Assessing the evolutionary impact of amino acid mutations in the human genome
Boyko, Adam R, Williamson, Scott H, Indap, Amit R, Degenhardt, Jeremiah D, Hernandez, Ryan D, Lohmueller, Kirk E, Adams, Mark D, Schmidt, Steffen, Sninsky, John J, Sunyaev, Shamil R, White, Thomas J, Nielsen, Rasmus, Clark, Andrew G, Bustamante, Carlos D
Published in PLoS genetics (01.05.2008)
Published in PLoS genetics (01.05.2008)
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Journal Article
COBRA™: a highly potent conditionally active T cell engager engineered for the treatment of solid tumors
Panchal, Anand, Seto, Pui, Wall, Russell, Hillier, Brian J, Zhu, Ying, Krakow, Jessica, Datt, Aakash, Pongo, Elizabeth, Bagheri, Andisheh, Chen, Tseng-Hui T, Degenhardt, Jeremiah D, Culp, Patricia A, Dettling, Danielle E, Vinogradova, Maia V, May, Chad, DuBridge, Robert B
Published in mAbs (01.01.2020)
Published in mAbs (01.01.2020)
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Journal Article
Complex population structure in African village dogs and its implications for inferring dog domestication history
Boyko, Adam R, Boyko, Ryan H, Boyko, Corin M, Parker, Heidi G, Castelhano, Marta, Corey, Liz, Degenhardt, Jeremiah D, Auton, Adam, Hedimbi, Marius, Kityo, Robert, Ostrander, Elaine A, Schoenebeck, Jeffrey, Todhunter, Rory J, Jones, Paul, Bustamante, Carlos D
Published in Proceedings of the National Academy of Sciences - PNAS (18.08.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (18.08.2009)
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Journal Article
Population Genetic Inference from Personal Genome Data: Impact of Ancestry and Admixture on Human Genomic Variation
KIDD, Jeffrey M, GRAVEL, Simon, MCLAUGHLIN, Stephen F, PECKHAM, Heather E, OMBERG, Larsson, BORMANN CHUNG, Christina A, STANLEY, Sarah, PEARLSTEIN, Kevin, LEVANDOWSKY, Elizabeth, ACEVEDO-ACEVEDO, Suehelay, AUTON, Adam, KEINAN, Alon, BYRNES, Jake, ACUNA-ALONZO, Victor, BARQUERA-LOZANO, Rodrigo, CANIZALES-QUINTEROS, Samuel, ENG, Celeste, BURCHARD, Esteban G, RUSSELL, Archie, REYNOLDS, Andy, CLARK, Andrew G, REESE, Martin G, LINCOLN, Stephen E, MORENO-ESTRADA, Andres, BUTTE, Atul J, DE LA VEGA, Francisco M, BUSTAMANTE, Carlos D, MUSHAROFF, Shaila, BRYC, Katarzyna, DEGENHARDT, Jeremiah D, BRISBIN, Abra, SHETH, Vrunda, RONG CHEN
Published in American journal of human genetics (05.10.2012)
Published in American journal of human genetics (05.10.2012)
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Journal Article
Global distribution of genomic diversity underscores rich complex history of continental human populations
Auton, Adam, Bryc, Katarzyna, Boyko, Adam R, Lohmueller, Kirk E, Novembre, John, Reynolds, Andy, Indap, Amit, Wright, Mark H, Degenhardt, Jeremiah D, Gutenkunst, Ryan N, King, Karen S, Nelson, Matthew R, Bustamante, Carlos D
Published in Genome Research (01.05.2009)
Published in Genome Research (01.05.2009)
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Journal Article
Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta)
Degenhardt, Jeremiah D, de Candia, Paola, Chabot, Adrien, Schwartz, Stuart, Henderson, Les, Ling, Binhua, Hunter, Meredith, Jiang, Zhaoshi, Palermo, Robert E, Katze, Michael, Eichler, Evan E, Ventura, Mario, Rogers, Jeffrey, Marx, Preston, Gilad, Yoav, Bustamante, Carlos D
