Within-host evolution of Helicobacter pylori shaped by niche-specific adaptation, intragastric migrations and selective sweeps
Ailloud, Florent, Didelot, Xavier, Woltemate, Sabrina, Pfaffinger, Gudrun, Overmann, Jörg, Bader, Ruth Christiane, Schulz, Christian, Malfertheiner, Peter, Suerbaum, Sebastian
Published in Nature communications (22.05.2019)
Published in Nature communications (22.05.2019)
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Journal Article
Bayesian inference of ancestral dates on bacterial phylogenetic trees
Didelot, Xavier, Croucher, Nicholas J, Bentley, Stephen D, Harris, Simon R, Wilson, Daniel J
Published in Nucleic acids research (14.12.2018)
Published in Nucleic acids research (14.12.2018)
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Journal Article
Inference of person-to-person transmission of COVID-19 reveals hidden super-spreading events during the early outbreak phase
Wang, Liang, Didelot, Xavier, Yang, Jing, Wong, Gary, Shi, Yi, Liu, Wenjun, Gao, George F., Bi, Yuhai
Published in Nature communications (06.10.2020)
Published in Nature communications (06.10.2020)
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Journal Article
The global distribution and spread of the mobilized colistin resistance gene mcr-1
Wang, Ruobing, van Dorp, Lucy, Shaw, Liam P., Bradley, Phelim, Wang, Qi, Wang, Xiaojuan, Jin, Longyang, Zhang, Qing, Liu, Yuqing, Rieux, Adrien, Dorai-Schneiders, Thamarai, Weinert, Lucy Anne, Iqbal, Zamin, Didelot, Xavier, Wang, Hui, Balloux, Francois
Published in Nature communications (21.03.2018)
Published in Nature communications (21.03.2018)
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Journal Article
Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data
Jombart, Thibaut, Cori, Anne, Didelot, Xavier, Cauchemez, Simon, Fraser, Christophe, Ferguson, Neil
Published in PLoS computational biology (01.01.2014)
Published in PLoS computational biology (01.01.2014)
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Journal Article
outbreaker2: a modular platform for outbreak reconstruction
Campbell, Finlay, Didelot, Xavier, Fitzjohn, Rich, Ferguson, Neil, Cori, Anne, Jombart, Thibaut
Published in BMC bioinformatics (22.10.2018)
Published in BMC bioinformatics (22.10.2018)
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Journal Article
Genomic signatures of pre-resistance in Mycobacterium tuberculosis
Torres Ortiz, Arturo, Coronel, Jorge, Vidal, Julia Rios, Bonilla, Cesar, Moore, David A. J., Gilman, Robert H., Balloux, Francois, Kon, Onn Min, Didelot, Xavier, Grandjean, Louis
Published in Nature communications (15.12.2021)
Published in Nature communications (15.12.2021)
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Journal Article
Inference of homologous recombination in bacteria using whole-genome sequences
Didelot, Xavier, Lawson, Daniel, Darling, Aaron, Falush, Daniel
Published in Genetics (Austin) (01.12.2010)
Published in Genetics (Austin) (01.12.2010)
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Journal Article
Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy
Knight, Daniel R, Imwattana, Korakrit, Kullin, Brian, Guerrero-Araya, Enzo, Paredes-Sabja, Daniel, Didelot, Xavier, Dingle, Kate E, Eyre, David W, Rodríguez, César, Riley, Thomas V
Published in eLife (11.06.2021)
Published in eLife (11.06.2021)
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Journal Article
Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year
Kendall, Michelle, Tsallis, Daphne, Wymant, Chris, Di Francia, Andrea, Balogun, Yakubu, Didelot, Xavier, Ferretti, Luca, Fraser, Christophe
Published in Nature communications (22.02.2023)
Published in Nature communications (22.02.2023)
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