Tempo and drivers of plant diversification in the European mountain system
Smyčka, Jan, Roquet, Cristina, Boleda, Martí, Alberti, Adriana, Boyer, Frédéric, Douzet, Rolland, Perrier, Christophe, Rome, Maxime, Valay, Jean-Gabriel, Denoeud, France, Šemberová, Kristýna, Zimmermann, Niklaus E., Thuiller, Wilfried, Wincker, Patrick, Alsos, Inger G., Coissac, Eric, Lavergne, Sébastien
Published in Nature communications (18.05.2022)
Published in Nature communications (18.05.2022)
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Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
Parkin, Isobel A P, Koh, Chushin, Tang, Haibao, Robinson, Stephen J, Kagale, Sateesh, Clarke, Wayne E, Town, Chris D, Nixon, John, Krishnakumar, Vivek, Bidwell, Shelby L, Denoeud, France, Belcram, Harry, Links, Matthew G, Just, Jérémy, Clarke, Carling, Bender, Tricia, Huebert, Terry, Mason, Annaliese S, Pires, J Chris, Barker, Guy, Moore, Jonathan, Walley, Peter G, Manoli, Sahana, Batley, Jacqueline, Edwards, David, Nelson, Matthew N, Wang, Xiyin, Paterson, Andrew H, King, Graham, Bancroft, Ian, Chalhoub, Boulos, Sharpe, Andrew G
Published in Genome Biology (10.06.2014)
Published in Genome Biology (10.06.2014)
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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc
Published in Nature plants (01.11.2018)
Published in Nature plants (01.11.2018)
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Journal Article
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history
Mazéas, Lisa, Bouguerba-Collin, Ahlem, Cock, J Mark, Denoeud, France, Godfroy, Olivier, Brillet-Guéguen, Loraine, Barbeyron, Tristan, Lipinska, Agnieszka P, Delage, Ludovic, Corre, Erwan, Drula, Elodie, Henrissat, Bernard, Czjzek, Mirjam, Terrapon, Nicolas, Hervé, Cécile
Published in BMC genomics (10.10.2024)
Published in BMC genomics (10.10.2024)
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Journal Article
Pervasive tandem duplications and convergent evolution shape coral genomes
Noel, Benjamin, Denoeud, France, Rouan, Alice, Buitrago-López, Carol, Capasso, Laura, Poulain, Julie, Boissin, Emilie, Pousse, Mélanie, Da Silva, Corinne, Couloux, Arnaud, Armstrong, Eric, Carradec, Quentin, Cruaud, Corinne, Labadie, Karine, Lê-Hoang, Julie, Tambutté, Sylvie, Barbe, Valérie, Moulin, Clémentine, Bourdin, Guillaume, Iwankow, Guillaume, Romac, Sarah, Agostini, Sylvain, Banaigs, Bernard, Boss, Emmanuel, Bowler, Chris, de Vargas, Colomban, Douville, Eric, Flores, J Michel, Forcioli, Didier, Furla, Paola, Galand, Pierre E, Lombard, Fabien, Pesant, Stéphane, Reynaud, Stéphanie, Sullivan, Matthew B, Sunagawa, Shinichi, Thomas, Olivier P, Troublé, Romain, Thurber, Rebecca Vega, Allemand, Denis, Planes, Serge, Gilson, Eric, Zoccola, Didier, Wincker, Patrick, Voolstra, Christian R, Aury, Jean-Marc
Published in Genome Biology (01.06.2023)
Published in Genome Biology (01.06.2023)
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Journal Article
Long-read assembly of the Brassica napus reference genome Darmor-bzh
Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc
Published in Gigascience (15.12.2020)
Published in Gigascience (15.12.2020)
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Journal Article
Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay
Le Flèche, Philippe, Jacques, Isabelle, Grayon, Maggy, Al Dahouk, Sascha, Bouchon, Patrick, Denoeud, France, Nöckler, Karsten, Neubauer, Heinrich, Guilloteau, Laurence A, Vergnaud, Gilles
Published in BMC microbiology (09.02.2006)
Published in BMC microbiology (09.02.2006)
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Journal Article
The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants
Porcel, Betina M, Denoeud, France, Opperdoes, Fred, Noel, Benjamin, Madoui, Mohammed-Amine, Hammarton, Tansy C, Field, Mark C, Da Silva, Corinne, Couloux, Arnaud, Poulain, Julie, Katinka, Michael, Jabbari, Kamel, Aury, Jean-Marc, Campbell, David A, Cintron, Roxana, Dickens, Nicholas J, Docampo, Roberto, Sturm, Nancy R, Koumandou, V Lila, Fabre, Sandrine, Flegontov, Pavel, Lukeš, Julius, Michaeli, Shulamit, Mottram, Jeremy C, Szöőr, Balázs, Zilberstein, Dan, Bringaud, Frédéric, Wincker, Patrick, Dollet, Michel
Published in PLoS genetics (01.02.2014)
Published in PLoS genetics (01.02.2014)
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Journal Article
