An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models
Ivanisenko, Timofey V., Demenkov, Pavel S., Ivanisenko, Vladimir A.
Published in International journal of molecular sciences (03.11.2024)
Published in International journal of molecular sciences (03.11.2024)
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Journal Article
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature
Ivanisenko, Timofey V, Saik, Olga V, Demenkov, Pavel S, Ivanisenko, Nikita V, Savostianov, Alexander N, Ivanisenko, Vladimir A
Published in BMC bioinformatics (14.09.2020)
Published in BMC bioinformatics (14.09.2020)
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A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression
Ivanisenko, Vladimir A, Demenkov, Pavel S, Ivanisenko, Timofey V, Mishchenko, Elena L, Saik, Olga V
Published in BMC bioinformatics (05.02.2019)
Published in BMC bioinformatics (05.02.2019)
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Journal Article
Preoperative detection of malignancy in fine-needle aspiration cytology (FNAC) smears with indeterminate cytology (Bethesda III, IV) by a combined molecular classifier
Titov, Sergei, Demenkov, Pavel S, Lukyanov, Sergei A, Sergiyko, Sergei V, Katanyan, Gevork A, Veryaskina, Yulia A, Ivanov, Mikhail K
Published in Journal of clinical pathology (01.11.2020)
Published in Journal of clinical pathology (01.11.2020)
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Journal Article
Prediction of the Aggressive Clinical Course of Papillary Thyroid Carcinoma Based on Fine Needle Aspiration Biopsy Molecular Testing
Lukyanov, Sergei A, Titov, Sergei E, Kozorezova, Evgeniya S, Demenkov, Pavel S, Veryaskina, Yulia A, Korotovskii, Denis V, Ilyina, Tatyana E, Vorobyev, Sergey L, Zhivotov, Vladimir A, Bondarev, Nikita S, Sleptsov, Ilya V, Sergiyko, Sergei V
Published in International journal of molecular sciences (28.06.2024)
Published in International journal of molecular sciences (28.06.2024)
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Journal Article
Combined quantitation of HMGA2 mRNA, microRNAs, and mitochondrial-DNA content enables the identification and typing of thyroid tumors in fine-needle aspiration smears
Titov, Sergei E, Ivanov, Mikhail K, Demenkov, Pavel S, Katanyan, Gevork A, Kozorezova, Eugenia S, Malek, Anastasia V, Veryaskina, Yulia A, Zhimulev, Igor F
Published in BMC cancer (28.10.2019)
Published in BMC cancer (28.10.2019)
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Journal Article
FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets
Tiys, Evgeny S, Ivanisenko, Timofey V, Demenkov, Pavel S, Ivanisenko, Vladimir A
Published in BMC genomics (09.02.2018)
Published in BMC genomics (09.02.2018)
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Journal Article
AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium
Ivanisenko, Vladimir A., Rogachev, Artem D., Makarova, Aelita-Luiza A., Basov, Nikita V., Gaisler, Evgeniy V., Kuzmicheva, Irina N., Demenkov, Pavel S., Venzel, Artur S., Ivanisenko, Timofey V., Antropova, Evgenia A., Kolchanov, Nikolay A., Plesko, Victoria V., Moroz, Gleb B., Lomivorotov, Vladimir V., Pokrovsky, Andrey G.
Published in International journal of molecular sciences (04.11.2024)
Published in International journal of molecular sciences (04.11.2024)
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Journal Article
Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases
Shikhevich, Svetlana, Chadaeva, Irina, Khandaev, Bato, Kozhemyakina, Rimma, Zolotareva, Karina, Kazachek, Anna, Oshchepkov, Dmitry, Bogomolov, Anton, Klimova, Natalya V, Ivanisenko, Vladimir A, Demenkov, Pavel, Mustafin, Zakhar, Markel, Arcady, Savinkova, Ludmila, Kolchanov, Nikolay A, Kozlov, Vladimir, Ponomarenko, Mikhail
Published in International journal of molecular sciences (01.02.2023)
Published in International journal of molecular sciences (01.02.2023)
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Journal Article
Interactome of the hepatitis C virus: Literature mining with ANDSystem
Saik, Olga V., Ivanisenko, Timofey V., Demenkov, Pavel S., Ivanisenko, Vladimir A.
