Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas
Moncada, Reuben, Barkley, Dalia, Wagner, Florian, Chiodin, Marta, Devlin, Joseph C, Baron, Maayan, Hajdu, Cristina H, Simeone, Diane M, Yanai, Itai
Published in Nature biotechnology (01.03.2020)
Published in Nature biotechnology (01.03.2020)
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Journal Article
Rewilding Nod2 and Atg16l1 Mutant Mice Uncovers Genetic and Environmental Contributions to Microbial Responses and Immune Cell Composition
Lin, Jian-Da, Devlin, Joseph C., Yeung, Frank, McCauley, Caroline, Leung, Jacqueline M., Chen, Ying-Han, Cronkite, Alex, Hansen, Christina, Drake-Dunn, Charlotte, Ruggles, Kelly V., Cadwell, Ken, Graham, Andrea L., Loke, P’ng
Published in Cell host & microbe (13.05.2020)
Published in Cell host & microbe (13.05.2020)
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Journal Article
Microbial genetic and transcriptional contributions to oxalate degradation by the gut microbiota in health and disease
Liu, Menghan, Devlin, Joseph C, Hu, Jiyuan, Volkova, Angelina, Battaglia, Thomas W, Ho, Melody, Asplin, John R, Byrd, Allyson, Loke, P'ng, Li, Huilin, Ruggles, Kelly V, Tsirigos, Aristotelis, Blaser, Martin J, Nazzal, Lama
Published in eLife (26.03.2021)
Published in eLife (26.03.2021)
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Journal Article
Bacterial contact induces polar plug disintegration to mediate whipworm egg hatching
Robertson, Amicha, Sall, Joseph, Venzon, Mericien, Olivas, Janet J, Zheng, Xuhui, Cammer, Michael, Antao, Noelle, Zhou, Chunyi, Devlin, Joseph C, Saes Thur, Rafaela, Bethony, Jeffrey, Nejsum, Peter, Shopsin, Bo, Torres, Victor J, Liang, Feng-Xia, Cadwell, Ken
Published in PLoS pathogens (22.09.2023)
Published in PLoS pathogens (22.09.2023)
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Journal Article
WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data
Devlin, Joseph C, Battaglia, Thomas, Blaser, Martin J, Ruggles, Kelly V
Published in BMC genomics (25.06.2018)
Published in BMC genomics (25.06.2018)
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Journal Article
mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection
Ivanova, Ellie N., Shwetar, Jasmine, Devlin, Joseph C., Buus, Terkild B., Gray-Gaillard, Sophie, Koide, Akiko, Cornelius, Amber, Samanovic, Marie I., Herrera, Alberto, Mimitou, Eleni P., Zhang, Chenzhen, Karmacharya, Trishala, Desvignes, Ludovic, Ødum, Niels, Smibert, Peter, Ulrich, Robert J., Mulligan, Mark J., Koide, Shohei, Ruggles, Kelly V., Herati, Ramin S., Koralov, Sergei B.
Published in iScience (15.12.2023)
Published in iScience (15.12.2023)
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A Comparative Analysis of SARS-CoV-2 Antivirals Characterizes 3CLpro Inhibitor PF-00835231 as a Potential New Treatment for COVID-19
de Vries, Maren, Mohamed, Adil S, Prescott, Rachel A, Valero-Jimenez, Ana M, Desvignes, Ludovic, O’Connor, Rebecca, Steppan, Claire, Devlin, Joseph C, Ivanova, Ellie, Herrera, Alberto, Schinlever, Austin, Loose, Paige, Ruggles, Kelly, Koralov, Sergei B, Anderson, Annaliesa S, Binder, Joseph, Dittmann, Meike
Published in Journal of virology (26.04.2021)
Published in Journal of virology (26.04.2021)
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Journal Article
Altered Immunity of Laboratory Mice in the Natural Environment Is Associated with Fungal Colonization
Yeung, Frank, Chen, Ying-Han, Lin, Jian-Da, Leung, Jacqueline M., McCauley, Caroline, Devlin, Joseph C., Hansen, Christina, Cronkite, Alex, Stephens, Zac, Drake-Dunn, Charlotte, Fulmer, Yi, Shopsin, Bo, Ruggles, Kelly V., Round, June L., Loke, P’ng, Graham, Andrea L., Cadwell, Ken
Published in Cell host & microbe (13.05.2020)
Published in Cell host & microbe (13.05.2020)
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Journal Article
Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients
Devlin, Joseph C., Axelrad, Jordan, Hine, Ashley M., Chang, Shannon, Sarkar, Suparna, Lin, Jian-Da, Ruggles, Kelly V., Hudesman, David, Cadwell, Ken, Loke, P’ng
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2021)
Published in Gastroenterology (New York, N.Y. 1943) (01.04.2021)
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Journal Article
Recruitment and Maintenance of CX3CR1+CD4+ T Cells during Helminth Infection
Loredan, Denis G, Devlin, Joseph C, Khanna, Kamal M, Loke, P'ng
Published in The Journal of immunology (1950) (15.02.2024)
Published in The Journal of immunology (1950) (15.02.2024)
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Journal Article
Staphylococcus aureus induces a muted host response in human blood that blunts the recruitment of neutrophils
Zwack, Erin E., Chen, Ze, Devlin, Joseph C., Li, Zhi, Zheng, Xuhui, Weinstock, Ada, Lacey, Keenan A., Fisher, Edward A., Fenyö, David, Ruggles, Kelly V., Loke, P’ng, Torres, Victor J.