Published in PLoS genetics (01.01.2009)
Published in PLoS genetics (01.01.2009)
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Journal Article
Regression of EGFR positive established solid tumors in mice with the conditionally active T cell engager TAK-186
Dettling, Danielle E, Kwok, Eilene, Quach, Lucy, Datt, Aakash, Degenhardt, Jeremiah D, Panchal, Anand, Seto, Pui, Krakow, Jessica L, Wall, Russell, Hillier, Brian J, Zhu, Ying, Vinogradova, Maia, DuBridge, Robert B, May, Chad
Published in Journal for immunotherapy of cancer (01.06.2022)
Published in Journal for immunotherapy of cancer (01.06.2022)
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Journal Article
Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii)
Ma, Xin, Kelley, Joanna L, Eilertson, Kirsten, Musharoff, Shaila, Degenhardt, Jeremiah D, Martins, André L, Vinar, Tomas, Kosiol, Carolin, Siepel, Adam, Gutenkunst, Ryan N, Bustamante, Carlos D
Published in PloS one (23.10.2013)
Published in PloS one (23.10.2013)
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Journal Article
Recurrent R-spondin fusions in colon cancer
SESHAGIRI, Somasekar, STAWISKI, Eric W, GUILLORY, Joseph, HA, Connie, DIJKGRAAF, Gerrit J. P, STINSON, Jeremy, GNAD, Florian, HUNTLEY, Melanie A, DEGENHARDT, Jeremiah D, HAVERTY, Peter M, BOURGON, Richard, WEIRU WANG, DURINCK, Steffen, KOEPPEN, Hartmut, GENTLEMAN, Robert, STARR, Timothy K, ZEMIN ZHANG, LARGAESPADA, David A, WU, Thomas D, SAUVAGE, Frederic J. De, MODRUSAN, Zora, STORM, Elaine E, CONBOY, Caitlin B, CHAUDHURI, Subhra, YINGHUI GUAN, JANAKIRAMAN, Vasantharajan, JAISWAL, Bijay S
Published in Nature (London) (30.08.2012)
Published in Nature (London) (30.08.2012)
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Journal Article
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication
Wayne, Robert K, vonHoldt, Bridgett M, Pollinger, John P, Lohmueller, Kirk E, Han, Eunjung, Parker, Heidi G, Quignon, Pascale, Degenhardt, Jeremiah D, Boyko, Adam R, Earl, Dent A, Auton, Adam, Reynolds, Andy, Bryc, Kasia, Brisbin, Abra, Knowles, James C, Mosher, Dana S, Spady, Tyrone C, Elkahloun, Abdel, Geffen, Eli, Pilot, Malgorzata, Jedrzejewski, Wlodzimierz, Greco, Claudia, Randi, Ettore, Bannasch, Danika, Wilton, Alan, Shearman, Jeremy, Musiani, Marco, Cargill, Michelle, Jones, Paul G, Qian, Zuwei, Huang, Wei, Ding, Zhao-Li, Zhang, Ya-ping, Bustamante, Carlos D, Ostrander, Elaine A, Novembre, John
Published in Nature (London) (08.04.2010)
Published in Nature (London) (08.04.2010)
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Journal Article
A simple genetic architecture underlies morphological variation in dogs
Boyko, Adam R, Quignon, Pascale, Li, Lin, Schoenebeck, Jeffrey J, Degenhardt, Jeremiah D, Lohmueller, Kirk E, Zhao, Keyan, Brisbin, Abra, Parker, Heidi G, vonHoldt, Bridgett M, Cargill, Michele, Auton, Adam, Reynolds, Andy, Elkahloun, Abdel G, Castelhano, Marta, Mosher, Dana S, Sutter, Nathan B, Johnson, Gary S, Novembre, John, Hubisz, Melissa J, Siepel, Adam, Wayne, Robert K, Bustamante, Carlos D, Ostrander, Elaine A
Published in PLoS biology (01.08.2010)
Published in PLoS biology (01.08.2010)
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Journal Article
