Space-efficient computation of k-mer dictionaries for large values of k
Díaz-Domínguez, Diego, Leinonen, Miika, Salmela, Leena
Published in Algorithms for molecular biology (05.04.2024)
Published in Algorithms for molecular biology (05.04.2024)
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Journal Article
Fine Mapping Using Whole-Genome Sequencing Confirms Anti-Müllerian Hormone as a Major Gene for Sex Determination in Farmed Nile Tilapia ( Oreochromis niloticus L.)
Cáceres, Giovanna, López, María E, Cádiz, María I, Yoshida, Grazyella M, Jedlicki, Ana, Palma-Véjares, Ricardo, Travisany, Dante, Díaz-Domínguez, Diego, Maass, Alejandro, Lhorente, Jean P, Soto, Jose, Salas, Diego, Yáñez, José M
Published in G3 : genes - genomes - genetics (01.10.2019)
Published in G3 : genes - genomes - genetics (01.10.2019)
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Journal Article
A grammar compressor for collections of reads with applications to the construction of the BWT
Diaz-Dominguez, Diego, Navarro, Gonzalo
Published in 2021 Data Compression Conference (DCC) (01.03.2021)
Published in 2021 Data Compression Conference (DCC) (01.03.2021)
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Conference Proceeding
Whole genome re-sequencing reveals recent signatures of selection in three strains of farmed Nile tilapia (Oreochromis niloticus)
Cádiz, María I, López, María E, Díaz-Domínguez, Diego, Cáceres, Giovanna, Yoshida, Grazyella M, Gomez-Uchida, Daniel, Yáñez, José M
Published in Scientific reports (13.07.2020)
Published in Scientific reports (13.07.2020)
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Journal Article
Detection of selection signatures in the genome of a farmed population of anadromous rainbow trout (Oncorhynchus mykiss)
Cádiz, María I., López, María E., Díaz-Domínguez, Diego, Cáceres, Giovanna, Marin-Nahuelpi, Rodrigo, Gomez-Uchida, Daniel, Canales-Aguirre, Cristian B., Orozco-terWengel, Pablo, Yáñez, José M.
Published in Genomics (San Diego, Calif.) (01.09.2021)
Published in Genomics (San Diego, Calif.) (01.09.2021)
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Journal Article
An Index for Sequencing Reads Based on The Colored de Bruijn Graph
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Paper
Journal Article
Whole genome re-sequencing reveals recent signatures of selection in three strains of farmed Nile tilapia (Oreochromis niloticus)
Maria Ignacia Cadiz, Lopez, Maria Eugenia, Diaz-Dominguez, Diego, Caceres, Giovanna, Yoshida, Grazyella, Gomez-Uchida, Daniel, Yanez, Jose
Published in bioRxiv (31.10.2019)
Published in bioRxiv (31.10.2019)
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Paper
High-throughput single nucleotide polymorphism (SNP) discovery and validation through whole-genome resequencing of hundreds of individuals in Nile tilapia (Oreochromis niloticus)
Yanez, Jose Manuel, Yoshida, Grazyella, Barria, Agustin, Palma-Vejares, Ricardo, Travisany, Dante, Diaz-Dominguez, Diego, Caceres, Giovanna, Maria Ignacia Cadiz, Lopez, Maria Eugenia, Lhorente, Jean Paul, Jedlicki, Ana, Soto, Jose, Salas, Diego, Maass, Alejandro
Published in bioRxiv (31.03.2019)
Published in bioRxiv (31.03.2019)
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Paper
Fine mapping using whole-genome sequencing confirms anti Mullerian hormone as a major gene for sex determination in farmed Nile tilapia (Oreochromis niloticus L.)
Caceres, Giovanna, Lopez, Maria Eugenia, Maria Ignacia Cadiz, Yoshida, Grazyella, Jedlicki, Ana, Palma-Vejares, Ricardo, Travisany, Dante, Diaz-Dominguez, Diego, Maass, Alejandro, Jean-Paul Lhorente, Soto, Jorge, Salas, Diego, Yanez, Jose Manuel
Published in bioRxiv (09.03.2019)
Published in bioRxiv (09.03.2019)
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Paper
Efficient Construction of the BWT for Repetitive Text Using String Compression
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Journal Article
Computing all-vs-all MEMs in run-length encoded collections of HiFi reads
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Journal Article
Assembling Omnitigs using Hidden-Order de Bruijn Graphs
Díaz-Domínguez, Diego, Belazzougui, Djamal, Gagie, Travis, Mäkinen, Veli, Navarro, Gonzalo, Puglisi, Simon J
Published in arXiv.org (14.05.2018)
Published in arXiv.org (14.05.2018)
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Journal Article