Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA
Vaisvila, Romualdas, Ponnaluri, V.K. Chaithanya, Sun, Zhiyi, Langhorst, Bradley W., Saleh, Lana, Guan, Shengxi, Dai, Nan, Campbell, Matthew A., Sexton, Brittany S., Marks, Katherine, Samaranayake, Mala, Samuelson, James C., Church, Heidi E., Tamanaha, Esta, Corrêa, Ivan R., Pradhan, Sriharsa, Dimalanta, Eileen T., Evans, Thomas C., Williams, Louise, Davis, Theodore B.
Published in Genome research (01.07.2021)
Published in Genome research (01.07.2021)
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Journal Article
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA
Feehery, George R, Yigit, Erbay, Oyola, Samuel O, Langhorst, Bradley W, Schmidt, Victor T, Stewart, Fiona J, Dimalanta, Eileen T, Amaral-Zettler, Linda A, Davis, Theodore, Quail, Michael A, Pradhan, Sriharsa
Published in PloS one (28.10.2013)
Published in PloS one (28.10.2013)
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PacBio-Based Mitochondrial Genome Assembly of Leucaena trichandra (Leguminosae) and an Intrageneric Assessment of Mitochondrial RNA Editing
Kovar, Lynsey, Nageswara-Rao, Madhugiri, Ortega-Rodriguez, Sealtiel, Dugas, Diana V, Straub, Shannon, Cronn, Richard, Strickler, Susan R, Hughes, Colin E, Hanley, Kathryn A, Rodriguez, Deyra N, Langhorst, Bradley W, Dimalanta, Eileen T, Bailey, C Donovan
Published in Genome biology and evolution (01.09.2018)
Published in Genome biology and evolution (01.09.2018)
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Single-Molecule Approach to Bacterial Genomic Comparisons via Optical Mapping
SHIGUO ZHOU, KILE, Andrew, FORREST, Daniel, DIMALANTA, Eileen T, LAMERS, Casey, BURLAND, Valerie, BLATTNER, Frederick R, SCHWARTZ, David C, BECHNER, Michael, PLACE, Michael, KVIKSTAD, Erika, WEN DENG, JUN WEI, SEVERIN, Jessica, RUNNHEIM, Rodney, CHURAS, Christopher
Published in Journal of Bacteriology (01.11.2004)
Published in Journal of Bacteriology (01.11.2004)
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Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development
Malkani, Sherina, Chin, Christopher R., Cekanaviciute, Egle, Mortreux, Marie, Okinula, Hazeem, Tarbier, Marcel, Schreurs, Ann-Sofie, Shirazi-Fard, Yasaman, Tahimic, Candice G.T., Rodriguez, Deyra N., Sexton, Brittany S., Butler, Daniel, Verma, Akanksha, Bezdan, Daniela, Durmaz, Ceyda, MacKay, Matthew, Melnick, Ari, Meydan, Cem, Li, Sheng, Garrett-Bakelman, Francine, Fromm, Bastian, Afshinnekoo, Ebrahim, Langhorst, Brad W., Dimalanta, Eileen T., Cheng-Campbell, Margareth, Blaber, Elizabeth, Schisler, Jonathan C., Vanderburg, Charles, Friedländer, Marc R., McDonald, J. Tyson, Costes, Sylvain V., Rutkove, Seward, Grabham, Peter, Mason, Christopher E., Beheshti, Afshin
Published in Cell reports (Cambridge) (08.12.2020)
Published in Cell reports (Cambridge) (08.12.2020)
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Abstract 3998: Sequencing the B-cell and T-cell repertoire
Stewart, Fiona J., Karaca, Mehmet, Adams, Kris, Clouser, Chris, Patel, Bonny, Timberlake, Sonia, Donahue, William, Apone, Lynne, Russello, Salvatore, Dimalanta, Eileen T., Davis, Theodore B., Vigneault, Francois
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Abstract 3628: Improving sequencing quality of libraries prepared from FFPE DNA
liu, pingfang, Chen, Lixin, Ettwiller, Laurence, Sumner, Christine, Stewart, Fiona J., Dimalanta, Eileen T., Davis, Theodore B., Thomas, Evans C.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Journal Article
Comprehensive nucleosome mapping of the human genome in cancer progression
Druliner, Brooke R, Vera, Daniel, Johnson, Ruth, Ruan, Xiaoyang, Apone, Lynn M, Dimalanta, Eileen T, Stewart, Fiona J, Boardman, Lisa, Dennis, Jonathan H
Published in Oncotarget (22.03.2016)
Published in Oncotarget (22.03.2016)
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DNA dynamics in a microchannel
Jendrejack, Richard M, Dimalanta, Eileen T, Schwartz, David C, Graham, Michael D, de Pablo, Juan J
Published in Physical review letters (18.07.2003)
Published in Physical review letters (18.07.2003)
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A Robust, Streamlined, Enzyme-based DNA Library Preparation Method Amenable to a Wide Range of DNA Inputs
Hoppers, Amanda, Apone, Lynne, Panchapakesa, Vaishnavi, McKay, Karen, Liu, Pingfang, Song, Chen, Sumner, Christine, Rozzi, Christine, Arn, Melissa, Sanford, Jonathan, Langhorst, Bradley W, Shtatland, Timur, Stewart, Fiona J, Munafo, Daniela, Dimalanta, Eileen T, Davis, Theodore B
Published in Journal of biomolecular techniques (01.12.2019)
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Published in Journal of biomolecular techniques (01.12.2019)
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A Microfluidic System for Large DNA Molecule Arrays
