Insights into global diatom distribution and diversity in the world’s ocean
Malviya, Shruti, Scalco, Eleonora, Audic, Stéphane, Vincent, Flora, Veluchamy, Alaguraj, Poulain, Julie, Wincker, Patrick, Iudicone, Daniele, de Vargas, Colomban, Bittner, Lucie, Zingone, Adriana, Bowler, Chris
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2016)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2016)
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Tara Oceans: towards global ocean ecosystems biology
Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Bowler, Chris, Eveillard, Damien, Gorsky, Gabriel, Guidi, Lionel, Iudicone, Daniele, Karsenti, Eric, Lombard, Fabien, Ogata, Hiroyuki, Pesant, Stephane, Sullivan, Matthew B., Wincker, Patrick, de Vargas, Colomban
Published in Nature reviews. Microbiology (01.08.2020)
Published in Nature reviews. Microbiology (01.08.2020)
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Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes
Giner, Caterina R, Forn, Irene, Romac, Sarah, Logares, Ramiro, de Vargas, Colomban, Massana, Ramon
Published in Applied and environmental microbiology (01.08.2016)
Published in Applied and environmental microbiology (01.08.2016)
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods
Pierella Karlusich, Juan José, Pelletier, Eric, Lombard, Fabien, Carsique, Madeline, Dvorak, Etienne, Colin, Sébastien, Picheral, Marc, Cornejo-Castillo, Francisco M., Acinas, Silvia G., Pepperkok, Rainer, Karsenti, Eric, de Vargas, Colomban, Wincker, Patrick, Bowler, Chris, Foster, Rachel A.
Published in Nature communications (06.07.2021)
Published in Nature communications (06.07.2021)
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Patterns of Rare and Abundant Marine Microbial Eukaryotes
Logares, Ramiro, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Gobet, Angélique, Kooistra, Wiebe H.C.F., Mahé, Frédéric, Not, Fabrice, Ogata, Hiroyuki, Pawlowski, Jan, Pernice, Massimo C., Romac, Sarah, Shalchian-Tabrizi, Kamran, Simon, Nathalie, Stoeck, Thorsten, Santini, Sébastien, Siano, Raffaele, Wincker, Patrick, Zingone, Adriana, Richards, Thomas A., de Vargas, Colomban, Massana, Ramon
Published in Current biology (14.04.2014)
Published in Current biology (14.04.2014)
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Journal Article
Extreme Diversity of Diplonemid Eukaryotes in the Ocean
Flegontova, Olga, Flegontov, Pavel, Malviya, Shruti, Audic, Stephane, Wincker, Patrick, de Vargas, Colomban, Bowler, Chris, Lukeš, Julius, Horák, Aleš
Published in Current biology (21.11.2016)
Published in Current biology (21.11.2016)
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Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Le Bescot, Noan, Mahé, Frédéric, Audic, Stéphane, Dimier, Céline, Garet, Marie‐José, Poulain, Julie, Wincker, Patrick, Vargas, Colomban, Siano, Raffaele
Published in Environmental microbiology (01.02.2016)
Published in Environmental microbiology (01.02.2016)
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Journal Article
Phytoplankton taxonomic and functional diversity patterns across a coastal tidal front
Ramond, Pierre, Siano, Raffaele, Schmitt, Sophie, de Vargas, Colomban, Marié, Louis, Memery, Laurent, Sourisseau, Marc
Published in Scientific reports (29.01.2021)
Published in Scientific reports (29.01.2021)
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Journal Article
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Mangot, Jean-François, Logares, Ramiro, Sánchez, Pablo, Latorre, Fran, Seeleuthner, Yoann, Mondy, Samuel, Sieracki, Michael E., Jaillon, Olivier, Wincker, Patrick, Vargas, Colomban de, Massana, Ramon
Published in Scientific reports (27.01.2017)
Published in Scientific reports (27.01.2017)
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Journal Article
High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans
Schoenle, Alexandra, Hohlfeld, Manon, Hermanns, Karoline, Mahé, Frédéric, de Vargas, Colomban, Nitsche, Frank, Arndt, Hartmut
Published in Communications biology (23.04.2021)
Published in Communications biology (23.04.2021)
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Journal Article
Bioprospecting marine plankton
Abida, Heni, Ruchaud, Sandrine, Rios, Laurent, Humeau, Anne, Probert, Ian, De Vargas, Colomban, Bach, Stéphane, Bowler, Chris
Published in Marine drugs (14.11.2013)
Published in Marine drugs (14.11.2013)
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Journal Article
