BLAST-EXPLORER helps you building datasets for phylogenetic analysis
Dereeper, Alexis, Audic, Stephane, Claverie, Jean-Michel, Blanc, Guillaume
Published in BMC evolutionary biology (12.01.2010)
Published in BMC evolutionary biology (12.01.2010)
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Journal Article
Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution: a case study in diploid and polyploid citrus
Ahmed, Dalel, Comte, Aurore, Curk, Franck, Costantino, Gilles, Luro, François, Dereeper, Alexis, Mournet, Pierre, Froelicher, Yann, Ollitrault, Patrick
Published in Annals of botany (08.07.2019)
Published in Annals of botany (08.07.2019)
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Journal Article
Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures
Combes, Marie‐Christine, Dereeper, Alexis, Severac, Dany, Bertrand, Benoît, Lashermes, Philippe
Published in The New phytologist (01.10.2013)
Published in The New phytologist (01.10.2013)
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Journal Article
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories
Moco, Vincent, Cazenave, Damien, Garnier, Maëlle, Pot, Matthieu, Marcelino, Isabel, Talarmin, Antoine, Guyomard-Rabenirina, Stéphanie, Breurec, Sébastien, Ferdinand, Séverine, Dereeper, Alexis, Reynaud, Yann, Couvin, David
Published in BMC bioinformatics (08.07.2022)
Published in BMC bioinformatics (08.07.2022)
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Journal Article
An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains
Pérez-Quintero, Alvaro L, Rodriguez-R, Luis M, Dereeper, Alexis, López, Camilo, Koebnik, Ralf, Szurek, Boris, Cunnac, Sebastien
Published in PloS one (15.07.2013)
Published in PloS one (15.07.2013)
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Journal Article
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Dereeper, Alexis, Nicolas, Stéphane, Le Cunff, Loïc, Bacilieri, Roberto, Doligez, Agnès, Peros, Jean-Pierre, Ruiz, Manuel, This, Patrice
Published in BMC bioinformatics (05.05.2011)
Published in BMC bioinformatics (05.05.2011)
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Journal Article
Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L
Carrier, Grégory, Le Cunff, Loïc, Dereeper, Alexis, Legrand, Delphine, Sabot, François, Bouchez, Olivier, Audeguin, Laurent, Boursiquot, Jean-Michel, This, Patrice
Published in PloS one (12.03.2012)
Published in PloS one (12.03.2012)
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Journal Article
Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae
Dereeper, Alexis, Allouch, Nina, Guerlais, Vincent, Garnier, Maëlle, Ma, Laurence, De Jonckheere, Johan F, Joseph, Sandeep J, Ali, Ibne Karim M, Talarmin, Antoine, Marcelino, Isabel
Published in Frontiers in microbiology (01.02.2023)
Published in Frontiers in microbiology (01.02.2023)
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Journal Article
Analyses of the Root-Knot Nematode (Meloidogyne graminicola) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants
Petitot, Anne-Sophie, Dereeper, Alexis, Da Silva, Corinne, Guy, Julie, Fernandez, Diana
Published in Pathogens (Basel) (08.08.2020)
Published in Pathogens (Basel) (08.08.2020)
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Journal Article
Inter-genomic DNA Exchanges and Homeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)
Lashermes, Philippe, Hueber, Yann, Combes, Marie-Christine, Severac, Dany, Dereeper, Alexis
Published in G3 : genes - genomes - genetics (01.09.2016)
Published in G3 : genes - genomes - genetics (01.09.2016)
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Journal Article
Intermediate Inheritance with Disomic Tendency in Tetraploid Intergeneric Citrus × Poncirus Hybrids Enhances the Efficiency of Citrus Rootstock Breeding
