Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model
Gomez-Zepeda, David, Arnold-Schild, Danielle, Beyrle, Julian, Declercq, Arthur, Gabriels, Ralf, Kumm, Elena, Preikschat, Annica, Łącki, Mateusz Krzysztof, Hirschler, Aurélie, Rijal, Jeewan Babu, Carapito, Christine, Martens, Lennart, Distler, Ute, Schild, Hansjörg, Tenzer, Stefan
Published in Nature communications (13.03.2024)
Published in Nature communications (13.03.2024)
Get full text
Journal Article
MS2Rescore: Data-Driven Rescoring Dramatically Boosts Immunopeptide Identification Rates
Declercq, Arthur, Bouwmeester, Robbin, Hirschler, Aurélie, Carapito, Christine, Degroeve, Sven, Martens, Lennart, Gabriels, Ralf
Published in Molecular & cellular proteomics (01.08.2022)
Published in Molecular & cellular proteomics (01.08.2022)
Get full text
Journal Article
Updated MS²PIP web server supports cutting-edge proteomics applications
Declercq, Arthur, Bouwmeester, Robbin, Chiva, Cristina, Sabidó, Eduard, Hirschler, Aurélie, Carapito, Christine, Martens, Lennart, Degroeve, Sven, Gabriels, Ralf
Published in Nucleic acids research (05.07.2023)
Published in Nucleic acids research (05.07.2023)
Get full text
Journal Article
MS2Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0
Buur, Louise M., Declercq, Arthur, Strobl, Marina, Bouwmeester, Robbin, Degroeve, Sven, Martens, Lennart, Dorfer, Viktoria, Gabriels, Ralf
Published in Journal of proteome research (02.08.2024)
Published in Journal of proteome research (02.08.2024)
Get full text
Journal Article
MS 2 Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0
Buur, Louise M, Declercq, Arthur, Strobl, Marina, Bouwmeester, Robbin, Degroeve, Sven, Martens, Lennart, Dorfer, Viktoria, Gabriels, Ralf
Published in Journal of proteome research (02.08.2024)
Published in Journal of proteome research (02.08.2024)
Get full text
Journal Article
Intensity and retention time prediction improves the rescoring of protein‐nucleic acid cross‐links
Siraj, Arslan, Bouwmeester, Robbin, Declercq, Arthur, Welp, Luisa, Chernev, Aleksandar, Wulf, Alexander, Urlaub, Henning, Martens, Lennart, Degroeve, Sven, Kohlbacher, Oliver, Sachsenberg, Timo
Published in Proteomics (Weinheim) (01.04.2024)
Published in Proteomics (Weinheim) (01.04.2024)
Get full text
Journal Article
Ionmob: a Python package for prediction of peptide collisional cross-section values
Teschner, David, Gomez-Zepeda, David, Declercq, Arthur, Łącki, Mateusz K, Avci, Seymen, Bob, Konstantin, Distler, Ute, Michna, Thomas, Martens, Lennart, Tenzer, Stefan, Hildebrandt, Andreas
Published in Bioinformatics (Oxford, England) (02.09.2023)
Published in Bioinformatics (Oxford, England) (02.09.2023)
Get full text
Journal Article
Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS 2 Rescore with MS 2 PIP timsTOF fragmentation prediction model
Gomez-Zepeda, David, Arnold-Schild, Danielle, Beyrle, Julian, Declercq, Arthur, Gabriels, Ralf, Kumm, Elena, Preikschat, Annica, Łącki, Mateusz Krzysztof, Hirschler, Aurélie, Rijal, Jeewan Babu, Carapito, Christine, Martens, Lennart, Distler, Ute, Schild, Hansjörg, Tenzer, Stefan
Published in Nature communications (13.03.2024)
Get full text
Published in Nature communications (13.03.2024)
Journal Article