A radiomics approach to assess tumour-infiltrating CD8 cells and response to anti-PD-1 or anti-PD-L1 immunotherapy: an imaging biomarker, retrospective multicohort study
Sun, Roger, Limkin, Elaine Johanna, Vakalopoulou, Maria, Dercle, Laurent, Champiat, Stéphane, Han, Shan Rong, Verlingue, Loïc, Brandao, David, Lancia, Andrea, Ammari, Samy, Hollebecque, Antoine, Scoazec, Jean-Yves, Marabelle, Aurélien, Massard, Christophe, Soria, Jean-Charles, Robert, Charlotte, Paragios, Nikos, Deutsch, Eric, Ferté, Charles
Published in The lancet oncology (01.09.2018)
Published in The lancet oncology (01.09.2018)
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COMBING: Clustering in Oncology for Mathematical and Biological Identification of Novel Gene Signatures
Battistella, Enzo, Vakalopoulou, Maria, Sun, Roger, Estienne, Theo, Lerousseau, Marvin, Nikolaev, Sergey, Andres, Emilie Alvarez, Carre, Alexandre, Niyoteka, Stephane, Robert, Charlotte, Paragios, Nikos, Deutsch, Eric
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.11.2022)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.11.2022)
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Favorable safety profile of moderate hypofractionated over normofractionated radiotherapy in breast cancer patients: a multicentric prospective real-life data farming analysis
Issoufaly, Irfane, Petit, Claire, Guihard, Sébastien, Eugène, Rémi, Jung, Loic, Clavier, Jean Baptiste, Servagi Vernat, Stéphanie, Bellefqih, Sara, Verret, Benjamin, Bonnet, Naïma, Deutsch, Éric, Rivera, Sofia
Published in Radiation oncology (London, England) (20.04.2022)
Published in Radiation oncology (London, England) (20.04.2022)
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GHOST: Graph-based higher-order similarity transformation for classification
Battistella, Enzo, Vakalopoulou, Maria, Paragios, Nikos, Deutsch, Éric
Published in Pattern recognition (01.11.2024)
Published in Pattern recognition (01.11.2024)
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Optimising efficacy and reducing toxicity of anticancer radioimmunotherapy
Deutsch, Eric, Prof, Chargari, Cyrus, Prof, Galluzzi, Lorenzo, PhD, Kroemer, Guido, Prof
Published in The lancet oncology (01.08.2019)
Published in The lancet oncology (01.08.2019)
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Journal Article
The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics
Deutsch, Eric W, Bandeira, Nuno, Sharma, Vagisha, Perez-Riverol, Yasset, Carver, Jeremy J, Kundu, Deepti J, García-Seisdedos, David, Jarnuczak, Andrew F, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, Hermjakob, Henning, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan A
Published in Nucleic acids research (08.01.2020)
Published in Nucleic acids research (08.01.2020)
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The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
Deutsch, Eric W, Csordas, Attila, Sun, Zhi, Jarnuczak, Andrew, Perez-Riverol, Yasset, Ternent, Tobias, Campbell, David S, Bernal-Llinares, Manuel, Okuda, Shujiro, Kawano, Shin, Moritz, Robert L, Carver, Jeremy J, Wang, Mingxun, Ishihama, Yasushi, Bandeira, Nuno, Hermjakob, Henning, Vizcaíno, Juan Antonio
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
The ProteomeXchange consortium at 10 years: 2023 update
Deutsch, Eric W, Bandeira, Nuno, Perez-Riverol, Yasset, Sharma, Vagisha, Carver, Jeremy J, Mendoza, Luis, Kundu, Deepti J, Wang, Shengbo, Bandla, Chakradhar, Kamatchinathan, Selvakumar, Hewapathirana, Suresh, Pullman, Benjamin S, Wertz, Julie, Sun, Zhi, Kawano, Shin, Okuda, Shujiro, Watanabe, Yu, MacLean, Brendan, MacCoss, Michael J, Zhu, Yunping, Ishihama, Yasushi, Vizcaíno, Juan Antonio
Published in Nucleic acids research (06.01.2023)
Published in Nucleic acids research (06.01.2023)
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Journal Article
Radiotherapy–immunotherapy combinations – perspectives and challenges
Mondini, Michele, Levy, Antonin, Meziani, Lydia, Milliat, Fabien, Deutsch, Eric
Published in Molecular oncology (01.07.2020)
Published in Molecular oncology (01.07.2020)
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Journal Article
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Vizcaíno, Juan A, Deutsch, Eric W, Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A, Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenacher, Martin, Mayer, Gerhard, Gatto, Laurent, Campos, Alex, Chalkley, Robert J, Kraus, Hans-Joachim, Albar, Juan Pablo, Martinez-Bartolomé, Salvador, Apweiler, Rolf, Omenn, Gilbert S, Martens, Lennart, Jones, Andrew R, Hermjakob, Henning
Published in Nature biotechnology (01.03.2014)
Published in Nature biotechnology (01.03.2014)
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Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics
Deutsch, Eric W., Mendoza, Luis, Shteynberg, David, Slagel, Joseph, Sun, Zhi, Moritz, Robert L.
