Quantifying the effect of experimental perturbations at single-cell resolution
Burkhardt, Daniel B., Stanley, Jay S., Tong, Alexander, Perdigoto, Ana Luisa, Gigante, Scott A., Herold, Kevan C., Wolf, Guy, Giraldez, Antonio J., van Dijk, David, Krishnaswamy, Smita
Published in Nature biotechnology (01.05.2021)
Published in Nature biotechnology (01.05.2021)
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Journal Article
scNAT: a deep learning method for integrating paired single-cell RNA and T cell receptor sequencing profiles
Zhu, Biqing, Wang, Yuge, Ku, Li-Ting, van Dijk, David, Zhang, Le, Hafler, David A, Zhao, Hongyu
Published in Genome Biology (18.12.2023)
Published in Genome Biology (18.12.2023)
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Journal Article
Loss of skeletal muscle during neoadjuvant chemotherapy is related to decreased survival in ovarian cancer patients
Rutten, Iris J.G., Dijk, David P.J., Kruitwagen, Roy F.P.M., Beets‐Tan, Regina G.H., Olde Damink, Steven W.M., Gorp, Toon
Published in Journal of cachexia, sarcopenia and muscle (01.09.2016)
Published in Journal of cachexia, sarcopenia and muscle (01.09.2016)
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Journal Article
Low skeletal muscle radiation attenuation and visceral adiposity are associated with overall survival and surgical site infections in patients with pancreatic cancer
Dijk, David P. J., Bakens, Maikel J. A. M., Coolsen, Mariëlle M. E., Rensen, Sander S., Dam, Ronald M., Bours, Martijn J. L., Weijenberg, Matty P., Dejong, Cornelis H. C., Olde Damink, Steven W. M.
Published in Journal of cachexia, sarcopenia and muscle (01.04.2017)
Published in Journal of cachexia, sarcopenia and muscle (01.04.2017)
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Journal Article
A neutrophil activation signature predicts critical illness and mortality in COVID-19
Meizlish, Matthew L., Pine, Alexander B., Bishai, Jason D., Goshua, George, Nadelmann, Emily R., Simonov, Michael, Chang, C-Hong, Zhang, Hanming, Shallow, Marcus, Bahel, Parveen, Owusu, Kent, Yamamoto, Yu, Arora, Tanima, Atri, Deepak S., Patel, Amisha, Gbyli, Rana, Kwan, Jennifer, Won, Christine H., Dela Cruz, Charles, Price, Christina, Koff, Jonathan, King, Brett A., Rinder, Henry M., Wilson, F. Perry, Hwa, John, Halene, Stephanie, Damsky, William, van Dijk, David, Lee, Alfred I., Chun, Hyung J.
Published in Blood advances (09.03.2021)
Published in Blood advances (09.03.2021)
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Journal Article
Muscle wasting associated co-morbidities, rather than sarcopenia are risk factors for hospital mortality in critical illness
Baggerman, Michelle R., van Dijk, David P.J., Winkens, Bjorn, van Gassel, Rob J.J., Bol, Martine E., Schnabel, Ronny M., Bakers, Frans C., Olde Damink, Steven W.M., van de Poll, Marcel C.G.
Published in Journal of critical care (01.04.2020)
Published in Journal of critical care (01.04.2020)
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Journal Article
Promoter sequence determines the relationship between expression level and noise
Carey, Lucas B, van Dijk, David, Sloot, Peter M A, Kaandorp, Jaap A, Segal, Eran
Published in PLoS biology (01.04.2013)
Published in PLoS biology (01.04.2013)
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Journal Article
Manifold learning-based methods for analyzing single-cell RNA-sequencing data
Moon, Kevin R., Stanley, Jay S., Burkhardt, Daniel, van Dijk, David, Wolf, Guy, Krishnaswamy, Smita
Published in Current opinion in systems biology (01.02.2018)
Published in Current opinion in systems biology (01.02.2018)
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Journal Article
Edema in critically ill patients leads to overestimation of skeletal muscle mass measurements using computed tomography scans
Baggerman, Michelle R., van Dijk, David P.J., Winkens, Bjorn, Schnabel, Ronny M., van Gassel, Rob J.J., Bol, Martine E., Bakers, Frans C., Olde Damink, Steven W.M., van de Poll, Marcel C.G.
Published in Nutrition (Burbank, Los Angeles County, Calif.) (01.09.2021)
Published in Nutrition (Burbank, Los Angeles County, Calif.) (01.09.2021)
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Journal Article
Circulating markers of angiogenesis and endotheliopathy in COVID-19
Pine, Alexander B., Meizlish, Matthew L., Goshua, George, Chang, C-Hong, Zhang, Hanming, Bishai, Jason, Bahel, Parveen, Patel, Amisha, Gbyli, Rana, Kwan, Jennifer M., Won, Christine H., Price, Christina, Dela Cruz, Charles S., Halene, Stephanie, van Dijk, David, Hwa, John, Lee, Alfred I., Chun, Hyung J.
