Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA
Vaisvila, Romualdas, Ponnaluri, V.K. Chaithanya, Sun, Zhiyi, Langhorst, Bradley W., Saleh, Lana, Guan, Shengxi, Dai, Nan, Campbell, Matthew A., Sexton, Brittany S., Marks, Katherine, Samaranayake, Mala, Samuelson, James C., Church, Heidi E., Tamanaha, Esta, Corrêa, Ivan R., Pradhan, Sriharsa, Dimalanta, Eileen T., Evans, Thomas C., Williams, Louise, Davis, Theodore B.
Published in Genome research (01.07.2021)
Published in Genome research (01.07.2021)
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Nondestructive enzymatic deamination enables single-molecule long-read amplicon sequencing for the determination of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
Sun, Zhiyi, Vaisvila, Romualdas, Hussong, Laura-Madison, Yan, Bo, Baum, Chloé, Saleh, Lana, Samaranayake, Mala, Guan, Shengxi, Dai, Nan, Corrêa, Jr, Ivan R, Pradhan, Sriharsa, Davis, Theodore B, Evans, Jr, Thomas C, Ettwiller, Laurence M
Published in Genome research (01.02.2021)
Published in Genome research (01.02.2021)
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Absence of founder effect and evidence for adaptive divergence in a recently introduced insular population of white‐tailed deer (Odocoileus virginianus)
Fuller, Jérémie, Ferchaud, Anne‐Laure, Laporte, Martin, Le Luyer, Jérémy, Davis, Theodore B., Côté, Steeve D., Bernatchez, Louis
Published in Molecular ecology (01.01.2020)
Published in Molecular ecology (01.01.2020)
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Abstract 1387: Application of target enrichment combined with unique molecular identifiers to determine allelic frequencies of human cancers
Kraushaar, Daniel C., Bowman, Sarah K., Davis, Theodore B., Emerman, Amy B., Henig, Noa, Patel, Kruti M., Russello, Salvatore, Hendrickson, Cynthia L.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Abstract 1398: RNA DIRECT: A novel strategy for targeted RNA enrichment of transcripts associated with solid tumors
Patel, Kruti M., Bowman, Sarah K., Davis, Theodore B., Russello, Salvatore, Kraushaar, Daniel C., Emerman, Amy B., Henig, Noa, Hendrickson, Cynthia L.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Abstract 3998: Sequencing the B-cell and T-cell repertoire
Stewart, Fiona J., Karaca, Mehmet, Adams, Kris, Clouser, Chris, Patel, Bonny, Timberlake, Sonia, Donahue, William, Apone, Lynne, Russello, Salvatore, Dimalanta, Eileen T., Davis, Theodore B., Vigneault, Francois
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Abstract 3628: Improving sequencing quality of libraries prepared from FFPE DNA
liu, pingfang, Chen, Lixin, Ettwiller, Laurence, Sumner, Christine, Stewart, Fiona J., Dimalanta, Eileen T., Davis, Theodore B., Thomas, Evans C.