Book Review
Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes
Colin, Sebastien, Coelho, Luis Pedro, Sunagawa, Shinichi, Bowler, Chris, Karsenti, Eric, Bork, Peer, Pepperkok, Rainer, de Vargas, Colomban
Published in eLife (31.10.2017)
Published in eLife (31.10.2017)
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Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure
Brandão, Manoela C., Benedetti, Fabio, Martini, Séverine, Soviadan, Yawouvi Dodji, Irisson, Jean-Olivier, Romagnan, Jean-Baptiste, Elineau, Amanda, Desnos, Corinne, Jalabert, Laëtitia, Freire, Andrea S., Picheral, Marc, Guidi, Lionel, Gorsky, Gabriel, Bowler, Chris, Karp-Boss, Lee, Henry, Nicolas, de Vargas, Colomban, Sullivan, Matthew B., Stemmann, Lars, Lombard, Fabien
Published in Scientific reports (06.10.2021)
Published in Scientific reports (06.10.2021)
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Journal Article
Swarm: robust and fast clustering method for amplicon-based studies
Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah
Published in PeerJ (San Francisco, CA) (25.09.2014)
Published in PeerJ (San Francisco, CA) (25.09.2014)
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Journal Article
Swarm v2: highly-scalable and high-resolution amplicon clustering
Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah
Published in PeerJ (San Francisco, CA) (10.12.2015)
Published in PeerJ (San Francisco, CA) (10.12.2015)
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Journal Article
How marine are Marine Stramenopiles (MAST)? A cross-system evaluation
Obiol, Aleix, Del Campo, Javier, de Vargas, Colomban, Mahé, Frédéric, Massana, Ramon
Published in FEMS microbiology ecology (25.10.2024)
Published in FEMS microbiology ecology (25.10.2024)
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Journal Article
Structure and function of the global ocean microbiome
Sunagawa, S., Coelho, L. P., Chaffron, S., Kultima, J. R., Labadie, K., Salazar, G., Djahanschiri, B., Zeller, G., Mende, D. R., Alberti, A., Cornejo-Castillo, F. M., Costea, P. I., Cruaud, C., d'Ovidio, F., Engelen, S., Ferrera, I., Gasol, J. M., Guidi, L., Hildebrand, F., Kokoszka, F., Lepoivre, C., Lima-Mendez, G., Poulain, J., Poulos, B. T., Royo-Llonch, M., Sarmento, H., Vieira-Silva, S., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Bowler, C., de Vargas, C., Gorsky, G., Grimsley, N., Hingamp, P., Iudicone, D., Jaillon, O., Not, F., Ogata, H., Pesant, S., Speich, S., Stemmann, L., Sullivan, M. B., Weissenbach, J., Wincker, P., Karsenti, E., Raes, J., Acinas, S. G., Bork, P.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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Journal Article
Light-Dependent Transcriptional Regulation of Genes of Biogeochemical Interest in the Diploid and Haploid Life Cycle Stages of Emiliania huxleyi
Richier, Sophie, Kerros, Marie-Emmanuelle, de Vargas, Colomban, Haramaty, Liti, Falkowski, Paul G, Gattuso, Jean-Pierre
Published in Applied and Environmental Microbiology (01.05.2009)
Published in Applied and Environmental Microbiology (01.05.2009)
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Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems
Singer, David, Seppey, Christophe V.W., Lentendu, Guillaume, Dunthorn, Micah, Bass, David, Belbahri, Lassâad, Blandenier, Quentin, Debroas, Didier, de Groot, G. Arjen, de Vargas, Colomban, Domaizon, Isabelle, Duckert, Clément, Izaguirre, Irina, Koenig, Isabelle, Mataloni, Gabriela, Schiaffino, M. Romina, Mitchell, Edward A.D., Geisen, Stefan, Lara, Enrique
Published in Environment international (01.01.2021)
Published in Environment international (01.01.2021)
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Journal Article
Patterns and ecological drivers of ocean viral communities
Brum, J. R., Ignacio-Espinoza, J. C., Doulcier, S. Roux G., Acinas, S. G., Alberti, A., Chaffron, S., Cruaud, C., de Vargas, C., Gasol, J. M., Gorsky, G., Gregory, A. C., Guidi, L., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Poulos, B. T., Schwenck, S. M., Speich, S., Dimier, C., Kandels-Lewis, S., Picheral, M., Searson, S., Bork, P., Bowler, C., Sunagawa, S., Wincker, P., Karsenti, E., Sullivan, M. B.
Published in Science (American Association for the Advancement of Science) (22.05.2015)
Published in Science (American Association for the Advancement of Science) (22.05.2015)
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