Tissue-specific cell-free DNA degradation quantifies circulating tumor DNA burden
Zhu, Guanhua, Guo, Yu A., Ho, Danliang, Poon, Polly, Poh, Zhong Wee, Wong, Pui Mun, Gan, Anna, Chang, Mei Mei, Kleftogiannis, Dimitrios, Lau, Yi Ting, Tay, Brenda, Lim, Wan Jun, Chua, Clarinda, Tan, Tira J., Koo, Si-Lin, Chong, Dawn Q., Yap, Yoon Sim, Tan, Iain, Ng, Sarah, Skanderup, Anders J.
Published in Nature communications (13.04.2021)
Published in Nature communications (13.04.2021)
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Journal Article
DWFS: a wrapper feature selection tool based on a parallel genetic algorithm
Soufan, Othman, Kleftogiannis, Dimitrios, Kalnis, Panos, Bajic, Vladimir B
Published in PloS one (26.02.2015)
Published in PloS one (26.02.2015)
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Journal Article
Editorial: Cancer evolution
Ermini, Luca, Mallo, Diego, Kleftogiannis, Dimitrios, Acar, Ahmet
Published in Frontiers in genetics (14.04.2023)
Published in Frontiers in genetics (14.04.2023)
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Journal Article
Hypoxia induced responses are reflected in the stromal proteome of breast cancer
Kjølle, Silje, Finne, Kenneth, Birkeland, Even, Ardawatia, Vandana, Winge, Ingeborg, Aziz, Sura, Knutsvik, Gøril, Wik, Elisabeth, Paulo, Joao A., Vethe, Heidrun, Kleftogiannis, Dimitrios, Akslen, Lars A.
Published in Nature communications (22.06.2023)
Published in Nature communications (22.06.2023)
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Journal Article
Early response evaluation by single cell signaling profiling in acute myeloid leukemia
Tislevoll, Benedicte Sjo, Hellesøy, Monica, Fagerholt, Oda Helen Eck, Gullaksen, Stein-Erik, Srivastava, Aashish, Birkeland, Even, Kleftogiannis, Dimitrios, Ayuda-Durán, Pilar, Piechaczyk, Laure, Tadele, Dagim Shiferaw, Skavland, Jørn, Baliakas, Panagotis, Hovland, Randi, Andresen, Vibeke, Seternes, Ole Morten, Tvedt, Tor Henrik Anderson, Aghaeepour, Nima, Gavasso, Sonia, Porkka, Kimmo, Jonassen, Inge, Fløisand, Yngvar, Enserink, Jorrit, Blaser, Nello, Gjertsen, Bjørn Tore
Published in Nature communications (07.01.2023)
Published in Nature communications (07.01.2023)
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Journal Article
Development, application and evaluation of a 1-D full life cycle anchovy and sardine model for the North Aegean Sea (Eastern Mediterranean)
Gkanasos, Athanasios, Somarakis, Stylianos, Tsiaras, Kostas, Kleftogiannis, Dimitrios, Giannoulaki, Marianna, Schismenou, Eudoxia, Sofianos, Sarantis, Triantafyllou, George
Published in PloS one (15.08.2019)
Published in PloS one (15.08.2019)
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Journal Article
Author Correction: Early response evaluation by single cell signaling profiling in acute myeloid leukemia
Tislevoll, Benedicte Sjo, Hellesøy, Monica, Fagerholt, Oda Helen Eck, Gullaksen, Stein-Erik, Srivastava, Aashish, Birkeland, Even, Kleftogiannis, Dimitrios, Ayuda-Durán, Pilar, Piechaczyk, Laure, Tadele, Dagim Shiferaw, Skavland, Jørn, Baliakas, Panagotis, Hovland, Randi, Andresen, Vibeke, Seternes, Ole Morten, Tvedt, Tor Henrik Anderson, Aghaeepour, Nima, Gavasso, Sonia, Porkka, Kimmo, Jonassen, Inge, Fløisand, Yngvar, Enserink, Jorrit, Blaser, Nello, Gjertsen, Bjørn Tore
Published in Nature communications (30.03.2023)
Published in Nature communications (30.03.2023)
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Journal Article
Development of a high dimensional imaging mass cytometry panel to investigate spatial organization of tissue microenvironment in formalin-fixed archival clinical tissues
Tornaas, Stian, Kleftogiannis, Dimitrios, Fromreide, Siren, Smeland, Hilde Ytre-Hauge, Aarstad, Hans Jørgen, Vintermyr, Olav Karsten, Akslen, Lars Andreas, Costea, Daniela Elena, Dongre, Harsh Nitin
Published in Heliyon (30.05.2024)
Published in Heliyon (30.05.2024)
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Journal Article
Identification of single nucleotide variants using position-specific error estimation in deep sequencing data
Kleftogiannis, Dimitrios, Punta, Marco, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q, Gasi Tandefelt, Delila, Conteduca, Vincenza, Wetterskog, Daniel, Attard, Gerhardt, Lise, Stefano
Published in BMC medical genomics (02.08.2019)
Published in BMC medical genomics (02.08.2019)
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Journal Article
Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions
