Shallow Whole Genome Sequencing on Circulating Cell-Free DNA Allows Reliable Noninvasive Copy-Number Profiling in Neuroblastoma Patients
Van Roy, Nadine, Van Der Linden, Malaïka, Menten, Björn, Dheedene, Annelies, Vandeputte, Charlotte, Van Dorpe, Jo, Laureys, Geneviève, Renard, Marleen, Sante, Tom, Lammens, Tim, De Wilde, Bram, Speleman, Frank, De Preter, Katleen
Published in Clinical cancer research (15.10.2017)
Published in Clinical cancer research (15.10.2017)
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Cellular senescence in neuroblastoma
Zanotti, Sofia, Decaesteker, Bieke, Vanhauwaert, Suzanne, De Wilde, Bram, De Vos, Winnok H., Speleman, Frank
Published in British journal of cancer (01.06.2022)
Published in British journal of cancer (01.06.2022)
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Genome-wide study of the effect of blood collection tubes on the cell-free DNA methylome
Van Paemel, Ruben, De Koker, Andries, Caggiano, Christa, Morlion, Annelien, Mestdagh, Pieter, De Wilde, Bram, Vandesompele, Jo, De Preter, Katleen
Published in Epigenetics (03.07.2021)
Published in Epigenetics (03.07.2021)
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The pitfalls and promise of liquid biopsies for diagnosing and treating solid tumors in children: a review
Van Paemel, Ruben, Vlug, Roos, De Preter, Katleen, Van Roy, Nadine, Speleman, Frank, Willems, Leen, Lammens, Tim, Laureys, Geneviève, Schleiermacher, Gudrun, Tytgat, Godelieve A. M., Astrahantseff, Kathy, Deubzer, Hedwig, De Wilde, Bram
Published in European journal of pediatrics (01.02.2020)
Published in European journal of pediatrics (01.02.2020)
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Minimally invasive classification of paediatric solid tumours using reduced representation bisulphite sequencing of cell-free DNA: a proof-of-principle study
Van Paemel, Ruben, De Koker, Andries, Vandeputte, Charlotte, van Zogchel, Lieke, Lammens, Tim, Laureys, Geneviève, Vandesompele, Jo, Schleiermacher, Gudrun, Chicard, Mathieu, Van Roy, Nadine, Vicha, Ales, Tytgat, G.A.M., Callewaert, Nico, De Preter, Katleen, De Wilde, Bram
Published in Epigenetics (01.02.2021)
Published in Epigenetics (01.02.2021)
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Targeted expression of mutated ALK induces neuroblastoma in transgenic mice
Heukamp, Lukas C, Thor, Theresa, Schramm, Alexander, De Preter, Katleen, Kumps, Candy, De Wilde, Bram, Odersky, Andrea, Peifer, Martin, Lindner, Sven, Spruessel, Annika, Pattyn, Filip, Mestdagh, Pieter, Menten, Björn, Kuhfittig-Kulle, Steffi, Künkele, Annette, König, Katharina, Meder, Lydia, Chatterjee, Sampurna, Ullrich, Roland T, Schulte, Stefanie, Vandesompele, Jo, Speleman, Frank, Büttner, Reinhard, Eggert, Angelika, Schulte, Johannes H
Published in Science translational medicine (04.07.2012)
Published in Science translational medicine (04.07.2012)
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High-throughput PCR assay design for targeted resequencing using primerXL
Lefever, Steve, Pattyn, Filip, De Wilde, Bram, Coppieters, Frauke, De Keulenaer, Sarah, Hellemans, Jan, Vandesompele, Jo
Published in BMC bioinformatics (06.09.2017)
Published in BMC bioinformatics (06.09.2017)
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NBAtlas: A harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors