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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A Robust, Streamlined, Enzyme-based DNA Library Preparation Method Amenable to a Wide Range of DNA Inputs
Hoppers, Amanda, Apone, Lynne, Panchapakesa, Vaishnavi, McKay, Karen, Liu, Pingfang, Song, Chen, Sumner, Christine, Rozzi, Christine, Arn, Melissa, Sanford, Jonathan, Langhorst, Bradley W, Shtatland, Timur, Stewart, Fiona J, Munafo, Daniela, Dimalanta, Eileen T, Davis, Theodore B
Published in Journal of biomolecular techniques (01.12.2019)
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Published in Journal of biomolecular techniques (01.12.2019)
Journal Article
A Microbiome DNA Enrichment Method for Next-Generation Sequencing Sample Preparation
Yigit, Erbay, Feehery, George R, Langhorst, Bradley W, Stewart, Fiona J, Dimalanta, Eileen T, Pradhan, Sriharsa, Slatko, Barton, Gardner, Andrew F, McFarland, James, Sumner, Christine, Davis, Theodore B
Published in Current protocols in molecular biology (Print) (01.07.2016)
Published in Current protocols in molecular biology (Print) (01.07.2016)
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Selective Depletion of Abundant RNAs to Enable Transcriptome Analysis of Low-Input and Highly Degraded Human RNA
Munafó, Daniela B, Langhorst, Bradley W, Chater, Christine L, Sumner, Christine J, Rodríguez, Deyra N, Russello, Salvatore, Gardner, Andrew F, Slatko, Barton E, Stewart, Fiona J, Sinicropi, Dominick, Morlan, John, Qu, Kunbin, Dimalanta, Eileen T, Davis, Theodore B
Published in Current protocols in molecular biology (Print) (01.01.2016)
Published in Current protocols in molecular biology (Print) (01.01.2016)
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Ecto-protein kinase activity on the external surface of neural cells
Ehrlich, Y H, Davis, T B, Bock, E, Kornecki, E, Lenox, R H
Published in Nature (London) (06.03.1986)
Published in Nature (London) (06.03.1986)
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A fast solution to NGS library preparation with low nanogram DNA input
Liu, Pingfang, Lohman, Gregory JS, Cantor, Eric, Langhorst, Bradley W, Yigit, Erbay, Apone, Lynne M, Munafo, Daniela B, Sumner, Christine, Stewart, Fiona J, Evans, Thomas C, Nichols, Nicole M, Dimalanta, Eileen T, Davis, Theodore B
Published in BMC proceedings (01.10.2012)
Published in BMC proceedings (01.10.2012)
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Abstract 2099: EM-seq enables accurate and precise methylome analysis of challenging DNA samples
Ponnaluri, V K Chaithanya, Williams, Louise, Campbell, Matthew A., Panchapakesa, Vaishnavi, Vaisvila, Romualdas, Langhorst, Bradley, Dimalanta, Eileen, Davis, Theodore B.
Published in Cancer research (Chicago, Ill.) (01.07.2021)
Published in Cancer research (Chicago, Ill.) (01.07.2021)
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Abstract 3526: Incorporation of unique molecular identifiers (UMIs) into unique dual sample indexing (UDI) improves the accuracy of quantitative next generation sequencing
Liu, Pingfang, Krishnan, Keerthana, Devoe, Camille X., Langhorst, Bradley W., Dimalanta, Eileen, Davis, Theodore B.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Abstract 4046: Immune repertoire sequencing reveals tumor microenvironment and tracks clonally expanded B cell and T cell in blood
Song, Chen, Liu, Pingfang, Barry, Andrew, Langhorst, Bradley W., Stewart, Fiona J., Russello, Salvatore, Davis, Theodore B., Dimalanta, Eileen T.
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
EM-seq: Detection of DNA Methylation at Single Base Resolution from Picograms of DNA
Vaisvila, Romualdas, V K Chaithanya Ponnaluri, Sun, Zhiyi, Langhorst, Bradley W, Saleh, Lana, Guan, Shengxi, Dai, Nan, Campbell, Matthew A, Sexton, Brittany S, Marks, Katherine, Samaranayake, Mala, Samuelson, James C, Church, Heidi E, Tamanaha, Esta, Corrêa, Ivan R, Pradhan, Sriharsa, Dimalanta, Eileen T, Evans, Thomas C, Williams, Louise, Davis, Theodore B
Published in bioRxiv (16.05.2020)
Published in bioRxiv (16.05.2020)
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Paper
Abstract 5360: DNA repair increases sequencing accuracy without altering actual mutation frequency in clinical samples
Liu, Pingfang, Chen, Lixin, Ettwiller, Laurence, Dimalanta, Eileen, Davis, Theodore B., Evans, Thomas C.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Abstract 4675: B-cell and T-cell repertoire sequencing enables somatic hypermutation and minimal residual disease assessment
Song, Chen, Liu, Pingfang, Barry, Andrew, Dimalanta, Eileen T., Stewart, Fiona J., Russello, Salvatore, Davis, Theodore B.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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