Monkeypox: another test for PCR
Huggett, Jim F, French, David, O'Sullivan, Denise M, Moran-Gilad, Jacob, Zumla, Alimuddin
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (11.08.2022)
Published in Euro surveillance : bulletin européen sur les maladies transmissibles (11.08.2022)
Get full text
Journal Article
The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19
Evans, Daniel, Cowen, Simon, Kammel, Martin, O’Sullivan, Denise M, Stewart, Graham, Grunert, Hans-Peter, Moran-Gilad, Jacob, Verwilt, Jasper, In, Jiwon, Vandesompele, Jo, Harris, Kathryn, Hong, Ki Ho, Storey, Nathaniel, Hingley-Wilson, Suzie, Dühring, Ulf, Bae, Young-Kyung, Foy, Carole A, Braybrook, Julian, Zeichhardt, Heinz, Huggett, Jim F
Published in Clinical chemistry (Baltimore, Md.) (01.01.2022)
Published in Clinical chemistry (Baltimore, Md.) (01.01.2022)
Get full text
Journal Article
Rapid detection of Mycobacterium tuberculosis by recombinase polymerase amplification
Boyle, David S, McNerney, Ruth, Teng Low, Hwee, Leader, Brandon Troy, Pérez-Osorio, Ailyn C, Meyer, Jessica C, O'Sullivan, Denise M, Brooks, David G, Piepenburg, Olaf, Forrest, Matthew S
Published in PloS one (13.08.2014)
Published in PloS one (13.08.2014)
Get full text
Journal Article
Results of German external quality assessment schemes for SARS-CoV-2 antigen detection
Vierbaum, Laura, Wojtalewicz, Nathalie, Grunert, Hans-Peter, Zimmermann, Anika, Scholz, Annemarie, Goseberg, Sabine, Kaiser, Patricia, Duehring, Ulf, Drosten, Christian, Corman, Victor, Niemeyer, Daniela, Rabenau, Holger F., Obermeier, Martin, Nitsche, Andreas, Michel, Janine, Puyskens, Andreas, Huggett, Jim F., O’Sullivan, Denise M., Busby, Eloise, Cowen, Simon, Vallone, Peter M., Cleveland, Megan H., Falak, Samreen, Kummrow, Andreas, Schellenberg, Ingo, Zeichhardt, Heinz, Kammel, Martin
Published in Scientific reports (14.08.2023)
Published in Scientific reports (14.08.2023)
Get full text
Journal Article
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities
O’Sullivan, Denise M., Doyle, Ronan M., Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S., Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C. A., Preston, Mark D., Marchesi, Julian R., Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D., Harris, Kathryn A., Kay, Gemma L., O’Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J., Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G., Moran-Gilad, Jacob, Huggett, Jim F.
Published in Scientific reports (19.05.2021)
Published in Scientific reports (19.05.2021)
Get full text
Journal Article
Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing
Clark, Taane G, Mallard, Kim, Coll, Francesc, Preston, Mark, Assefa, Samuel, Harris, David, Ogwang, Sam, Mumbowa, Francis, Kirenga, Bruce, O'Sullivan, Denise M, Okwera, Alphonse, Eisenach, Kathleen D, Joloba, Moses, Bentley, Stephen D, Ellner, Jerrold J, Parkhill, Julian, Jones-López, Edward C, McNerney, Ruth
Published in PloS one (11.12.2013)
Published in PloS one (11.12.2013)
Get full text
Journal Article
The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs
Phelan, Jody, O'Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Whale, Alexandra S, O'Grady, Justin, Dheda, Keertan, Campino, Susana, McNerney, Ruth, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G
Published in Genome medicine (22.12.2016)
Published in Genome medicine (22.12.2016)
Get full text
Journal Article
Comparison of SARS-CoV-2 N gene real-time RT-PCR targets and commercially available mastermixes
Brown, Julianne R., O’Sullivan, Denise M., Shah, Divya, Atkinson, Laura, Pereira, Rui P.A., Whale, Alexandra S., Busby, Eloise J., Huggett, Jim F., Harris, Kathryn
Published in Journal of virological methods (01.09.2021)
Published in Journal of virological methods (01.09.2021)
Get full text
Journal Article
Low unspliced cell-associated HIV RNA in early treated adolescents living with HIV on long suppressive ART
Gärtner, Kathleen, Domínguez-Rodríguez, Sara, Heaney, Judith, Gkouleli, Triantafylia, Grant, Paul, Dorgham, Karim, Sauce, Delphine, Soulie, Cathia, Busby, Eloise J, O'Sullivan, Denise M, Spyer, Moira, Botha, Johannes C, Muñoz-Fernandez, Maria Angeles, Tagarro, Alfredo, Cotugno, Nicola, Huggett, Jim F, Klein, Nigel, Palma, Paolo, Rojo Conejo, Pablo, Foster, Caroline, Giaquinto, Carlo, Rossi, Paolo, Persaud, Deborah, De Rossi, Anita, Marcelin, Anne-Geneviève, Nastouli, Eleni
Published in Frontiers in immunology (20.02.2024)
Published in Frontiers in immunology (20.02.2024)
Get full text
Journal Article
Detection of Rare Drug Resistance Mutations by Digital PCR in a Human Influenza A Virus Model System and Clinical Samples
