GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins
Wang, Chenwei, Xu, Haodong, Lin, Shaofeng, Deng, Wankun, Zhou, Jiaqi, Zhang, Ying, Shi, Ying, Peng, Di, Xue, Yu
Published in Genomics, proteomics & bioinformatics (01.02.2020)
Published in Genomics, proteomics & bioinformatics (01.02.2020)
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Journal Article
PLMD:An updated data resource of protein lysine modifications
Xu, Haodong, Zhou, Jiaqi, Lin, Shaofeng, Deng, Wankun, Zhang, Ying, Xue, Yu
Published in Journal of genetics and genomics (20.05.2017)
Published in Journal of genetics and genomics (20.05.2017)
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Journal Article
PTMD: A Database of Human Disease-associated Post-translational Modifications
Xu, Haodong, Wang, Yongbo, Lin, Shaofeng, Deng, Wankun, Peng, Di, Cui, Qinghua, Xue, Yu
Published in Genomics, proteomics & bioinformatics (01.08.2018)
Published in Genomics, proteomics & bioinformatics (01.08.2018)
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Journal Article
GPS-PAIL: prediction of lysine acetyltransferase-specific modification sites from protein sequences
Deng, Wankun, Wang, Chenwei, Zhang, Ying, Xu, Yang, Zhang, Shuang, Liu, Zexian, Xue, Yu
Published in Scientific reports (22.12.2016)
Published in Scientific reports (22.12.2016)
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Journal Article
Model-based analysis uncovers mutations altering autophagy selectivity in human cancer
Han, Zhu, Zhang, Weizhi, Ning, Wanshan, Wang, Chenwei, Deng, Wankun, Li, Zhidan, Shang, Zehua, Shen, Xiaofei, Liu, Xiaohui, Baba, Otto, Morita, Tsuyoshi, Chen, Lu, Xue, Yu, Jia, Da
Published in Nature communications (31.05.2021)
Published in Nature communications (31.05.2021)
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Journal Article
Integrated omics in Drosophila uncover a circadian kinome
Wang, Chenwei, Shui, Ke, Ma, Shanshan, Lin, Shaofeng, Zhang, Ying, Wen, Bo, Deng, Wankun, Xu, Haodong, Hu, Hui, Guo, Anyuan, Xue, Yu, Zhang, Luoying
Published in Nature communications (01.06.2020)
Published in Nature communications (01.06.2020)
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Journal Article
Mechanism of cargo recognition by retromer-linked SNX-BAR proteins
Yong, Xin, Zhao, Lin, Deng, Wankun, Sun, Hongbin, Zhou, Xue, Mao, Lejiao, Hu, Wenfeng, Shen, Xiaofei, Sun, Qingxiang, Billadeau, Daniel D, Xue, Yu, Jia, Da
Published in PLoS biology (09.03.2020)
Published in PLoS biology (09.03.2020)
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Journal Article
THANATOS: an integrative data resource of proteins and post-translational modifications in the regulation of autophagy
Deng, Wankun, Ma, Lili, Zhang, Ying, Zhou, Jiaqi, Wang, Yongbo, Liu, Zexian, Xue, Yu
Published in Autophagy (01.02.2018)
Published in Autophagy (01.02.2018)
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Journal Article
dbPAF: an integrative database of protein phosphorylation in animals and fungi
Ullah, Shahid, Lin, Shaofeng, Xu, Yang, Deng, Wankun, Ma, Lili, Zhang, Ying, Liu, Zexian, Xue, Yu
Published in Scientific reports (24.03.2016)
Published in Scientific reports (24.03.2016)
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Journal Article
PIM1 promotes hepatic conversion by suppressing reprogramming-induced ferroptosis and cell cycle arrest
Yuan, Yangyang, Wang, Chenwei, Zhuang, Xuran, Lin, Shaofeng, Luo, Miaomiao, Deng, Wankun, Zhou, Jiaqi, Liu, Lihui, Mao, Lina, Peng, Wenbo, Chen, Jian, Wang, Qiangsong, Shu, Yilai, Xue, Yu, Huang, Pengyu
Published in Nature communications (06.09.2022)
Published in Nature communications (06.09.2022)
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Journal Article
DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae
Zhang, Ying, Xie, Yubin, Liu, Wenzhong, Deng, Wankun, Peng, Di, Wang, Chenwei, Xu, Haodong, Ruan, Chen, Deng, Yongjie, Guo, Yaping, Lu, Chenjun, Yi, Cong, Ren, Jian, Xue, Yu
Published in Autophagy (02.04.2020)
Published in Autophagy (02.04.2020)
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Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China
Wang, Yongbo, Dai, Zhangyan, Cheng, Han, Liu, Zexian, Pan, Zhicheng, Deng, Wankun, Gao, Tianshun, Li, Xiaotong, Yao, Yuangen, Ren, Jian, Xue, Yu
Published in Scientific reports (30.07.2013)
Published in Scientific reports (30.07.2013)
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Journal Article
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes
Xu, Yang, Zhang, Shuang, Lin, Shaofeng, Guo, Yaping, Deng, Wankun, Zhang, Ying, Xue, Yu
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations
Zhou, Jiaqi, Xu, Yang, Lin, Shaofeng, Guo, Yaping, Deng, Wankun, Zhang, Ying, Guo, Anyuan, Xue, Yu
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Journal Article
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins
Deng, Wankun, Wang, Yongbo, Ma, Lili, Zhang, Ying, Ullah, Shahid, Xue, Yu
Published in Briefings in bioinformatics (01.07.2017)
Published in Briefings in bioinformatics (01.07.2017)
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Journal Article
CGDB: a database of circadian genes in eukaryotes
Li, Shujing, Shui, Ke, Zhang, Ying, Lv, Yongqiang, Deng, Wankun, Ullah, Shahid, Zhang, Luoying, Xue, Yu
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
An integrative multi-omics approach uncovers the regulatory role of CDK7 and CDK4 in autophagy activation induced by silica nanoparticles
Ruan, Chen, Wang, Chenwei, Gong, Xuanqing, Zhang, Ying, Deng, Wankun, Zhou, Jiaqi, Huang, Dengtong, Wang, Zining, Zhang, Qiong, Guo, Anyuan, Lu, Jiahong, Gao, Jinhao, Peng, Di, Xue, Yu
Published in Autophagy (03.06.2021)
Published in Autophagy (03.06.2021)
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Journal Article
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains
Guo, Yaping, Peng, Di, Zhou, Jiaqi, Lin, Shaofeng, Wang, Chenwei, Ning, Wanshan, Xu, Haodong, Deng, Wankun, Xue, Yu
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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