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Chromosome Catastrophes Involve Replication Mechanisms Generating Complex Genomic Rearrangements
Liu, Pengfei, Erez, Ayelet, Nagamani, Sandesh C. Sreenath, Dhar, Shweta U., Kołodziejska, Katarzyna E., Dharmadhikari, Avinash V., Cooper, M. Lance, Wiszniewska, Joanna, Zhang, Feng, Withers, Marjorie A., Bacino, Carlos A., Campos-Acevedo, Luis Daniel, Delgado, Mauricio R., Freedenberg, Debra, Garnica, Adolfo, Grebe, Theresa A., Hernández-Almaguer, Dolores, Immken, LaDonna, Lalani, Seema R., McLean, Scott D., Northrup, Hope, Scaglia, Fernando, Strathearn, Lane, Trapane, Pamela, Kang, Sung-Hae L., Patel, Ankita, Cheung, Sau Wai, Hastings, P.J., Stankiewicz, Paweł, Lupski, James R., Bi, Weimin
Published in Cell (16.09.2011)
Published in Cell (16.09.2011)
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Clinical exome sequencing for fetuses with ultrasound abnormalities and a suspected Mendelian disorder
Normand, Elizabeth A., Braxton, Alicia, Nassef, Salma, Ward, Patricia A., Vetrini, Francesco, He, Weimin, Patel, Vipulkumar, Qu, Chunjing, Westerfield, Lauren E., Stover, Samantha, Dharmadhikari, Avinash V., Muzny, Donna M., Gibbs, Richard A., Dai, Hongzheng, Meng, Linyan, Wang, Xia, Xiao, Rui, Liu, Pengfei, Bi, Weimin, Xia, Fan, Walkiewicz, Magdalena, Van den Veyver, Ignatia B., Eng, Christine M., Yang, Yaping
Published in Genome medicine (28.09.2018)
Published in Genome medicine (28.09.2018)
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Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder
Szafranski, Przemyslaw, Dharmadhikari, Avinash V., Brosens, Erwin, Gurha, Priyatansh, Kołodziejska, Katarzyna E., Zhishuo, Ou, Dittwald, Piotr, Majewski, Tadeusz, Mohan, K. Naga, Chen, Bo, Person, Richard E., Tibboel, Dick, de Klein, Annelies, Pinner, Jason, Chopra, Maya, Malcolm, Girvan, Peters, Gregory, Arbuckle, Susan, Guiang, Sixto F., Hustead, Virginia A., Jessurun, Jose, Hirsch, Russel, Witte, David P., Maystadt, Isabelle, Sebire, Neil, Fisher, Richard, Langston, Claire, Sen, Partha, Stankiewicz, Paweł
Published in Genome research (01.01.2013)
Published in Genome research (01.01.2013)
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Copy number variant and runs of homozygosity detection by microarrays enabled more precise molecular diagnoses in 11,020 clinical exome cases
Dharmadhikari, Avinash V., Ghosh, Rajarshi, Yuan, Bo, Liu, Pengfei, Dai, Hongzheng, Al Masri, Sami, Scull, Jennifer, Posey, Jennifer E., Jiang, Allen H., He, Weimin, Vetrini, Francesco, Braxton, Alicia A., Ward, Patricia, Chiang, Theodore, Qu, Chunjing, Gu, Shen, Shaw, Chad A., Smith, Janice L., Lalani, Seema, Stankiewicz, Pawel, Cheung, Sau-Wai, Bacino, Carlos A., Patel, Ankita, Breman, Amy M., Wang, Xia, Meng, Linyan, Xiao, Rui, Xia, Fan, Muzny, Donna, Gibbs, Richard A., Beaudet, Arthur L., Eng, Christine M., Lupski, James R., Yang, Yaping, Bi, Weimin
Published in Genome medicine (17.05.2019)
Published in Genome medicine (17.05.2019)
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Case Report: Prenatal Identification of a De Novo Mosaic Neocentric Marker Resulting in 13q31.1→qter Tetrasomy in a Mildly Affected Girl
Dharmadhikari, Avinash V., Pereira, Elaine M., Andrews, Carli C ., Macera, Michael, Harkavy, Nina, Wapner, Ronald, Jobanputra, Vaidehi, Levy, Brynn, Ganapathi, Mythily, Liao, Jun
Published in Frontiers in genetics (19.07.2022)
Published in Frontiers in genetics (19.07.2022)
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Compound heterozygous inheritance of two novel COQ2 variants results in familial coenzyme Q deficiency
Abdelhakim, Aliaa H., Dharmadhikari, Avinash V., Ragi, Sara D., de Carvalho, Jose Ronaldo Lima, Xu, Christine L., Thomas, Amanda L., Buchovecky, Christie M., Mansukhani, Mahesh M., Naini, Ali B., Liao, Jun, Jobanputra, Vaidehi, Maumenee, Irene H., Tsang, Stephen H.