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2022)
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2022)
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Journal Article
The γδ IEL effector API5 masks genetic susceptibility to Paneth cell death
Matsuzawa-Ishimoto, Yu, Yao, Xiaomin, Koide, Akiko, Ueberheide, Beatrix M, Axelrad, Jordan E, Reis, Bernardo S, Parsa, Roham, Neil, Jessica A, Devlin, Joseph C, Rudensky, Eugene, Dewan, M Zahidunnabi, Cammer, Michael, Blumberg, Richard S, Ding, Yi, Ruggles, Kelly V, Mucida, Daniel, Koide, Shohei, Cadwell, Ken
Published in Nature (London) (20.10.2022)
Published in Nature (London) (20.10.2022)
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Journal Article
Targeting leukocidin-mediated immune evasion protects mice from Staphylococcus aureus bacteremia
Tam, Kayan, Lacey, Keenan A, Devlin, Joseph C, Coffre, Maryaline, Sommerfield, Alexis, Chan, Rita, O'Malley, Aidan, Koralov, Sergei B, Loke, P'ng, Torres, Victor J
Published in The Journal of experimental medicine (07.09.2020)
Published in The Journal of experimental medicine (07.09.2020)
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Journal Article
Identification of a nerve-associated, lung-resident interstitial macrophage subset with distinct localization and immunoregulatory properties
Ural, Basak B, Yeung, Stephen T, Damani-Yokota, Payal, Devlin, Joseph C, de Vries, Maren, Vera-Licona, Paola, Samji, Tasleem, Sawai, Catherine M, Jang, Geunhyo, Perez, Oriana A, Pham, Quynh, Maher, Leigh, Loke, P'ng, Dittmann, Meike, Reizis, Boris, Khanna, Kamal M
Published in Science immunology (27.03.2020)
Published in Science immunology (27.03.2020)
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Journal Article
Single-Cell Analysis of CX3CR1+ Cells Reveals a Pathogenic Role for BIRC5+ Myeloid Proliferating Cells Driven by Staphylococcus aureus Leukotoxins
Loredan, Denis G, Devlin, Joseph C, Lacey, Keenan A, Howard, Nina, Chen, Ze, Zwack, Erin E, Lin, Jian-Da, Ruggles, Kelly V, Khanna, Kamal M, Torres, Victor J, Loke, P'ng
Published in The Journal of immunology (1950) (01.09.2023)
Published in The Journal of immunology (1950) (01.09.2023)
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Journal Article
Distinct Features of Human Myeloid Cell Cytokine Response Profiles Identify Neutrophil Activation by Cytokines as a Prognostic Feature during Tuberculosis and Cancer
Devlin, Joseph C, Zwack, Erin E, Tang, Mei San, Li, Zhi, Fenyo, David, Torres, Victor J, Ruggles, Kelly V, Loke, P'ng
Published in The Journal of immunology (1950) (15.06.2020)
Published in The Journal of immunology (1950) (15.06.2020)
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Journal Article
Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas
Moncada, Reuben, Barkley, Dalia, Wagner, Florian, Chiodin, Marta, Devlin, Joseph C, Baron, Maayan, Hajdu, Cristina H
Published in Nature biotechnology (01.12.2020)
Published in Nature biotechnology (01.12.2020)
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Journal Article
Maternal cecal microbiota transfer rescues early-life antibiotic-induced enhancement of type 1 diabetes in mice
Zhang, Xue-Song, Yin, Yue Sandra, Wang, Jincheng, Battaglia, Thomas, Krautkramer, Kimberly, Li, Wei Vivian, Li, Jackie, Brown, Mark, Zhang, Meifan, Badri, Michelle H., Armstrong, Abigail J.S., Strauch, Christopher M., Wang, Zeneng, Nemet, Ina, Altomare, Nicole, Devlin, Joseph C., He, Linchen, Morton, Jamie T., Chalk, John Alex, Needles, Kelly, Liao, Viviane, Mount, Julia, Li, Huilin, Ruggles, Kelly V., Bonneau, Richard A., Dominguez-Bello, Maria Gloria, Bäckhed, Fredrik, Hazen, Stanley L., Blaser, Martin J.
Published in Cell host & microbe (11.08.2021)
Published in Cell host & microbe (11.08.2021)
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Clostridia isolated from helminth-colonized humans promote the life cycle of Trichuris species
Sargsian, Shushan, Chen, Ze, Lee, Soo Ching, Robertson, Amicha, Thur, Rafaela Saes, Sproch, Julia, Devlin, Joseph C., Tee, Mian Zi, Er, Yi Xian, Copin, Richard, Heguy, Adriana, Pironti, Alejandro, Torres, Victor J., Ruggles, Kelly V., Lim, Yvonne A.L., Bethony, Jeffrey, Loke, P’ng, Cadwell, Ken
Published in Cell reports (Cambridge) (29.11.2022)
Published in Cell reports (Cambridge) (29.11.2022)
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Increased weight gain by C-section: Functional significance of the primordial microbiome
Martinez, 2nd, Keith A, Devlin, Joseph C, Lacher, Corey R, Yin, Yue, Cai, Yi, Wang, Jincheng, Dominguez-Bello, Maria G
Published in Science advances (01.10.2017)
Published in Science advances (01.10.2017)
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