Whale, Alexandra S, Bushell, Claire A, Grant, Paul R, Cowen, Simon, Gutierrez-Aguirre, Ion, O'Sullivan, Denise M, Žel, Jana, Milavec, Mojca, Foy, Carole A, Nastouli, Eleni, Garson, Jeremy A, Huggett, Jim F
Published in Journal of clinical microbiology (01.02.2016)
Published in Journal of clinical microbiology (01.02.2016)
Get full text
Journal Article
Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Molecular Typing of Acinetobacter baumannii in Comparison with Orthogonal Methods
Busby, Eloise J, Doyle, Ronan M, Leboreiro Babe, Clara, Harris, Kathryn A, Mack, Damien, Méndez-Cervantes, Gema, O'Sullivan, Denise M, Pang, Vicky, Sadouki, Zahra, Solanki, Priya, Huggett, Jim F, McHugh, Timothy D, Wey, Emmanuel Q
Published in Microbiology spectrum (15.06.2023)
Published in Microbiology spectrum (15.06.2023)
Get full text
Journal Article
Assessing the Variability of Cell-Associated HIV DNA Quantification through a Multicenter Collaborative Study
Le Duff, Yann, Gärtner, Kathleen, Busby, Eloise J, Dalzini, Annalisa, Danaviah, Sivapragashini, Fuentes, José Luis Jiménez, Giaquinto, Carlo, Huggett, Jim F, Hurley, Matthew, Marcellin, Anne-Geneviève, Muñoz-Fernández, María Ángeles, O'Sullivan, Denise M, Persaud, Deborah, Powell, Laura, Rigsby, Peter, Rossi, Paolo, de Rossi, Anita, Siems, Lilly, Smit, Theresa, Watters, Sarah A, Almond, Neil, Nastouli, Eleni
Published in Microbiology spectrum (29.06.2022)
Published in Microbiology spectrum (29.06.2022)
Get full text
Journal Article
Single base mutations in the nucleocapsid gene of SARS-CoV-2 affects amplification efficiency of sequence variants and may lead to assay failure
Storey, Nathaniel, Brown, Julianne R, Pereira, Rui P A, O'Sullivan, Denise M, Huggett, Jim F, Williams, Rachel, Breuer, Judith, Harris, Kathryn A
Published in Journal of clinical virology plus (01.09.2021)
Published in Journal of clinical virology plus (01.09.2021)
Get full text
Journal Article
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs
Phelan, Jody E, O'Sullivan, Denise M, Machado, Diana, Ramos, Jorge, Oppong, Yaa E A, Campino, Susana, O'Grady, Justin, McNerney, Ruth, Hibberd, Martin L, Viveiros, Miguel, Huggett, Jim F, Clark, Taane G
Published in Genome medicine (24.06.2019)
Published in Genome medicine (24.06.2019)
Get full text
Journal Article
Detection of Mycobacterium tuberculosis in sputum by gas chromatography-mass spectrometry of methyl mycocerosates released by thermochemolysis
O'Sullivan, Denise M, Nicoara, Simona C, Mutetwa, Reggie, Mungofa, Stanley, Lee, Oona Y-C, Minnikin, David E, Bardwell, Max W, Corbett, Elizabeth L, McNerney, Ruth, Morgan, Geraint H
Published in PloS one (05.03.2012)
Published in PloS one (05.03.2012)
Get full text
Journal Article
Considerations for the development and application of control materials to improve metagenomic microbial community profiling
Huggett, Jim F., Laver, Thomas, Tamisak, Sasithon, Nixon, Gavin, O’Sullivan, Denise M., Elaswarapu, Ramnath, Studholme, David J., Foy, Carole A.
Published in Accreditation and quality assurance (01.04.2013)
Published in Accreditation and quality assurance (01.04.2013)
Get full text
Journal Article
An assessment of the reproducibility of reverse transcription digital PCR quantification of HIV-1
Falak, Samreen, Macdonald, Rainer, Busby, Eloise J., O'Sullivan, Denise M., Milavec, Mojca, Plauth, Annabell, Kammel, Martin, Zeichhardt, Heinz, Grunert, Hans-Peter, Kummrow, Andreas, Huggett, Jim F.
Published in Methods (San Diego, Calif.) (01.05.2022)
Published in Methods (San Diego, Calif.) (01.05.2022)
Get full text
Journal Article
Ensuring accuracy in the development and application of nucleic acid amplification tests (NAATs) for infectious disease
Huggett, Jim F., O'Sullivan, Denise M., Cowen, Simon, Cleveland, Megan H., Davies, Kerrie, Harris, Kathryn, Moran-Gilad, Jacob, Winter, Amanda, Braybrook, Julian, Messenger, Michael
Published in Molecular aspects of medicine (01.06.2024)
Published in Molecular aspects of medicine (01.06.2024)
Get full text
Journal Article
Digital PCR can augment the interpretation of RT-qPCR Cq values for SARS-CoV-2 diagnostics
Whale, Alexandra S., von der Heide, Eva K., Kohlenberg, Max, Brinckmann, Anja, Baedker, Silke, Karalay, Oezlem, Fernandez-Gonzalez, Ana, Busby, Eloise J., Bustin, Stephen A., Hauser, Heiko, Missel, Andreas, O'Sullivan, Denise M., Huggett, Jim F., Pfaffl, Michael W., Nolan, Tania
Published in Methods (San Diego, Calif.) (01.05.2022)
Published in Methods (San Diego, Calif.) (01.05.2022)
Get full text
Journal Article