Published in Orphanet journal of rare diseases (13.11.2020)
Published in Orphanet journal of rare diseases (13.11.2020)
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Copy number variant analysis improves diagnostic yield in a diverse pediatric exome sequencing cohort
Hahn, Elan, Dharmadhikari, Avinash V., Markowitz, Alexander L., Estrine, Dolores, Quindipan, Catherine, Maggo, Simran D. S., Sharma, Ankit, Lee, Brian, Maglinte, Dennis T., Shams, Soheil, Deardorff, Matthew A., Biegel, Jaclyn A., Gai, Xiaowu, Sun, Miao, Schmidt, Ryan J., Raca, Gordana, Ji, Jianling
Published in Npj genomic medicine (21.02.2025)
Published in Npj genomic medicine (21.02.2025)
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Comparative Analyses of Lung Transcriptomes in Patients with Alveolar Capillary Dysplasia with Misalignment of Pulmonary Veins and in Foxf1 Heterozygous Knockout Mice
Sen, Partha, Dharmadhikari, Avinash V., Majewski, Tadeusz, Mohammad, Mahmoud A., Kalin, Tanya V., Zabielska, Joanna, Ren, Xiaomeng, Bray, Molly, Brown, Hannah M., Welty, Stephen, Thevananther, Sundararajah, Langston, Claire, Szafranski, Przemyslaw, Justice, Monica J., Kalinichenko, Vladimir V., Gambin, Anna, Belmont, John, Stankiewicz, Pawel
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Use of Exome Sequencing for Infants in Intensive Care Units: Ascertainment of Severe Single-Gene Disorders and Effect on Medical Management
Meng, Linyan, Pammi, Mohan, Saronwala, Anirudh, Magoulas, Pilar, Ghazi, Andrew Ray, Vetrini, Francesco, Zhang, Jing, He, Weimin, Dharmadhikari, Avinash V, Qu, Chunjing, Ward, Patricia, Braxton, Alicia, Narayanan, Swetha, Ge, Xiaoyan, Tokita, Mari J, Santiago-Sim, Teresa, Dai, Hongzheng, Chiang, Theodore, Smith, Hadley, Azamian, Mahshid S, Robak, Laurie, Bostwick, Bret L, Schaaf, Christian P, Potocki, Lorraine, Scaglia, Fernando, Bacino, Carlos A, Hanchard, Neil A, Wangler, Michael F, Scott, Daryl, Brown, Chester, Hu, Jianhong, Belmont, John W, Burrage, Lindsay C, Graham, Brett H, Sutton, Vernon Reid, Craigen, William J, Plon, Sharon E, Lupski, James R, Beaudet, Arthur L, Gibbs, Richard A, Muzny, Donna M, Miller, Marcus J, Wang, Xia, Leduc, Magalie S, Xiao, Rui, Liu, Pengfei, Shaw, Chad, Walkiewicz, Magdalena, Bi, Weimin, Xia, Fan, Lee, Brendan, Eng, Christine M, Yang, Yaping, Lalani, Seema R
Published in JAMA pediatrics (04.12.2017)
Published in JAMA pediatrics (04.12.2017)
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Lethal lung hypoplasia and vascular defects in mice with conditional Foxf1 overexpression
Dharmadhikari, Avinash V., Sun, Jenny J., Gogolewski, Krzysztof, Carofino, Brandi L., Ustiyan, Vladimir, Hill, Misty, Majewski, Tadeusz, Szafranski, Przemyslaw, Justice, Monica J., Ray, Russell S., Dickinson, Mary E., Kalinichenko, Vladimir V., Gambin, Anna, Stankiewicz, Paweł