Bonine, Noah, Zanzani, Vittorio, Van Hemelryk, Annelies, Vanneste, Bavo, Zwicker, Christian, Thoné, Tinne, Roelandt, Sofie, Bekaert, Sarah-Lee, Koster, Jan, Janoueix-Lerosey, Isabelle, Thirant, Cécile, Van Haver, Stéphane, Roberts, Stephen S., Mus, Liselot M., De Wilde, Bram, Van Roy, Nadine, Everaert, Celine, Speleman, Frank, Vermeirssen, Vanessa, Scott, Charlotte L., De Preter, Katleen
Published in Cell reports (Cambridge) (22.10.2024)
Published in Cell reports (Cambridge) (22.10.2024)
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mRNA Capture Sequencing and RT-qPCR for the Detection of Pathognomonic, Novel, and Secondary Fusion Transcripts in FFPE Tissue: A Sarcoma Showcase
Decock, Anneleen, Creytens, David, Lefever, Steve, Van der Meulen, Joni, Anckaert, Jasper, De Ganck, Ariane, Deleu, Jill, De Wilde, Bram, Fierro, Carolina, Kuersten, Scott, Luypaert, Manuel, Rottiers, Isabelle, Schroth, Gary P., Steyaert, Sandra, Vanderheyden, Katrien, Vanden Eynde, Eveline, Verniers, Kimberly, Verreth, Joke, Van Dorpe, Jo, Vandesompele, Jo
Published in International journal of molecular sciences (01.10.2022)
Published in International journal of molecular sciences (01.10.2022)
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Digital PCR-based evaluation of nucleic acid extraction kit performance for the co-purification of cell-free DNA and RNA
Deleu, Jill, Schoofs, Kathleen, Decock, Anneleen, Verniers, Kimberly, Roelandt, Sofie, Denolf, Angie, Verreth, Joke, De Wilde, Bram, Van Maerken, Tom, De Preter, Katleen, Vandesompele, Jo
Published in Human genomics (31.12.2022)
Published in Human genomics (31.12.2022)
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The ETS transcription factor ETV5 is a target of activated ALK in neuroblastoma contributing to increased tumour aggressiveness
Mus, Liselot M., Lambertz, Irina, Claeys, Shana, Kumps, Candy, Van Loocke, Wouter, Van Neste, Christophe, Umapathy, Ganesh, Vaapil, Marica, Bartenhagen, Christoph, Laureys, Genevieve, De Wever, Olivier, Bexell, Daniel, Fischer, Matthias, Hallberg, Bengt, Schulte, Johannes, De Wilde, Bram, Durinck, Kaat, Denecker, Geertrui, De Preter, Katleen, Speleman, Frank
Published in Scientific reports (14.01.2020)
Published in Scientific reports (14.01.2020)
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Diagnosis of pediatric central nervous system tumors using methylation profiling of cfDNA from cerebrospinal fluid
Cornelli, Lotte, Van Paemel, Ruben, Ferro Dos Santos, Maísa R, Roelandt, Sofie, Willems, Leen, Vandersteene, Jelle, Baert, Edward, Mus, Liselot M, Van Roy, Nadine, De Wilde, Bram, De Preter, Katleen
Published in Clinical epigenetics (05.07.2024)
Published in Clinical epigenetics (05.07.2024)
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Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait
Decock, Anneleen, Ongenaert, Maté, De Wilde, Bram, Brichard, Bénédicte, Noguera, Rosa, Speleman, Frank, Vandesompele, Jo
Published in Epigenetics (02.10.2016)
Published in Epigenetics (02.10.2016)
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Correction to: The pitfalls and promise of liquid biopsies for diagnosing and treating solid tumors in children: as review
Van Paemel, Ruben, Vlug, Roos, De Preter, Katleen, Van Roy, Nadine, Speleman, Frank, Willems, Leen, Lammens, Tim, Laureys, Geneviève, Schleiermacher, Gudrun, Tytgat, Godelieve A. M., Astrahantseff, Kathy, Deubzer, Hedwig, De Wilde, Bram
Published in European journal of pediatrics (01.09.2020)
Published in European journal of pediatrics (01.09.2020)
