Evolution of the murine gut resistome following broad-spectrum antibiotic treatment
de Nies, Laura, Busi, Susheel Bhanu, Tsenkova, Mina, Halder, Rashi, Letellier, Elisabeth, Wilmes, Paul
Published in Nature communications (28.04.2022)
Published in Nature communications (28.04.2022)
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Journal Article
Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams
Busi, Susheel Bhanu, Bourquin, Massimo, Fodelianakis, Stilianos, Michoud, Grégoire, Kohler, Tyler J, Peter, Hannes, Pramateftaki, Paraskevi, Styllas, Michail, Tolosano, Matteo, De Staercke, Vincent, Schön, Martina, de Nies, Laura, Marasco, Ramona, Daffonchio, Daniele, Ezzat, Leïla, Wilmes, Paul, Battin, Tom J
Published in Nature communications (20.04.2022)
Published in Nature communications (20.04.2022)
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Journal Article
Mobilome-driven segregation of the resistome in biological wastewater treatment
de Nies, Laura, Busi, Susheel Bhanu, Kunath, Benoit Josef, May, Patrick, Wilmes, Paul
Published in eLife (16.09.2022)
Published in eLife (16.09.2022)
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Journal Article
PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
de Nies, Laura, Lopes, Sara, Busi, Susheel Bhanu, Galata, Valentina, Heintz-Buschart, Anna, Laczny, Cedric Christian, May, Patrick, Wilmes, Paul
Published in Microbiome (17.02.2021)
Published in Microbiome (17.02.2021)
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Journal Article
257-LB: Long-Term Effects of Birth Mode on Gut Microbiome Colonization
NIES, LAURA DE, BUSI, SUSHEEL BHANU, HABIER, JANINE, WAMPACH, LINDA, HEINTZ-BUSCHART, ANNA, DE BEAUFORT, CARINE, WILMES, PAUL
Published in Diabetes (New York, N.Y.) (01.06.2019)
Published in Diabetes (New York, N.Y.) (01.06.2019)
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Journal Article
Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies
Martínez Arbas, Susana, Busi, Susheel Bhanu, Queirós, Pedro, de Nies, Laura, Herold, Malte, May, Patrick, Wilmes, Paul, Muller, Emilie E. L., Narayanasamy, Shaman
Published in Frontiers in genetics (14.06.2021)
Published in Frontiers in genetics (14.06.2021)
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Journal Article
Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life
Busi, Susheel Bhanu, de Nies, Laura, Habier, Janine, Wampach, Linda, Fritz, Joëlle V, Heintz-Buschart, Anna, May, Patrick, Halder, Rashi, de Beaufort, Carine, Wilmes, Paul
Published in ISME Communications (26.03.2021)
Published in ISME Communications (26.03.2021)
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Journal Article
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters
Busi, Susheel Bhanu, de Nies, Laura, Pramateftaki, Paraskevi, Bourquin, Massimo, Kohler, Tyler J, Ezzat, Leïla, Fodelianakis, Stilianos, Michoud, Grégoire, Peter, Hannes, Styllas, Michail, Tolosano, Matteo, De Staercke, Vincent, Schön, Martina, Galata, Valentina, Wilmes, Paul, Battin, Tom
Published in Microbiology spectrum (14.02.2023)
Published in Microbiology spectrum (14.02.2023)
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Journal Article
Reservoirs of antimicrobial resistance in the context of One Health
Despotovic, Milena, de Nies, Laura, Busi, Susheel Bhanu, Wilmes, Paul
Published in Current opinion in microbiology (01.06.2023)
Published in Current opinion in microbiology (01.06.2023)
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Journal Article
Antibiotic-induced collateral damage to the microbiota and associated infections
de Nies, Laura, Kobras, Carolin M, Stracy, Mathew
Published in Nature reviews. Microbiology (01.12.2023)
Published in Nature reviews. Microbiology (01.12.2023)
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Journal Article
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling
Reitmeier, Sandra, Hitch, Thomas C A, Treichel, Nicole, Fikas, Nikolaos, Hausmann, Bela, Ramer-Tait, Amanda E, Neuhaus, Klaus, Berry, David, Haller, Dirk, Lagkouvardos, Ilias, Clavel, Thomas
Published in ISME Communications (29.06.2021)
Published in ISME Communications (29.06.2021)
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Journal Article
Functional meta-omics provide critical insights into long- and short-read assemblies
Galata, Valentina, Busi, Susheel Bhanu, Kunath, Benoît Josef, de Nies, Laura, Calusinska, Magdalena, Halder, Rashi, May, Patrick, Wilmes, Paul, Laczny, Cédric Christian
Published in Briefings in bioinformatics (05.11.2021)
Published in Briefings in bioinformatics (05.11.2021)
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Journal Article
Altered infective competence of the human gut microbiome in COVID-19
de Nies, Laura, Galata, Valentina, Martin-Gallausiaux, Camille, Despotovic, Milena, Busi, Susheel Bhanu, Snoeck, Chantal J, Delacour, Lea, Budagavi, Deepthi Poornima, Laczny, Cédric Christian, Habier, Janine, Lupu, Paula-Cristina, Halder, Rashi, Fritz, Joëlle V, Marques, Taina, Sandt, Estelle, O'Sullivan, Marc Paul, Ghosh, Soumyabrata, Satagopam, Venkata, Krüger, Rejko, Fagherazzi, Guy, Ollert, Markus, Hefeng, Feng Q, May, Patrick, Wilmes, Paul
Published in Microbiome (09.03.2023)
Published in Microbiome (09.03.2023)
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Journal Article
Emergent "core communities" of microbes, meiofauna and macrofauna at hydrothermal vents
Murdock, S A, Tunnicliffe, V, Boschen-Rose, R E, Juniper, S K
Published in ISME Communications (21.06.2021)
Published in ISME Communications (21.06.2021)
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Journal Article
Glacier-fed stream biofilms harbour diverse resistomes and biosynthetic gene clusters
Susheel Bhanu Busi, De Nies, Laura, Pramateftaki, Paraskevi, Bourquin, Massimo, Kohler, Tyler J, Ezzat, Leila, Fodelianakis, Stylianos, Hannes, Peter, Gregoire Michoud, Styllas, Michail, Tolosano, Matteo, De Staercke, Vincent, Schon, Martina, Galata, Valentina, Wilmes, Paul, Battin, Tom
Published in bioRxiv (19.11.2021)
Published in bioRxiv (19.11.2021)
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