Published in Proteomics. Clinical applications (01.08.2015)
Published in Proteomics. Clinical applications (01.08.2015)
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Journal Article
A cross-platform toolkit for mass spectrometry and proteomics
Chambers, Matthew C, Maclean, Brendan, Burke, Robert, Amodei, Dario, Ruderman, Daniel L, Neumann, Steffen, Gatto, Laurent, Fischer, Bernd, Pratt, Brian, Egertson, Jarrett, Hoff, Katherine, Kessner, Darren, Tasman, Natalie, Shulman, Nicholas, Frewen, Barbara, Baker, Tahmina A, Brusniak, Mi-Youn, Paulse, Christopher, Creasy, David, Flashner, Lisa, Kani, Kian, Moulding, Chris, Seymour, Sean L, Nuwaysir, Lydia M, Lefebvre, Brent, Kuhlmann, Frank, Roark, Joe, Rainer, Paape, Detlev, Suckau, Hemenway, Tina, Huhmer, Andreas, Langridge, James, Connolly, Brian, Chadick, Trey, Holly, Krisztina, Eckels, Josh, Deutsch, Eric W, Moritz, Robert L, Katz, Jonathan E, Agus, David B, MacCoss, Michael, Tabb, David L, Mallick, Parag
Published in Nature biotechnology (01.10.2012)
Published in Nature biotechnology (01.10.2012)
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Journal Article
Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors
Routy, Bertrand, Le Chatelier, Emmanuelle, Derosa, Lisa, Duong, Connie P M, Alou, Maryam Tidjani, Daillère, Romain, Fluckiger, Aurélie, Messaoudene, Meriem, Rauber, Conrad, Roberti, Maria P, Fidelle, Marine, Flament, Caroline, Poirier-Colame, Vichnou, Opolon, Paule, Klein, Christophe, Iribarren, Kristina, Mondragón, Laura, Jacquelot, Nicolas, Qu, Bo, Ferrere, Gladys, Clémenson, Céline, Mezquita, Laura, Masip, Jordi Remon, Naltet, Charles, Brosseau, Solenn, Kaderbhai, Coureche, Richard, Corentin, Rizvi, Hira, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoit, Pons, Nicolas, Ryffel, Bernhard, Minard-Colin, Véronique, Gonin, Patrick, Soria, Jean-Charles, Deutsch, Eric, Loriot, Yohann, Ghiringhelli, François, Zalcman, Gérard, Goldwasser, François, Escudier, Bernard, Hellmann, Matthew D, Eggermont, Alexander, Raoult, Didier, Albiges, Laurence, Kroemer, Guido, Zitvogel, Laurence
Published in Science (American Association for the Advancement of Science) (05.01.2018)
Published in Science (American Association for the Advancement of Science) (05.01.2018)
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Journal Article
iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
Shteynberg, David, Deutsch, Eric W., Lam, Henry, Eng, Jimmy K., Sun, Zhi, Tasman, Natalie, Mendoza, Luis, Moritz, Robert L., Aebersold, Ruedi, Nesvizhskii, Alexey I.
Published in Molecular & cellular proteomics (01.12.2011)
Published in Molecular & cellular proteomics (01.12.2011)
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