Calvez, Leny, Dereeper, Alexis, Mournet, Pierre, Froelicher, Yann, Bruyère, Saturnin, Morillon, Raphaël, Ollitrault, Patrick
Published in Agronomy (Basel) (13.12.2020)
Published in Agronomy (Basel) (13.12.2020)
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Journal Article
The fly route of extended-spectrum-β-lactamase-producing Enterobacteriaceae dissemination in a cattle farm: from the ecosystem to the molecular scale
Caderhoussin, Alann, Couvin, David, Gruel, Gaëlle, Quétel, Isaure, Pot, Matthieu, Arquet, Rémy, Dereeper, Alexis, Bambou, Jean-Christophe, Talarmin, Antoine, Ferdinand, Séverine
Published in Frontiers in antibiotics (10.04.2024)
Published in Frontiers in antibiotics (10.04.2024)
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Journal Article
Limited Transmission of Klebsiella pneumoniae among Humans, Animals, and the Environment in a Caribbean Island, Guadeloupe (French West Indies)
Dereeper, Alexis, Gruel, Gaëlle, Pot, Matthieu, Couvin, David, Barbier, Elodie, Bastian, Sylvaine, Bambou, Jean-Christophe, Gelu-Simeon, Moana, Ferdinand, Séverine, Guyomard-Rabenirina, Stéphanie, Passet, Virginie, Martino, Frederic, Piveteau, Pascal, Reynaud, Yann, Rodrigues, Carla, Roger, Pierre-Marie, Roy, Xavier, Talarmin, Antoine, Tressieres, Benoit, Valette, Marc, Brisse, Sylvain, Breurec, Sébastien
Published in Microbiology spectrum (26.10.2022)
Published in Microbiology spectrum (26.10.2022)
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Journal Article
Emergence of a Novel Lineage and Wide Spread of a blaCTX-M-15/IncHI2/ST1 Plasmid among Nosocomial Enterobacter in Guadeloupe
Pot, Matthieu, Reynaud, Yann, Couvin, David, Dereeper, Alexis, Ferdinand, Séverine, Bastian, Sylvaine, Foucan, Tania, Pommier, Jean-David, Valette, Marc, Talarmin, Antoine, Guyomard-Rabenirina, Stéphanie, Breurec, Sébastien
Published in Antibiotics (Basel) (01.10.2022)
Published in Antibiotics (Basel) (01.10.2022)
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Journal Article
Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks
Calvez, Lény, Dereeper, Alexis, Perdereau, Aude, Mournet, Pierre, Miranda, Maëva, Bruyère, Saturnin, Hufnagel, Barbara, Froelicher, Yann, Lemainque, Arnaud, Morillon, Raphaël, Ollitrault, Patrick
Published in Plants (Basel) (12.04.2023)
Published in Plants (Basel) (12.04.2023)
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Journal Article
Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton
Lacape, Jean-Marc, Claverie, Michel, Vidal, Ramon O, Carazzolle, Marcelo F, Guimarães Pereira, Gonçalo A, Ruiz, Manuel, Pré, Martial, Llewellyn, Danny, Al-Ghazi, Yves, Jacobs, John, Dereeper, Alexis, Huguet, Stéphanie, Giband, Marc, Lanaud, Claire
Published in PloS one (15.11.2012)
Published in PloS one (15.11.2012)
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Journal Article
Shifting From Sectoral to Integrated Surveillance by Changing Collaborative Practices: Application to West Nile Virus Surveillance in a Small Island State of the Caribbean
Geffroy, Mariana, Pagès, Nonito, Chavernac, David, Dereeper, Alexis, Aubert, Lydéric, Herrmann-Storck, Cecile, Vega-Rúa, Anubis, Lecollinet, Sylvie, Pradel, Jennifer
Published in Frontiers in public health (10.06.2021)
Published in Frontiers in public health (10.06.2021)
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Journal Article
TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale
Zárate-Chaves, Carlos A, Osorio-Rodríguez, Daniela, Mora, Rubén E, Pérez-Quintero, Álvaro L, Dereeper, Alexis, Restrepo, Silvia, López, Camilo E, Szurek, Boris, Bernal, Adriana
Published in Microorganisms (Basel) (04.02.2021)
Published in Microorganisms (Basel) (04.02.2021)
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Journal Article