Published in Biology open (15.11.2016)
Published in Biology open (15.11.2016)
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Causal Genetic Variants in Stillbirth
Stanley, Kate E, Giordano, Jessica, Thorsten, Vanessa, Buchovecky, Christie, Thomas, Amanda, Ganapathi, Mythily, Liao, Jun, Dharmadhikari, Avinash V, Revah-Politi, Anya, Ernst, Michelle, Lippa, Natalie, Holmes, Halie, Povysil, Gundula, Hostyk, Joseph, Parker, Corette B, Goldenberg, Robert, Saade, George R, Dudley, Donald J, Pinar, Halit, Hogue, Carol, Reddy, Uma M, Silver, Robert M, Aggarwal, Vimla, Allen, Andrew S, Wapner, Ronald J, Goldstein, David B
Published in The New England journal of medicine (17.09.2020)
Published in The New England journal of medicine (17.09.2020)
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Optical genome mapping improves clinical interpretation of constitutional copy-number gains and reduces their VUS burden
Dharmadhikari, Avinash V., Markowitz, Alexander L., Han, Jennifer, Estrine, Dolores B., Xu, Dong, Ma, Katherine, Fong, Cindy, Fernandez, Bridget A., Deardorff, Matthew A., Schmidt, Ryan J., Ji, Jianling, Raca, Gordana
Published in Genetics in medicine (01.08.2025)
Published in Genetics in medicine (01.08.2025)
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Truncating Variants in NAA15 Are Associated with Variable Levels of Intellectual Disability, Autism Spectrum Disorder, and Congenital Anomalies
Cheng, Hanyin, Dharmadhikari, Avinash V., Varland, Sylvia, Ma, Ning, Domingo, Deepti, Kleyner, Robert, Rope, Alan F., Yoon, Margaret, Stray-Pedersen, Asbjørg, Posey, Jennifer E., Crews, Sarah R., Eldomery, Mohammad K., Akdemir, Zeynep Coban, Lewis, Andrea M., Sutton, Vernon R., Rosenfeld, Jill A., Conboy, Erin, Agre, Katherine, Xia, Fan, Walkiewicz, Magdalena, Longoni, Mauro, High, Frances A., van Slegtenhorst, Marjon A., Mancini, Grazia M.S., Finnila, Candice R., van Haeringen, Arie, den Hollander, Nicolette, Ruivenkamp, Claudia, Naidu, Sakkubai, Mahida, Sonal, Palmer, Elizabeth E., Murray, Lucinda, Lim, Derek, Jayakar, Parul, Parker, Michael J., Giusto, Stefania, Stracuzzi, Emanuela, Romano, Corrado, Beighley, Jennifer S., Bernier, Raphael A., Küry, Sébastien, Nizon, Mathilde, Corbett, Mark A., Shaw, Marie, Gardner, Alison, Barnett, Christopher, Armstrong, Ruth, Kassahn, Karin S., Van Dijck, Anke, Vandeweyer, Geert, Kleefstra, Tjitske, Schieving, Jolanda, Jongmans, Marjolijn J., de Vries, Bert B.A., Pfundt, Rolph, Kerr, Bronwyn, Rojas, Samantha K., Boycott, Kym M., Person, Richard, Willaert, Rebecca, Eichler, Evan E., Kooy, R. Frank, Yang, Yaping, Wu, Joseph C., Lupski, James R., Arnesen, Thomas, Cooper, Gregory M., Chung, Wendy K., Gecz, Jozef, Stessman, Holly A.F., Meng, Linyan, Lyon, Gholson J.
