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Prediction of prognostic signatures in triple-negative breast cancer based on the differential expression analysis via NanoString nCounter immune panel
Lim, Gyeong Back, Kim, Young-Ae, Seo, Jeong-Han, Lee, Hee Jin, Gong, Gyungyub, Park, Sung Hee
Published in BMC cancer (02.11.2020)
Published in BMC cancer (02.11.2020)
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Differential Expression Analysis of Olfactory Genes Based on a Combination of Sequencing Platforms and Behavioral Investigations in Aphidius gifuensis
Fan, Jia, Zhang, Qian, Xu, Qingxuan, Xue, Wenxin, Han, Zongli, Sun, Jingrui, Chen, Julian
Published in Frontiers in physiology (27.11.2018)
Published in Frontiers in physiology (27.11.2018)
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iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects
Liu, Yunqing, Zhao, Jiayi, Adams, Taylor S., Wang, Ningya, Schupp, Jonas C., Wu, Weimiao, McDonough, John E., Chupp, Geoffrey L., Kaminski, Naftali, Wang, Zuoheng, Yan, Xiting
Published in BMC bioinformatics (22.08.2023)
Published in BMC bioinformatics (22.08.2023)
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Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet
Hoffman, Gabriel E, Lee, Donghoon, Bendl, Jaroslav, Prashant, N M, Hong, Aram, Casey, Clara, Alvia, Marcela, Shao, Zhiping, Argyriou, Stathis, Therrien, Karen, Venkatesh, Sanan, Voloudakis, Georgios, Haroutunian, Vahram, Fullard, John F, Roussos, Panos
Published in bioRxiv (20.11.2024)
Published in bioRxiv (20.11.2024)
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Identifying Relevant Covariates in RNA-seq Analysis by Pseudo-Variable Augmentation
Nguyen, Yet, Nettleton, Dan
Published in Journal of agricultural, biological, and environmental statistics (02.11.2024)
Published in Journal of agricultural, biological, and environmental statistics (02.11.2024)
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Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet
Hoffman, Gabriel E, Lee, Donghoon, Bendl, Jaroslav, Fnu, Prashant, Hong, Aram, Casey, Clara, Alvia, Marcela, Shao, Zhiping, Argyriou, Stathis, Therrien, Karen, Venkatesh, Sanan, Voloudakis, Georgios, Haroutunian, Vahram, Fullard, John F, Roussos, Panos
Published in Research square (02.05.2023)
Published in Research square (02.05.2023)
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Identification of Immune-Related Genes as Biomarkers for Uremia
Lyu, Dongning, He, Guangyu, Zhou, Kan, Xu, Jin, Zeng, Haifei, Li, Tongyu, Tang, Ningbo
Published in International journal of general medicine (31.12.2023)
Published in International journal of general medicine (31.12.2023)
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scViewer: An Interactive Single-Cell Gene Expression Visualization Tool
Patil, Abhijeet R., Kumar, Gaurav, Zhou, Huanyu, Warren, Liling
Published in Cells (Basel, Switzerland) (27.05.2023)
Published in Cells (Basel, Switzerland) (27.05.2023)
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Reduced TREM2 activation in microglia of patients with Alzheimer's disease
Okuzono, Yuumi, Sakuma, Hiroyuki, Miyakawa, Shuuichi, Ifuku, Masataka, Lee, Jonghun, Das, Debashree, Banerjee, Antara, Zhao, Yang, Yamamoto, Koji, Ando, Tatsuya, Sato, Shuji
Published in FEBS open bio (01.11.2021)
Published in FEBS open bio (01.11.2021)
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PLNseq: a multivariate Poisson lognormal distribution for high-throughput matched RNA-sequencing read count data
Zhang, Hong, Xu, Jinfeng, Jiang, Ning, Hu, Xiaohua, Luo, Zewei
Published in Statistics in medicine (30.04.2015)
Published in Statistics in medicine (30.04.2015)
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Individual Level Differential Expression Analysis for Single Cell RNA-seq data
Zhang, Mengqi, Liu, Si, Miao, Zhen, Han, Fang, Gottardo, Raphael, Sun, Wei
Published in bioRxiv (10.05.2021)
Published in bioRxiv (10.05.2021)
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SURFR: A Real-Time Platform for Non-Coding RNA Fragmentation Analysis Using Wavelets
Kasukurthi, Mohan Vamsi, Houserova, Dominika, Huang, Yulong, Li, Shengyu, Li, Dongqi, Lin, Jingwei, Yang, Guanhuan, Tan, Shaobo, Bourrie, David, Ma, Bin, Borchert, Glen M., Huang, Jingshan
Published in 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (09.12.2021)
Published in 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (09.12.2021)
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Mass Spectrometry Applications
Cunsolo, Vincenzo, Foti, Salvatore, Ner‐Kluza, Joanna, Drabik, Anna, Silberring, Jerzy, Muccilli, Vera, Saletti, Rosaria, Pawlak, Katarzyna, Harwood, Emma, Yu, Fang, Ciborowski, Pawel, Anczkiewicz, Robert, Altweg, Kathrin, Spoto, Giuseppe, Pawlaczyk, Aleksandra, Szynkowska, Małgorzata Iwona, Smoluch, Marek, Kwiatkowska, Dorota
Published in Mass Spectrometry (2019)
Published in Mass Spectrometry (2019)
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The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies
Pratlong, Marine, Haguenauer, Anne, Chabrol, Olivier, Klopp, Christophe, Pontarotti, Pierre, Aurelle, Didier
Published in Molecular ecology resources 5 (15), 1205 - 1215. (2015) (2015)
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Published in Molecular ecology resources 5 (15), 1205 - 1215. (2015) (2015)
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The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies
Pratlong, Marine, Haguenauer, Anne, Chabrol, Olivier, Klopp, Christophe, Pontarotti, Pierre, Aurelle, Didier
Published in Molecular ecology resources 5 (15), 1205 - 1215. (2015) (2015)
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Published in Molecular ecology resources 5 (15), 1205 - 1215. (2015) (2015)
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NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S., Hafler, David A., Kellis, Manolis, Kulminski, Alexander M.
Published in Communications Biology (26.05.2021)
Published in Communications Biology (26.05.2021)
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