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
Alsos, Inger Greve, Lavergne, Sebastien, Merkel, Marie Kristine Føreid, Boleda, Marti, Lammers, Youri, Alberti, Adriana, Pouchon, Charles, Denoeud, France, Pitelkova, Iva, Pușcaș, Mihai, Roquet, Cristina, Hurdu, Bogdan-Iuliu, Thuiller, Wilfried, Zimmermann, Niklaus E, Hollingsworth, Peter M, Coissac, Eric
Published in Plants (Basel) (01.04.2020)
Published in Plants (Basel) (01.04.2020)
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Journal Article
Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution
Zheng, Deyou, Frankish, Adam, Baertsch, Robert, Kapranov, Philipp, Reymond, Alexandre, Choo, Siew Woh, Lu, Yontao, Denoeud, France, Antonarakis, Stylianos E, Snyder, Michael, Ruan, Yijun, Wei, Chia-Lin, Gingeras, Thomas R, Guigó, Roderic, Harrow, Jennifer, Gerstein, Mark B
Published in Genome Research (01.06.2007)
Published in Genome Research (01.06.2007)
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Journal Article
Evolutionary origins and species delineation of the two Pyrenean endemics Campanula jaubertiana and C. andorrana (Campanulaceae): evidence for transverse alpine speciation
Roquet, Cristina, Smyčka, Jan, Alberti, Adriana, Boleda, Martí, Coissac, Eric, Denoeud, France, Komac, Benjamin, Lavergne, Sébastien, Pladevall, Clara, Sáez, Llorenç
Published in Alpine botany (01.02.2022)
Published in Alpine botany (01.02.2022)
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Journal Article
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
Denoeud, France, Kapranov, Philipp, Ucla, Catherine, Frankish, Adam, Castelo, Robert, Drenkow, Jorg, Lagarde, Julien, Alioto, Tyler, Manzano, Caroline, Chrast, Jacqueline, Dike, Sujit, Wyss, Carine, Henrichsen, Charlotte N, Holroyd, Nancy, Dickson, Mark C, Taylor, Ruth, Hance, Zahra, Foissac, Sylvain, Myers, Richard M, Rogers, Jane, Hubbard, Tim, Harrow, Jennifer, Guigó, Roderic, Gingeras, Thomas R, Antonarakis, Stylianos E, Reymond, Alexandre
Published in Genome Research (01.06.2007)
Published in Genome Research (01.06.2007)
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Journal Article
The complete plastome of Glandora prostrata subsp. lusitanica (Samp.) D.C.Thomas (Boraginaceae), the first chloroplast genome belonging to the Glandora genus
Carvalho Leonardo, Inês, Alberti, Adriana, Denoeud, France, Barreto Crespo, Maria Teresa, Capelo, Jorge, Bustos Gaspar, Frédéric
Published in Mitochondrial DNA. Part B. Resources (01.02.2023)
Published in Mitochondrial DNA. Part B. Resources (01.02.2023)
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Journal Article
The complete plastome of Centaurium erythraea subsp. majus (Hoffmanns. & Link) M.Laínz (Gentianaceae), the first chloroplast genome belonging to the Centaurium genus
Carvalho Leonardo, Inês, Alberti, Adriana, Denoeud, France, Barreto Crespo, Maria Teresa, Capelo, Jorge, Bustos Gaspar, Frédéric
Published in Mitochondrial DNA. Part B. Resources (2023)
Published in Mitochondrial DNA. Part B. Resources (2023)
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Journal Article
Variable Number of Tandem Repeats in Salmonella enterica subsp. enterica for Typing Purposes
RAMISSE, Vincent, HOUSSU, Perrine, HERNANDEZ, Eric, DENOEUD, France, HILAIRE, Valérie, LISANTI, Olivier, RAMISSE, Francoise, CAVALLO, Jean-Didier, VERGNAUD, Gilles
Published in Journal of Clinical Microbiology (01.12.2004)
Published in Journal of Clinical Microbiology (01.12.2004)
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Journal Article
GENCODE: producing a reference annotation for ENCODE
Harrow, Jennifer, Denoeud, France, Frankish, Adam, Reymond, Alexandre, Chen, Chao-Kung, Chrast, Jacqueline, Lagarde, Julien, Gilbert, James G R, Storey, Roy, Swarbreck, David, Rossier, Colette, Ucla, Catherine, Hubbard, Tim, Antonarakis, Stylianos E, Guigo, Roderic
Published in Genome biology (01.01.2006)
Published in Genome biology (01.01.2006)
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Journal Article
A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis
Le Flèche, P, Hauck, Y, Onteniente, L, Prieur, A, Denoeud, F, Ramisse, V, Sylvestre, P, Benson, G, Ramisse, F, Vergnaud, G
Published in BMC microbiology (30.03.2001)
Published in BMC microbiology (30.03.2001)
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