Published in American journal of human genetics (03.05.2018)
Published in American journal of human genetics (03.05.2018)
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Pathogenetics of alveolar capillary dysplasia with misalignment of pulmonary veins
Szafranski, Przemyslaw, Gambin, Tomasz, Dharmadhikari, Avinash V., Akdemir, Kadir Caner, Jhangiani, Shalini N., Schuette, Jennifer, Godiwala, Nihal, Yatsenko, Svetlana A., Sebastian, Jessica, Madan-Khetarpal, Suneeta, Surti, Urvashi, Abellar, Rosanna G., Bateman, David A., Wilson, Ashley L., Markham, Melinda H., Slamon, Jill, Santos-Simarro, Fernando, Palomares, María, Nevado, Julián, Lapunzina, Pablo, Chung, Brian Hon-Yin, Wong, Wai-Lap, Chu, Yoyo Wing Yiu, Mok, Gary Tsz Kin, Kerem, Eitan, Reiter, Joel, Ambalavanan, Namasivayam, Anderson, Scott A., Kelly, David R., Shieh, Joseph, Rosenthal, Taryn C., Scheible, Kristin, Steiner, Laurie, Iqbal, M. Anwar, McKinnon, Margaret L., Hamilton, Sara Jane, Schlade-Bartusiak, Kamilla, English, Dawn, Hendson, Glenda, Roeder, Elizabeth R., DeNapoli, Thomas S., Littlejohn, Rebecca Okashah, Wolff, Daynna J., Wagner, Carol L., Yeung, Alison, Francis, David, Fiorino, Elizabeth K., Edelman, Morris, Fox, Joyce, Hayes, Denise A., Janssens, Sandra, De Baere, Elfride, Menten, Björn, Loccufier, Anne, Vanwalleghem, Lieve, Moerman, Philippe, Sznajer, Yves, Lay, Amy S., Kussmann, Jennifer L., Chawla, Jasneek, Payton, Diane J., Phillips, Gael E., Brosens, Erwin, Tibboel, Dick, de Klein, Annelies, Maystadt, Isabelle, Fisher, Richard, Sebire, Neil, Male, Alison, Chopra, Maya, Pinner, Jason, Malcolm, Girvan, Peters, Gregory, Arbuckle, Susan, Lees, Melissa, Mead, Zoe, Quarrell, Oliver, Sayers, Richard, Owens, Martina, Shaw-Smith, Charles, Lioy, Janet, McKay, Eileen, de Leeuw, Nicole, Feenstra, Ilse, Spruijt, Liesbeth, Elmslie, Frances, Thiruchelvam, Timothy, Bacino, Carlos A., Langston, Claire, Lupski, James R., Sen, Partha, Popek, Edwina, Stankiewicz, Paweł
Published in Human genetics (01.05.2016)
Published in Human genetics (01.05.2016)
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RNA methyltransferase SPOUT1/CENP-32 links mitotic spindle organization with the neurodevelopmental disorder SpADMiSS
Dharmadhikari, Avinash V., Abad, Maria Alba, Khan, Sheraz, Maroofian, Reza, Sands, Tristan T., Ullah, Farid, Samejima, Itaru, Shen, Yanwen, Wear, Martin A., Moore, Kiara E., Kondakova, Elena, Mitina, Natalia, Schaub, Theres, Lee, Grace K., Umandap, Christine H., Berger, Sara M., Iglesias, Alejandro D., Popp, Bernt, Abou Jamra, Rami, Gabriel, Heinz, Rentas, Stefan, Rippert, Alyssa L., Gray, Christopher, Izumi, Kosuke, Conlin, Laura K., Koboldt, Daniel C., Mosher, Theresa Mihalic, Hickey, Scott E., Albert, Dara V. F., Norwood, Haley, Lewanda, Amy Feldman, Dai, Hongzheng, Liu, Pengfei, Mitani, Tadahiro, Marafi, Dana, Eker, Hatice Koçak, Pehlivan, Davut, Posey, Jennifer E., Lippa, Natalie C., Vena, Natalie, Heinzen, Erin L., Goldstein, David B., Mignot, Cyril, de Sainte Agathe, Jean-Madeleine, Al-Sannaa, Nouriya Abbas, Zamani, Mina, Sadeghian, Saeid, Azizimalamiri, Reza, Seifia, Tahere, Zaki, Maha S., Abdel-Salam, Ghada M. H., Abdel-Hamid, Mohamed S., Alabdi, Lama, Alkuraya, Fowzan Sami, Dawoud, Heba, Lofty, Aya, Bauer, Peter, Zifarelli, Giovanni, Afzal, Erum, Zafar, Faisal, Efthymiou, Stephanie, Gossett, Daniel, Towne, Meghan C., Yeneabat, Raey, Perez-Duenas, Belen, Cazurro-Gutierrez, Ana, Verdura, Edgard, Cantarin-Extremera, Veronica, Marques, Ana do Vale, Helwak, Aleksandra, Tollervey, David, Wontakal, Sandeep N., Aggarwal, Vimla S., Rosenfeld, Jill A., Tarabykin, Victor, Ohta, Shinya, Lupski, James R., Houlden, Henry, Earnshaw, William C., Davis, Erica E., Jeyaprakash, A. Arockia, Liao, Jun
Published in Nature communications (17.02.2025)
Published in Nature communications (17.02.2025)
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Clinical validity assessment of genes frequently tested on intellectual disability/autism sequencing panels
Riggs, Erin Rooney, Bingaman, Taylor I., Barry, Carrie-Ann, Behlmann, Andrea, Bluske, Krista, Bostwick, Bret, Bright, Alison, Chen, Chun-An, Clause, Amanda R., Dharmadhikari, Avinash V., Ganapathi, Mythily, Gonzaga-Jauregui, Claudia, Grant, Andrew R., Hughes, Madeline Y., Kim, Se Rin, Krause, Amanda, Liao, Jun, Lumaka, Aimé, Mah, Michelle, Maloney, Caitlin M., Mohan, Shruthi, Osei-Owusu, Ikeoluwa A., Reble, Emma, Rennie, Olivia, Savatt, Juliann M., Shimelis, Hermela, Siegert, Rebecca K., Sneddon, Tam P., Thaxton, Courtney, Toner, Kelly A., Tran, Kien Trung, Webb, Ryan, Wilcox, Emma H., Yin, Jiani, Zhuo, Xinming, Znidarsic, Masa, Martin, Christa Lese, Betancur, Catalina, Vorstman, Jacob A.S., Miller, David T., Schaaf, Christian P.
