DNA methylation arrays as surrogate measures of cell mixture distribution
Houseman, Eugene Andres, Accomando, William P, Koestler, Devin C, Christensen, Brock C, Marsit, Carmen J, Nelson, Heather H, Wiencke, John K, Kelsey, Karl T
Published in BMC bioinformatics (08.05.2012)
Published in BMC bioinformatics (08.05.2012)
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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray
Salas, Lucas A, Koestler, Devin C, Butler, Rondi A, Hansen, Helen M, Wiencke, John K, Kelsey, Karl T, Christensen, Brock C
Published in Genome Biology (29.05.2018)
Published in Genome Biology (29.05.2018)
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Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling
Salas, Lucas A., Zhang, Ze, Koestler, Devin C., Butler, Rondi A., Hansen, Helen M., Molinaro, Annette M., Wiencke, John K., Kelsey, Karl T., Christensen, Brock C.
Published in Nature communications (09.02.2022)
Published in Nature communications (09.02.2022)
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The Microbiomes of Pancreatic and Duodenum Tissue Overlap and Are Highly Subject Specific but Differ between Pancreatic Cancer and Noncancer Subjects
Del Castillo, Erika, Meier, Richard, Chung, Mei, Koestler, Devin C, Chen, Tsute, Paster, Bruce J, Charpentier, Kevin P, Kelsey, Karl T, Izard, Jacques, Michaud, Dominique S
Published in Cancer epidemiology, biomarkers & prevention (01.02.2019)
Published in Cancer epidemiology, biomarkers & prevention (01.02.2019)
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Sustained O-GlcNAcylation reprograms mitochondrial function to regulate energy metabolism
Tan, Ee Phie, McGreal, Steven R., Graw, Stefan, Tessman, Robert, Koppel, Scott J., Dhakal, Pramod, Zhang, Zhen, Machacek, Miranda, Zachara, Natasha E., Koestler, Devin C., Peterson, Kenneth R., Thyfault, John P., Swerdlow, Russell H., Krishnamurthy, Partha, DiTacchio, Luciano, Apte, Udayan, Slawson, Chad
Published in The Journal of biological chemistry (08.09.2017)
Published in The Journal of biological chemistry (08.09.2017)
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Journal Article
Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression
Vivian, Carolyn J, Brinker, Amanda E, Graw, Stefan, Koestler, Devin C, Legendre, Christophe, Gooden, Gerald C, Salhia, Bodour, Welch, Danny R
Published in Cancer research (Chicago, Ill.) (15.11.2017)
Published in Cancer research (Chicago, Ill.) (15.11.2017)
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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylation data
Zhang, Ze, Wiencke, John K, Kelsey, Karl T, Koestler, Devin C, Christensen, Brock C, Salas, Lucas A
Published in Journal of translational medicine (08.11.2022)
Published in Journal of translational medicine (08.11.2022)
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Synergistic anti-proliferative activity of JQ1 and GSK2801 in triple-negative breast cancer
Yellapu, Nanda Kumar, Ly, Thuc, Sardiu, Mihaela E, Pei, Dong, Welch, Danny R, Thompson, Jeffery A, Koestler, Devin C
Published in BMC cancer (08.06.2022)
Published in BMC cancer (08.06.2022)
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Licofelone Enhances the Efficacy of Paclitaxel in Ovarian Cancer by Reversing Drug Resistance and Tumor Stem-like Properties
Hirst, Jeff, Pathak, Harsh B, Hyter, Stephen, Pessetto, Ziyan Y, Ly, Thuc, Graw, Stefan, Koestler, Devin C, Krieg, Adam J, Roby, Katherine F, Godwin, Andrew K
Published in Cancer research (Chicago, Ill.) (01.08.2018)
Published in Cancer research (Chicago, Ill.) (01.08.2018)
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Journal Article
Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis
Hoen, Anne G., PhD, Li, Jing, MS, Moulton, Lisa A., RN, O'Toole, George A., PhD, Housman, Molly L., MS, Koestler, Devin C., PhD, Guill, Margaret F., MD, Moore, Jason H., PhD, Hibberd, Patricia L., MD, PhD, Morrison, Hilary G., PhD, Sogin, Mitchell L., PhD, Karagas, Margaret R., PhD, Madan, Juliette C., MD, MS
Published in The Journal of pediatrics (01.07.2015)
Published in The Journal of pediatrics (01.07.2015)
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Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data
Gervin, Kristina, Salas, Lucas A, Bakulski, Kelly M, van Zelm, Menno C, Koestler, Devin C, Wiencke, John K, Duijts, Liesbeth, Moll, Henriëtte A, Kelsey, Karl T, Kobor, Michael S, Lyle, Robert, Christensen, Brock C, Felix, Janine F, Jones, Meaghan J
Published in Clinical epigenetics (27.08.2019)
Published in Clinical epigenetics (27.08.2019)
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DNA Methylation, Isocitrate Dehydrogenase Mutation, and Survival in Glioma
CHRISTENSEN, Brock C, SMITH, Ashley A, KELSEY, Karl T, WIENCKE, John K, SHICHUN ZHENG, KOESTLER, Devin C, HOUSEMAN, E. Andres, MARSIT, Carmen J, WIEMELS, Joseph L, NELSON, Heather H, KARAGAS, Margaret R, WRENSCH, Margaret R
Published in JNCI : Journal of the National Cancer Institute (19.01.2011)
Published in JNCI : Journal of the National Cancer Institute (19.01.2011)
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Epigenome-wide scan identifies differentially methylated regions for lung cancer using pre-diagnostic peripheral blood
Zhao, Naisi, Ruan, Mengyuan, Koestler, Devin C., Lu, Jiayun, Marsit, Carmen J., Kelsey, Karl T., Platz, Elizabeth A., Michaud, Dominique S.
Published in Epigenetics (03.04.2022)
Published in Epigenetics (03.04.2022)
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A novel Bayesian adaptive design incorporating both primary and secondary endpoints for randomized IIB chemoprevention study of women at increased risk for breast cancer
Gajewski, Byron J, Kimler, Bruce F, Koestler, Devin C, Mudaranthakam, Dinesh Pal, Young, Kate, Fabian, Carol J
Published in Current controlled trials in cardiovascular medicine (05.12.2022)
Published in Current controlled trials in cardiovascular medicine (05.12.2022)
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AHRR methylation in heavy smokers: associations with smoking, lung cancer risk, and lung cancer mortality
Grieshober, Laurie, Graw, Stefan, Barnett, Matt J, Thornquist, Mark D, Goodman, Gary E, Chen, Chu, Koestler, Devin C, Marsit, Carmen J, Doherty, Jennifer A
Published in BMC cancer (22.09.2020)
Published in BMC cancer (22.09.2020)
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DNA methylation ageing clocks and pancreatic cancer risk: pooled analysis of three prospective nested case-control studies
Chung, Mei, Ruan, Mengyuan, Zhao, Naisi, Koestler, Devin C., De Vivo, Immaculata, Kelsey, Karl T., Michaud, Dominique S.
Published in Epigenetics (02.12.2021)
Published in Epigenetics (02.12.2021)
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Journal Article
DNA Methylation Array Analysis Identifies Profiles of Blood-Derived DNA Methylation Associated With Bladder Cancer
MARSIT, Carmen J, KOESTLER, Devin C, CHRISTENSEN, Brock C, KARAGAS, Margaret R, HOUSEMAN, E. Andres, KELSEY, Karl T
Published in Journal of clinical oncology (20.03.2011)
Published in Journal of clinical oncology (20.03.2011)
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