Dimalanta, Eileen T, Lim, Alex, Runnheim, Rod, Lamers, Casey, Churas, Chris, Forrest, Daniel K, de Pablo, Juan J, Graham, Michael D, Coppersmith, Susan N, Goldstein, Steve, Schwartz, David C
Published in Analytical chemistry (Washington) (15.09.2004)
Published in Analytical chemistry (Washington) (15.09.2004)
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Journal Article
A Microbiome DNA Enrichment Method for Next-Generation Sequencing Sample Preparation
Yigit, Erbay, Feehery, George R, Langhorst, Bradley W, Stewart, Fiona J, Dimalanta, Eileen T, Pradhan, Sriharsa, Slatko, Barton, Gardner, Andrew F, McFarland, James, Sumner, Christine, Davis, Theodore B
Published in Current protocols in molecular biology (Print) (01.07.2016)
Published in Current protocols in molecular biology (Print) (01.07.2016)
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Selective Depletion of Abundant RNAs to Enable Transcriptome Analysis of Low-Input and Highly Degraded Human RNA
Munafó, Daniela B, Langhorst, Bradley W, Chater, Christine L, Sumner, Christine J, Rodríguez, Deyra N, Russello, Salvatore, Gardner, Andrew F, Slatko, Barton E, Stewart, Fiona J, Sinicropi, Dominick, Morlan, John, Qu, Kunbin, Dimalanta, Eileen T, Davis, Theodore B
Published in Current protocols in molecular biology (Print) (01.01.2016)
Published in Current protocols in molecular biology (Print) (01.01.2016)
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Journal Article
A Whole-Genome Shotgun Optical Map of Yersinia pestis Strain KIM
SHIGUO ZHOU, WEN DENG, KVIKSTAD, Erika, BECHNER, Michael, YEN, Galex, GARIC-STANKOVIC, Ana, SEVERIN, Jessica, FORREST, Dan, RUNNHEIM, Rod, CHURAS, Chris, LAMERS, Casey, PERNA, Nicole T, ANANTHARAMAN, Thomas S, BURLAND, Valerie, BLATTNER, Frederick R, MISHRA, Bhubaneswar, SCHWARTZ, David C, LIM, Alex, DIMALANTA, Eileen T, JUN WANG, TIAN WU, TAO CHUNHONG, CREIGHTON, Robert, KILE, Andrew
Published in Applied and Environmental Microbiology (01.12.2002)
Published in Applied and Environmental Microbiology (01.12.2002)
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Journal Article
Comparative analysis of strand-specific RNA sequencing approaches
Munafo, Daniela, Liu, Ping, Sumner, Christine, Yigit, Erbay, Merrill, Landon, Apone, Lynne, Langhorst, Brad, Stewart, Fiona, Dimalanta, Eileen T, Davis, Theodore
Published in BMC proceedings (01.10.2012)
Published in BMC proceedings (01.10.2012)
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Journal Article
Polymorphism discovery in high-throughput resequenced microarray-enriched human genomic loci
Antipova, Alena A, Sokolsky, Tanya D, Clouser, Christopher R, Dimalanta, Eileen T, Hendrickson, Cynthia L, Kosnopo, Cisilya, Lee, Clarence C, Ranade, Swati S, Zhang, Lei, Blanchard, Alan P, McKernan, Kevin J
Published in Journal of biomolecular techniques (01.12.2009)
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Published in Journal of biomolecular techniques (01.12.2009)
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A shotgun optical map of the entire Plasmodium falciparum genome
Schwartz, David C, Lai, Zhongwu, Jing, Junping, Aston, Christopher, Clarke, Virginia, Apodaca, Jennifer, Dimalanta, Eileen T, Carucci, Daniel J, Gardner, Malcolm J, Mishra, Bud, Anantharaman, Thomas S, Paxia, Salvatore, Hoffman, Stephen L, Venter, J. Craig, Huff, Edward J
Published in Nature genetics (01.11.1999)
Published in Nature genetics (01.11.1999)
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Journal Article
A fast solution to NGS library preparation with low nanogram DNA input
Liu, Pingfang, Lohman, Gregory JS, Cantor, Eric, Langhorst, Bradley W, Yigit, Erbay, Apone, Lynne M, Munafo, Daniela B, Sumner, Christine, Stewart, Fiona J, Evans, Thomas C, Nichols, Nicole M, Dimalanta, Eileen T, Davis, Theodore B
Published in BMC proceedings (01.10.2012)
Published in BMC proceedings (01.10.2012)
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Abstract 4046: Immune repertoire sequencing reveals tumor microenvironment and tracks clonally expanded B cell and T cell in blood
Song, Chen, Liu, Pingfang, Barry, Andrew, Langhorst, Bradley W., Stewart, Fiona J., Russello, Salvatore, Davis, Theodore B., Dimalanta, Eileen T.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
EM-seq: Detection of DNA Methylation at Single Base Resolution from Picograms of DNA
Vaisvila, Romualdas, V K Chaithanya Ponnaluri, Sun, Zhiyi, Langhorst, Bradley W, Saleh, Lana, Guan, Shengxi, Dai, Nan, Campbell, Matthew A, Sexton, Brittany S, Marks, Katherine, Samaranayake, Mala, Samuelson, James C, Church, Heidi E, Tamanaha, Esta, Corrêa, Ivan R, Pradhan, Sriharsa, Dimalanta, Eileen T, Evans, Thomas C, Williams, Louise, Davis, Theodore B
Published in bioRxiv (16.05.2020)
Published in bioRxiv (16.05.2020)
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