Partner independent fusion gene detection by multiplexed CRISPR-Cas9 enrichment and long read nanopore sequencing
Stangl, Christina, de Blank, Sam, Renkens, Ivo, Westera, Liset, Verbeek, Tamara, Valle-Inclan, Jose Espejo, González, Rocio Chamorro, Henssen, Anton G., van Roosmalen, Markus J., Stam, Ronald W., Voest, Emile E., Kloosterman, Wigard P., van Haaften, Gijs, Monroe, Glen R.
Published in Nature communications (05.06.2020)
Published in Nature communications (05.06.2020)
Get full text
Journal Article
A multispectral 3D live organoid imaging platform to screen probes for fluorescence guided surgery
Jeremiasse, Bernadette, van Ineveld, Ravian L, Bok, Veerle, Kleinnijenhuis, Michiel, de Blank, Sam, Alieva, Maria, Johnson, Hannah R, van Vliet, Esmée J, Zeeman, Amber L, Wellens, Lianne M, Llibre-Palomar, Gerard, Barrera Román, Mario, Di Maggio, Alessia, Dekkers, Johanna F, Oliveira, Sabrina, Vahrmeijer, Alexander L, Molenaar, Jan J, Wijnen, Marc HWA, van der Steeg, Alida FW, Wehrens, Ellen J, Rios, Anne C
Published in EMBO molecular medicine (15.07.2024)
Published in EMBO molecular medicine (15.07.2024)
Get full text
Journal Article
Optimizing Nanopore sequencing-based detection of structural variants enables individualized circulating tumor DNA-based disease monitoring in cancer patients
Valle-Inclan, Jose Espejo, Stangl, Christina, de Jong, Anouk C, van Dessel, Lisanne F, van Roosmalen, Markus J, Helmijr, Jean C A, Renkens, Ivo, Janssen, Roel, de Blank, Sam, de Witte, Chris J, Martens, John W M, Jansen, Maurice P H M, Lolkema, Martijn P, Kloosterman, Wigard P
Published in Genome medicine (18.05.2021)
Published in Genome medicine (18.05.2021)
Get full text
Journal Article
Uncovering the mode of action of engineered T cells in patient cancer organoids
Dekkers, Johanna F, Alieva, Maria, Cleven, Astrid, Keramati, Farid, Wezenaar, Amber K L, van Vliet, Esmée J, Puschhof, Jens, Brazda, Peter, Johanna, Inez, Meringa, Angelo D, Rebel, Heggert G, Buchholz, Maj-Britt, Barrera Román, Mario, Zeeman, Amber L, de Blank, Sam, Fasci, Domenico, Geurts, Maarten H, Cornel, Annelisa M, Driehuis, Else, Millen, Rosemary, Straetemans, Trudy, Nicolasen, Mara J T, Aarts-Riemens, Tineke, Ariese, Hendrikus C R, Johnson, Hannah R, van Ineveld, Ravian L, Karaiskaki, Froso, Kopper, Oded, Bar-Ephraim, Yotam E, Kretzschmar, Kai, Eggermont, Alexander M M, Nierkens, Stefan, Wehrens, Ellen J, Stunnenberg, Henk G, Clevers, Hans, Kuball, Jürgen, Sebestyen, Zsolt, Rios, Anne C
Published in Nature biotechnology (01.01.2023)
Published in Nature biotechnology (01.01.2023)
Get full text
Journal Article
BEHAV3D: a 3D live imaging platform for comprehensive analysis of engineered T cell behavior and tumor response
Alieva, Maria, Barrera Román, Mario, de Blank, Sam, Petcu, Diana, Zeeman, Amber L, Dautzenberg, Noël M M, Cornel, Annelisa M, van de Ven, Cesca, Pieters, Rob, den Boer, Monique L, Nierkens, Stefan, Calkoen, Friso G J, Clevers, Hans, Kuball, Jürgen, Sebestyén, Zsolt, Wehrens, Ellen J, Dekkers, Johanna F, Rios, Anne C
Published in Nature protocols (01.07.2024)
Published in Nature protocols (01.07.2024)
Get full text
Journal Article
Revealing the spatio-phenotypic patterning of cells in healthy and tumor tissues with mLSR-3D and STAPL-3D
van Ineveld, Ravian L, Kleinnijenhuis, Michiel, Alieva, Maria, de Blank, Sam, Barrera Roman, Mario, van Vliet, Esmée J, Martínez Mir, Clara, Johnson, Hannah R, Bos, Frank L, Heukers, Raimond, Chuva de Sousa Lopes, Susana M, Drost, Jarno, Dekkers, Johanna F, Wehrens, Ellen J, Rios, Anne C
Published in Nature biotechnology (01.10.2021)
Published in Nature biotechnology (01.10.2021)
Get full text
Journal Article
BIOL-14. FROM NON-MALIGNANT TO MALIGNANT: GENERATING AND TARGETING DIFFUSE MIDLINE GLIOMA IN A NOVEL HUMAN PONTINE ORGANOID MODEL
Bessler, Nils, Moreno, Cristian Ruiz, Wezenaar, Amber, Dommann, Noëlle, Keramati, Farid, Ariese, Hendrikus C R, Honhoff, Celina, de Blank, Sam, Román, Mario Barrera, Collot, Raphaël, van Ineveld, Ravian, Krashennikova, Maria Alieva, Kranendonk, Mariette E G, Wehrens, Ellen J, Alemany, Anna, Stunnenberg, Henk G, Rios, Anne C
Published in Neuro-oncology (Charlottesville, Va.) (12.06.2023)
Published in Neuro-oncology (Charlottesville, Va.) (12.06.2023)
Get full text
Journal Article
Functional avidity of anti-B7H3 CAR-T constructs predicts antigen density thresholds for triggering effector function
Barisa, Marta, Zappa, Elisa, Muller, Henrike, Shah, Rivani, Buhl, Juliane, Draper, Benjamin, Himsworth, Courtney, Bowers, Chantelle, Munnings-Tomes, Sophie, Nicolaidou, Marilena, Morlando, Sonia, Birley, Kathleen, Leboreiro-Babe, Clara, Vitali, Alice, Privitera, Laura, O'sullivan, Kyle, Greppi, Ailsa, Buschhaus, Magdalena, Mario Barrera Roman, De Blank, Sam, Van Den Ham, Femke, Brenna R Van 't Veld, Ferry, Gabrielle, Donovan, Laura K, Chesler, Louis, Molenaar, Jan J, Drost, Jarno, Rios, Anne C, Chester, Kerry, Wienke, Judith, Anderson, John
Published in bioRxiv (21.02.2024)
Published in bioRxiv (21.02.2024)
Get full text
Paper
Partner-independent fusion gene detection by multiplexed CRISPR/Cas9 enrichment and long-read Nanopore sequencing
Stangl, Christina, De Blank, Sam, Renkens, Ivo, Verbeek, Tamara, Jose Espejo Valle-Inclan, Rocio Chamorro Gonzalez, Henssen, Anton, Roosmalen, Markus, Stam, Ronald, Voest, Emile, Kloosterman, Wigard, Gijs Van Haaften, Monroe, Glen
Published in bioRxiv (22.10.2019)
Published in bioRxiv (22.10.2019)
Get full text
Paper