Secondary resistance to idelalisib is characterized by upregulation of IGF1R rather than by MAPK/ERK pathway mutations
Tausch, Eugen, Ljungström, Viktor, Agathangelidis, Andreas, Zapatka, Marc, Scarfò, Lydia, Jebaraj, Billy Michael Chelliah, Yosifov, Deyan Y., Müller, Annika, Munugalavadla, Veerendra, Degenhardt, Jeremiah D., Ghia, Paolo, Rosenquist, Richard, Stilgenbauer, Stephan
Published in Blood (02.06.2022)
Published in Blood (02.06.2022)
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Journal Article
Targets of Balancing Selection in the Human Genome
Andrés, Aida M., Hubisz, Melissa J., Indap, Amit, Torgerson, Dara G., Degenhardt, Jeremiah D., Boyko, Adam R., Gutenkunst, Ryan N., White, Thomas J., Green, Eric D., Bustamante, Carlos D., Clark, Andrew G., Nielsen, Rasmus
Published in Molecular biology and evolution (01.12.2009)
Published in Molecular biology and evolution (01.12.2009)
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Journal Article
Abstract 557: COBRA: A novel conditionally active bispecific antibody that regresses established solid tumors in mice
Dettling, Danielle, Kwok, Eilene, Quach, Lucy, Datt, Aakash, Degenhardt, Jeremiah D., Vinogradova, Maia, Panchal, Anand, Seto, Pui, Krakow, Jessica L., Wall, Russell, Hillier, Brian J., Zhu, Ying, DuBridge, Robert B., May, Chad
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Abstract 2375: A method to identify copy number aberrations (CNAs) from whole exome sequence (WES) data and its application to multiple myeloma cell lines and patient samples
Degenhardt, Jeremiah D., Hoehn, Kenneth B., Kwei, Kevin A., Stephenson, Kristi, Keats, Jonathan J., Kirk, Chris J., Tuch, Brian B.
Published in Cancer research (Chicago, Ill.) (01.10.2014)
Published in Cancer research (Chicago, Ill.) (01.10.2014)
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Journal Article
Whole-Exome Sequencing Revealed No Recurrent Mutations within the PI3K Pathway in Relapsed Chronic Lymphocytic Leukemia Patients Progressing Under Idelalisib Treatment
Ghia, Paolo, Ljungström, Viktor, Tausch, Eugen, Agathangelidis, Andreas, Scheffold, Annika, Scarfo, Lydia, Jebaraj, Billy Michael Chelliah, Owen, Carolyn J., Barrientos, Jacqueline C., Zapatka, Marc, Munugalavadla, Veerendra, Degenhardt, Jeremiah D., Kim, Yeonhee, Dubowy, Ronald L., Dreiling, Lyndah K., Rosenquist, Richard, Stilgenbauer, Stephan
Published in Blood (02.12.2016)
Published in Blood (02.12.2016)
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Journal Article
Immunoglobulin Expression Is a Major Determinant Of Patient Sensitivity To Proteasome Inhibitors
Tuch, Brian B, Loehr, Andrea, Degenhardt, Jeremiah D, Kwei, Kevin A, Keats, Jonathan J, Kirk, Christopher J.
Published in Blood (15.11.2013)
Published in Blood (15.11.2013)
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Journal Article
A Method To Identify Copy Number Aberrations (CNAs) From Whole Exome Sequence (WES) Data and Its Application To Multiple Myeloma Cell Lines and Patient Samples
Degenhardt, Jeremiah D, Hoehn, Kenneth B, Kwei, Kevin A, Keats, Jonathan J, Kirk, Christopher J., Tuch, Brian B
Published in Blood (15.11.2013)
Published in Blood (15.11.2013)
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