch, H Michael, Picker, Louis, Kalin, Ned H, Rosene, Douglas, Levine, Jon, Abbott, David H, Gray, Stanton B, Sanchez, Mar M, Kovacs-Balint, Zsofia A, Kemnitz, Joseph W, Thomasy, Sara M, Roberts, Jeffrey A, Kinnally, Erin L, Capitanio, John P, Skene, J H Pate, Platt, Michael, Cole, Shelley A, Green, Richard E, Ventura, Mario, Wiseman, Roger W, Paten, Benedict, Batzer, Mark A, Rogers, Jeffrey, Eichler, Evan E
Published in Science (American Association for the Advancement of Science) (18.12.2020)
Published in Science (American Association for the Advancement of Science) (18.12.2020)
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A high-quality bonobo genome refines the analysis of hominid evolution
Mao, Yafei, Catacchio, Claudia R., Hillier, LaDeana W., Porubsky, David, Li, Ruiyang, Sulovari, Arvis, Fernandes, Jason D., Montinaro, Francesco, Gordon, David S., Storer, Jessica M., Haukness, Marina, Fiddes, Ian T., Murali, Shwetha Canchi, Dishuck, Philip C., Hsieh, PingHsun, Harvey, William T., Audano, Peter A., Mercuri, Ludovica, Piccolo, Ilaria, Antonacci, Francesca, Munson, Katherine M., Lewis, Alexandra P., Baker, Carl, Underwood, Jason G., Hoekzema, Kendra, Huang, Tzu-Hsueh, Sorensen, Melanie, Walker, Jerilyn A., Hoffman, Jinna, Thibaud-Nissen, Françoise, Salama, Sofie R., Pang, Andy W. C., Lee, Joyce, Hastie, Alex R., Paten, Benedict, Batzer, Mark A., Diekhans, Mark, Ventura, Mario, Eichler, Evan E.
Published in Nature (London) (03.06.2021)
Published in Nature (London) (03.06.2021)
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The structure, function, and evolution of a complete human chromosome 8
Logsdon, Glennis A, Vollger, Mitchell R, Hsieh, Pinghsun, Mao, Yafei, Liskovykh, Mikhail A, Koren, Sergey, Nurk, Sergey, Mercuri, Ludovica, Dishuck, Philip C, Rhie, Arang, De Lima, Leonardo G, Porubsky, David, Bzikadze, Andrey V, Kremitzki, Milinn, Graves-Lindsay, Tina A, Jain, Chirag, Hoekzema, Kendra, Murali, Shwetha C, Munson, Katherine M, Baker, Carl, Sorensen, Melanie, Lewis, Alexandra M, Surti, Urvashi, Gerton, Jennifer L, Larionov, Vladimir, Ventura, Mario, Miga, Karen H, Phillippy, Adam M, Eichler, Evan E
Published in bioRxiv (08.09.2020)
Published in bioRxiv (08.09.2020)
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