Published in Genetics in medicine (01.09.2022)
Published in Genetics in medicine (01.09.2022)
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Novel FOXF1 Mutations in Sporadic and Familial Cases of Alveolar Capillary Dysplasia with Misaligned Pulmonary Veins Imply a Role for its DNA Binding Domain
Sen, Partha, Yang, Yaping, Navarro, Colby, Silva, Iris, Szafranski, Przemyslaw, Kolodziejska, Katarzyna E., Dharmadhikari, Avinash V., Mostafa, Hasnaa, Kozakewich, Harry, Kearney, Debra, Cahill, John B., Whitt, Merrissa, Bilic, Masha, Margraf, Linda, Charles, Adrian, Goldblatt, Jack, Gibson, Kathleen, Lantz, Patrick E., Garvin, A. Julian, Petty, John, Kiblawi, Zeina, Zuppan, Craig, McConkie-Rosell, Allyn, McDonald, Marie T., Peterson-Carmichael, Stacey L., Gaede, Jane T., Shivanna, Binoy, Schady, Deborah, Friedlich, Philippe S., Hays, Stephen R., Palafoll, Irene Valenzuela, Siebers-Renelt, Ulrike, Bohring, Axel, Finn, Laura S., Siebert, Joseph R., Galambos, Csaba, Nguyen, Lananh, Riley, Melissa, Chassaing, Nicolas, Vigouroux, Adeline, Rocha, Gustavo, Fernandes, Susana, Brumbaugh, Jane, Roberts, Kari, Ho-ming, Luk, Lo, Ivan F. M., Lam, Stephen, Gerychova, Romana, Jezova, Marta, Valaskova, Iveta, Fellmann, Florence, Afshar, Katayoun, Giannoni, Eric, Muhlethaler, Vincent, Liang, Jinlong, Beckmann, Jacques S., Lioy, Janet, Deshmukh, Hitesh, Srinivasan, Lakshmi, Swarr, Daniel T., Sloman, Melissa, Shaw-Smith, Charles, van Loon, Rosa Laura, Hagman, Cecilia, Sznajer, Yves, Barrea, Catherine, Galant, Christine, Detaille, Thierry, Wambach, Jennifer A., Cole, F. Sessions, Hamvas, Aaron, Prince, Lawrence S., Diderich, Karin E.M., Brooks, Alice S., Verdijk, Robert M., Ravindranathan, Hari, Sugo, Ella, Mowat, David, Baker, Michael L., Langston, Claire, Welty, Stephen, Stankiewicz, Pawel
Published in Human mutation (01.06.2013)
Published in Human mutation (01.06.2013)
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Two deletions overlapping a distant FOXF1 enhancer unravel the role of lncRNA LINC01081 in etiology of alveolar capillary dysplasia with misalignment of pulmonary veins
Szafranski, Przemyslaw, Dharmadhikari, Avinash V., Wambach, Jennifer A., Towe, Chris T., White, Frances V., Grady, R. Mark, Eghtesady, Pirooz, Cole, F. Sessions, Deutsch, Gail, Sen, Partha, Stankiewicz, Paweł
Published in American journal of medical genetics. Part A (01.08.2014)
Published in American journal of medical genetics. Part A (01.08.2014)
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Whole Exome Sequencing detects PYGM variants in two adults with McArdle disease
Thomas-Wilson, Amanda, Dharmadhikari, Avinash V, Heymann, Jonas J, Jobanputra, Vaidehi, DiMauro, Salvatore, Hirano, Michio, Naini, Ali B, Ganapathi, Mythily
Published in Cold Spring Harbor molecular case studies (01.02.2022)
Published in Cold Spring Harbor molecular case studies (01.02.2022)
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