Kleftogiannis, Dimitrios, Wong, Limsoon, Archer, John A C, Kalnis, Panos
Published in Bioinformatics (15.07.2015)
Published in Bioinformatics (15.07.2015)
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Journal Article
Circulating Tumour DNA Sequencing Identifies a Genetic Resistance-Gap in Colorectal Cancers with Acquired Resistance to EGFR-Antibodies and Chemotherapy
Knebel, Franciele H, Barber, Louise J, Newey, Alice, Kleftogiannis, Dimitrios, Woolston, Andrew, Griffiths, Beatrice, Fenwick, Kerry, Bettoni, Fabiana, Ribeiro, Maurício Fernando Silva Almeida, da Fonseca, Leonardo, Costa, Frederico, Capareli, Fernanda Cunha, Hoff, Paulo M, Sabbaga, Jorge, Camargo, Anamaria A, Gerlinger, Marco
Published in Cancers (11.12.2020)
Published in Cancers (11.12.2020)
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Journal Article
DEEP: a general computational framework for predicting enhancers
Kleftogiannis, Dimitrios, Kalnis, Panos, Bajic, Vladimir B
Published in Nucleic acids research (01.01.2015)
Published in Nucleic acids research (01.01.2015)
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Journal Article
Progress and challenges in bioinformatics approaches for enhancer identification
Kleftogiannis, Dimitrios, Kalnis, Panos, Bajic, Vladimir B
Published in Briefings in bioinformatics (01.11.2016)
Published in Briefings in bioinformatics (01.11.2016)
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Journal Article
Genome-wide plasma DNA methylation features of metastatic prostate cancer
Wu, Anjui, Cremaschi, Paolo, Wetterskog, Daniel, Conteduca, Vincenza, Franceschini, Gian Marco, Kleftogiannis, Dimitrios, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q, Benelli, Matteo, Salvi, Samanta, Gurioli, Giorgia, Feber, Andrew, Pereira, Mariana Buongermino, Wingate, Anna Maria, Gonzalez-Billalebeitia, Enrique, De Giorgi, Ugo, Demichelis, Francesca, Lise, Stefano, Attard, Gerhardt
Published in The Journal of clinical investigation (01.04.2020)
Published in The Journal of clinical investigation (01.04.2020)
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Journal Article
Full Spectrum 40-Parameter Single-Tube Flow Cytometry Analysis for Longitudinal Immunophenotyping and Tracing of Clonal Heterogeneity in AML
Van Der Meer, Nisha K., Minh, Duy le, Pereira-Martins, Diego, Kleftogiannis, Dimitrios, Wierenga, Albertus T.J., Meijer, Kees, Mulder, Andre B., Huls, Gerwin A., Schuringa, Jan Jacob
Published in Blood (15.11.2022)
Published in Blood (15.11.2022)
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Journal Article
YamiPred: A Novel Evolutionary Method for Predicting Pre-miRNAs and Selecting Relevant Features
Kleftogiannis, Dimitrios, Theofilatos, Konstantinos, Likothanassis, Spiros, Mavroudi, Seferina
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2015)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.09.2015)
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Journal Article
Ultra-Sensitive Mutation Detection and Genome-Wide DNA Copy Number Reconstruction by Error-Corrected Circulating Tumor DNA Sequencing
Mansukhani, Sonia, Barber, Louise J, Kleftogiannis, Dimitrios, Moorcraft, Sing Yu, Davidson, Michael, Woolston, Andrew, Proszek, Paula Zuzanna, Griffiths, Beatrice, Fenwick, Kerry, Herman, Bram, Matthews, Nik, O'Leary, Ben, Hulkki, Sanna, Gonzalez De Castro, David, Patel, Anisha, Wotherspoon, Andrew, Okachi, Aleruchi, Rana, Isma, Begum, Ruwaida, Davies, Matthew N, Powles, Thomas, von Loga, Katharina, Hubank, Michael, Turner, Nick, Watkins, David, Chau, Ian, Cunningham, David, Lise, Stefano, Starling, Naureen, Gerlinger, Marco
Published in Clinical chemistry (Baltimore, Md.) (01.11.2018)
Published in Clinical chemistry (Baltimore, Md.) (01.11.2018)
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Journal Article
In Vivo Modeling of Chemoresistant Neuroblastoma Provides New Insights into Chemorefractory Disease and Metastasis
Yogev, Orli, Almeida, Gilberto S, Barker, Karen T, George, Sally L, Kwok, Colin, Campbell, James, Zarowiecki, Magdalena, Kleftogiannis, Dimitrios, Smith, Laura M, Hallsworth, Albert, Berry, Philip, Möcklinghoff, Till, Webber, Hannah T, Danielson, Laura S, Buttery, Bliss, Calton, Elizabeth A, da Costa, Barbara M, Poon, Evon, Jamin, Yann, Lise, Stefano, Veal, Gareth J, Sebire, Neil, Robinson, Simon P, Anderson, John, Chesler, Louis
Published in Cancer research (Chicago, Ill.) (15.10.2019)
Published in Cancer research (Chicago, Ill.) (15.10.2019)
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Journal Article