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Case series on clinical applications of liquid biopsy in pediatric solid tumors: towards improved diagnostics and disease monitoring
Gelineau, Nina U, van Barneveld, Astrid, Samim, Atia, Van Zogchel, Lieke, Lak, Nathalie, Tas, Michelle L, Matser, Yvette, Mavinkurve-Groothuis, Annelies M C, van Grotel, Martine, Zsiros, Jószef, van Eijkelenburg, Natasha K A, Knops, Rutger R G, van Ewijk, Roelof, Langenberg, Karin P S, Krijger, Ronald De, Hiemcke-Jiwa, Laura S, Van Paemel, Ruben, Cornelli, Lotte, De Preter, Katleen, De Wilde, Bram, Van Der Schoot, Ellen, Tytgat, Godelieve
Published in Frontiers in oncology (17.08.2023)
Published in Frontiers in oncology (17.08.2023)
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Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
Vermeirssen, Vanessa, Deleu, Jill, Morlion, Annelien, Everaert, Celine, De Wilde, Jilke, Anckaert, Jasper, Durinck, Kaat, Nuytens, Justine, Rishfi, Muhammad, Speleman, Frank, Van Droogenbroeck, Hanne, Verniers, Kimberly, Baietti, Maria Francesca, Albersen, Maarten, Leucci, Eleonora, Post, Edward, Best, Myron G, Van Maerken, Tom, De Wilde, Bram, Vandesompele, Jo, Decock, Anneleen
Published in NAR cancer (01.12.2022)
Published in NAR cancer (01.12.2022)
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Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Decock, Anneleen, Ongenaert, Maté, Cannoodt, Robrecht, Verniers, Kimberly, De Wilde, Bram, Laureys, Geneviève, Van Roy, Nadine, Berbegall, Ana P, Bienertova-Vasku, Julie, Bown, Nick, Clément, Nathalie, Combaret, Valérie, Haber, Michelle, Hoyoux, Claire, Murray, Jayne, Noguera, Rosa, Pierron, Gaelle, Schleiermacher, Gudrun, Schulte, Johannes H, Stallings, Ray L, Tweddle, Deborah A, De Preter, Katleen, Speleman, Frank, Vandesompele, Jo
Published in Oncotarget (12.01.2016)
Published in Oncotarget (12.01.2016)
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A phase 1, first-in-child, multicenter study to evaluate the safety and efficacy of the oncolytic herpes virus talimogene laherparepvec in pediatric patients with advanced solid tumors
Moreno, Lucas, Teira, Pierre, Croop, James M, Gerber, Nicolas U, André, Nicolas, Aerts, Isabelle, Gros Subias, Luis, De Wilde, Bram, Bautista, Francisco, Turpin, Brian, Kunduri, Srinivasa, Hamidi, Ali, Lawrence, Tatiana, Streby, Keri A
Published in Frontiers in pediatrics (24.05.2023)
Published in Frontiers in pediatrics (24.05.2023)
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CASP8 SNP D302H (rs1045485) is associated with worse survival in MYCN-amplified neuroblastoma patients
Rihani, Ali, De Wilde, Bram, Zeka, Fjoralba, Laureys, Geneviève, Francotte, Nadine, Tonini, Gian Paolo, Coco, Simona, Versteeg, Rogier, Noguera, Rosa, Schulte, Johannes H, Eggert, Angelika, Stallings, Raymond L, Speleman, Frank, Vandesompele, Jo, Van Maerken, Tom
Published in PloS one (11.12.2014)
Published in PloS one (11.12.2014)
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Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics
De Leeneer, Kim, De Schrijver, Joachim, Clement, Lieven, Baetens, Machteld, Lefever, Steve, De Keulenaer, Sarah, Van Criekinge, Wim, Deforce, Dieter, Van Nieuwerburgh, Filip, Bekaert, Sofie, Pattyn, Filip, De Wilde, Bram, Coucke, Paul, Vandesompele, Jo, Claes, Kathleen, Hellemans, Jan
Published in PloS one (30.09.2011)
Published in PloS one (30.09.2011)
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