GENCODE 2021
Frankish, Adam, Diekhans, Mark, Jungreis, Irwin, Lagarde, Julien, Loveland, Jane E, Mudge, Jonathan M, Sisu, Cristina, Wright, James C, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Boix, Carles, Carbonell Sala, Silvia, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Howe, Kevin L, Hunt, Toby, Izuogu, Osagie G, Johnson, Rory, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Riera, Ferriol Calvet, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Wolf, Maxim Y, Xu, Jinuri, Yang, Yucheng T, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Tress, Michael L, Flicek, Paul
Published in Nucleic Acids Research (08.01.2021)
Published in Nucleic Acids Research (08.01.2021)
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Journal Article
Web Resource
APPRIS: selecting functionally important isoforms
Rodriguez, Jose Manuel, Pozo, Fernando, Cerdán-Vélez, Daniel, Di Domenico, Tomás, Vázquez, Jesús, Tress, Michael L
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
MobiDB: a comprehensive database of intrinsic protein disorder annotations
DI DOMENICO, Tomás, WALSH, Ian, MARTIN, Alberto J. M, TOSATTO, Silvio C. E
Published in Bioinformatics (01.08.2012)
Published in Bioinformatics (01.08.2012)
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Journal Article
vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer
Perales-Patón, Javier, Di Domenico, Tomás, Fustero-Torre, Coral, Piñeiro-Yáñez, Elena, Carretero-Puche, Carlos, Tejero, Héctor, Valencia, Alfonso, Gómez-López, Gonzalo, Al-Shahrour, Fátima
Published in Bioinformatics (01.11.2019)
Published in Bioinformatics (01.11.2019)
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Journal Article
The Profile and Dynamics of RNA Modifications in Animals
van Delft, Pieter, Akay, Alper, Huber, Sabrina M., Bueschl, Christoph, Rudolph, Konrad L. M., Di Domenico, Tomás, Schuhmacher, Rainer, Miska, Eric A., Balasubramanian, Shankar
Published in Chembiochem : a European journal of chemical biology (01.06.2017)
Published in Chembiochem : a European journal of chemical biology (01.06.2017)
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Journal Article
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins
Potenza, Emilio, Domenico, Tomás Di, Walsh, Ian, Tosatto, Silvio C.E.
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
PANADA: protein association network annotation, determination and analysis
Martin, Alberto J M, Walsh, Ian, Domenico, Tomás Di, Mičetić, Ivan, Tosatto, Silvio C E
Published in PloS one (12.11.2013)
Published in PloS one (12.11.2013)
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Journal Article
GENCODE reference annotation for the human and mouse genomes
Frankish, Adam, Diekhans, Mark, Ferreira, Anne-Maud, Johnson, Rory, Jungreis, Irwin, Loveland, Jane, Mudge, Jonathan M, Sisu, Cristina, Wright, James, Armstrong, Joel, Barnes, If, Berry, Andrew, Bignell, Alexandra, Carbonell Sala, Silvia, Chrast, Jacqueline, Cunningham, Fiona, Di Domenico, Tomás, Donaldson, Sarah, Fiddes, Ian T, García Girón, Carlos, Gonzalez, Jose Manuel, Grego, Tiago, Hardy, Matthew, Hourlier, Thibaut, Hunt, Toby, Izuogu, Osagie G, Lagarde, Julien, Martin, Fergal J, Martínez, Laura, Mohanan, Shamika, Muir, Paul, Navarro, Fabio C P, Parker, Anne, Pei, Baikang, Pozo, Fernando, Ruffier, Magali, Schmitt, Bianca M, Stapleton, Eloise, Suner, Marie-Marthe, Sycheva, Irina, Uszczynska-Ratajczak, Barbara, Xu, Jinuri, Yates, Andrew, Zerbino, Daniel, Zhang, Yan, Aken, Bronwen, Choudhary, Jyoti S, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J P, Kellis, Manolis, Paten, Benedict, Reymond, Alexandre, Tress, Michael L, Flicek, Paul
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins
Potenza, Emilio, Di Domenico, Tomás, Walsh, Ian, Tosatto, Silvio C E
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Journal Article
APPRIS 2017: principal isoforms for multiple gene sets
Rodriguez, Jose Manuel, Rodriguez-Rivas, Juan, Di Domenico, Tomás, Vázquez, Jesús, Valencia, Alfonso, Tress, Michael L
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Publication
ESpritz: accurate and fast prediction of protein disorder
Walsh, Ian, Martin, Alberto J. M., Di Domenico, Tomàs, Tosatto, Silvio C. E.
Published in Bioinformatics (15.02.2012)
Published in Bioinformatics (15.02.2012)
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Journal Article
Beyondcell: targeting cancer therapeutic heterogeneity in single-cell RNA-seq data
Fustero-Torre, Coral, Jiménez-Santos, María José, García-Martín, Santiago, Carretero-Puche, Carlos, García-Jimeno, Luis, Ivanchuk, Vadym, Di Domenico, Tomás, Gómez-López, Gonzalo, Al-Shahrour, Fátima
Published in Genome medicine (16.12.2021)
Published in Genome medicine (16.12.2021)
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Journal Article
RepeatsDB: a database of tandem repeat protein structures
Di Domenico, Tomás, Potenza, Emilio, Walsh, Ian, Parra, R Gonzalo, Giollo, Manuel, Minervini, Giovanni, Piovesan, Damiano, Ihsan, Awais, Ferrari, Carlo, Kajava, Andrey V, Tosatto, Silvio C E
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
Assessing the functional relevance of splice isoforms
Pozo, Fernando, Martinez-Gomez, Laura, Walsh, Thomas A, Rodriguez, José Manuel, Di Domenico, Tomas, Abascal, Federico, Vazquez, Jesús, Tress, Michael L
Published in NAR genomics and bioinformatics (01.06.2021)
Published in NAR genomics and bioinformatics (01.06.2021)
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