Published in Virus research (15.06.2016)
Published in Virus research (15.06.2016)
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Journal Article
Diagnostic and Prognostic Markers for Pancreatitis and Pancreatic Ductal Adenocarcinoma
Kantheti, Havish S, Hale, Michael A, Pal Choudhuri, Shreoshi, Huang, Huocong, Wang, Xu-Dong, Zolghadri, Yalda, Innamorati, Giulio, Manikonda, Sai Prasada Rao, Reddy, Naviya, Reddy, Sarthak, Kollipara, Rahul K, Lumani, Valbona, Girard, Luc, Bezrukov, Yakov, Demenkov, Pavel, MacDonald, Raymond J, Brekken, Rolf A, Yu, Yonghao, Wilkie, Thomas M
Published in International journal of molecular sciences (01.06.2024)
Published in International journal of molecular sciences (01.06.2024)
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Journal Article
Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection
Bogomolov, Anton, Filonov, Sergey, Chadaeva, Irina, Rasskazov, Dmitry, Khandaev, Bato, Zolotareva, Karina, Kazachek, Anna, Oshchepkov, Dmitry, Ivanisenko, Vladimir A, Demenkov, Pavel, Podkolodnyy, Nikolay, Kondratyuk, Ekaterina, Ponomarenko, Petr, Podkolodnaya, Olga, Mustafin, Zakhar, Savinkova, Ludmila, Kolchanov, Nikolay, Tverdokhleb, Natalya, Ponomarenko, Mikhail
Published in International journal of molecular sciences (19.05.2023)
Published in International journal of molecular sciences (19.05.2023)
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Journal Article
Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystem
Saik, Olga V, Nimaev, Vadim V, Usmonov, Dilovarkhuja B, Demenkov, Pavel S, Ivanisenko, Timofey V, Lavrik, Inna N, Ivanisenko, Vladimir A
Published in BMC medical genomics (13.03.2019)
Published in BMC medical genomics (13.03.2019)
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Journal Article
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection
Antropova, Evgeniya A., Khlebodarova, Tamara M., Demenkov, Pavel S., Volianskaia, Anastasiia R., Venzel, Artur S., Ivanisenko, Nikita V., Gavrilenko, Alexandr D., Ivanisenko, Timofey V., Adamovskaya, Anna V., Revva, Polina M., Kolchanov, Nikolay A., Lavrik, Inna N., Ivanisenko, Vladimir A.
Published in Journal of integrative bioinformatics (01.09.2023)
Published in Journal of integrative bioinformatics (01.09.2023)
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Journal Article
Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks
Saik, Olga V, Demenkov, Pavel S, Ivanisenko, Timofey V, Bragina, Elena Yu, Freidin, Maxim B, Goncharova, Irina A, Dosenko, Victor E, Zolotareva, Olga I, Hofestaedt, Ralf, Lavrik, Inna N, Rogaev, Evgeny I, Ivanisenko, Vladimir A
Published in BMC medical genomics (13.02.2018)
Published in BMC medical genomics (13.02.2018)
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Journal Article
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology
Ivanisenko, Vladimir A, Saik, Olga V, Ivanisenko, Nikita V, Tiys, Evgeny S, Ivanisenko, Timofey V, Demenkov, Pavel S, Kolchanov, Nikolay A
Published in BMC systems biology (15.04.2015)
Published in BMC systems biology (15.04.2015)
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Journal Article
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder
Uvarova, Yulia E., Demenkov, Pavel S., Kuzmicheva, Irina N., Venzel, Artur S., Mischenko, Elena L., Ivanisenko, Timofey V., Efimov, Vadim M., Bannikova, Svetlana V., Vasilieva, Asya R., Ivanisenko, Vladimir A., Peltek, Sergey E.
Published in Journal of integrative bioinformatics (01.09.2023)
Published in Journal of integrative bioinformatics (01.09.2023)
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Journal Article
Radiation hardening and optical properties of materials based on SiO2
Stepanov, Vladimir A., Demenkov, Pavel V., Nikulina, Olga V.
Published in Nuclear energy and technology (2021)
Published in Nuclear energy and technology (2021)
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Journal Article
Sputum Microbiome Composition in Patients with Squamous Cell Lung Carcinoma
Baranova, Elizaveta, Druzhinin, Vladimir, Matskova, Ludmila, Demenkov, Pavel, Volobaev, Valentin, Minina, Varvara, Larionov, Alexey, Titov, Victor
Published in Life (Basel, Switzerland) (01.09.2022)
Published in Life (Basel, Switzerland) (01.09.2022)
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