Published in Pulmonary circulation (01.10.2020)
Published in Pulmonary circulation (01.10.2020)
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Journal Article
A No-Chest-Drain Policy After Video-assisted Thoracoscopic Surgery Wedge Resection in Selected Patients: Our 12-Year Experience
Laven, Iris E.W.G., Franssen, Aimée J.P.M., van Dijk, David P.J., Daemen, Jean H.T., Gronenschild, Michiel H.M., Hulsewé, Karel W.E., Vissers, Yvonne L.J., de Loos, Erik R.
Published in The Annals of thoracic surgery (01.04.2023)
Published in The Annals of thoracic surgery (01.04.2023)
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Journal Article
Generation and initial characterization of novel tumour organoid models to study human pancreatic cancer‐induced cachexia
Vaes, Rianne D.W., Dijk, David P.J., Welbers, Tessa T.J., Blok, Marinus J., Aberle, Merel R., Heij, Lara, Boj, Sylvia F., Olde Damink, Steven W.M., Rensen, Sander S.
Published in Journal of cachexia, sarcopenia and muscle (01.12.2020)
Published in Journal of cachexia, sarcopenia and muscle (01.12.2020)
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Journal Article
Myosteatosis is associated with poor physical fitness in patients undergoing hepatopancreatobiliary surgery
West, Malcolm A., Dijk, David P.J., Gleadowe, Fredrick, Reeves, Thomas, Primrose, John N., Abu Hilal, Mohammed, Edwards, Mark R., Jack, Sandy, Rensen, Sander S.S., Grocott, Michael P.W., Levett, Denny Z.H., Olde Damink, Steven W.M.
Published in Journal of cachexia, sarcopenia and muscle (01.08.2019)
Published in Journal of cachexia, sarcopenia and muscle (01.08.2019)
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Journal Article
Gut microbiota and short‐chain fatty acid alterations in cachectic cancer patients
Ubachs, Jorne, Ziemons, Janine, Soons, Zita, Aarnoutse, Romy, Dijk, David P.J., Penders, John, Helvoort, Ardy, Smidt, Marjolein L., Kruitwagen, Roy F.P.M., Baade‐Corpelijn, Lieke, Olde Damink, Steven W.M., Rensen, Sander S.
Published in Journal of cachexia, sarcopenia and muscle (01.12.2021)
Published in Journal of cachexia, sarcopenia and muscle (01.12.2021)
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Journal Article
Identifying radiomics signatures in body composition imaging for the prediction of outcome following pancreatic cancer resection
van der Kroft, Gregory, Wee, Leonard, Rensen, Sander S., Brecheisen, Ralph, van Dijk, David P. J., Eickhoff, Roman, Roeth, Anjali A., Ulmer, Florian T., Dekker, Andre, Neumann, Ulf P., Olde Damink, Steven W. M.
Published in Frontiers in oncology (10.08.2023)
Published in Frontiers in oncology (10.08.2023)
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Journal Article
ERAS: Improving outcome in the cachectic HPB patient
van Dijk, David P.J., van Woerden, Victor, Cakir, Hamit, den Dulk, Marcel, Olde Damink, Steven W.M., Dejong, Cornelis H.C.
Published in Journal of surgical oncology (01.10.2017)
Published in Journal of surgical oncology (01.10.2017)
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Journal Article
Inflammation‐associated intramyocellular lipid alterations in human pancreatic cancer cachexia
Deng, Min, Cao, Jianhua, Kroft, Gregory, Dijk, David P.J., Aberle, Merel R., Grgic, Andrej, Neumann, Ulf P., Wiltberger, Georg, Balluff, Benjamin, Schaap, Frank G., Heeren, Ron M.A., Olde Damink, Steven W.M., Rensen, Sander S.
Published in Journal of cachexia, sarcopenia and muscle (01.08.2024)
Published in Journal of cachexia, sarcopenia and muscle (01.08.2024)
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Journal Article
Human pancreatic tumour organoid‐derived factors enhance myogenic differentiation
Vaes, Rianne D.W., Dijk, David P.J., Farshadi, Elham Aïda, Olde Damink, Steven W.M., Rensen, Sander S., Langen, Ramon C.
Published in Journal of cachexia, sarcopenia and muscle (01.04.2022)
Published in Journal of cachexia, sarcopenia and muscle (01.04.2022)
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Journal Article
The Effect of 6 and 12 months Duodenal-Jejunal Bypass Liner Treatment on Obesity and Type 2 Diabetes: a Crossover Cohort Study
van Rijn, Selwyn, Betzel, Bark, de Jonge, Charlotte, van Dijk, David P. J., Janssen, Ignace M., Berends, Frits J., Bouvy, Nicole D., Greve, Jan Willem M.
Published in Obesity surgery (01.05.2018)
Published in Obesity surgery (01.05.2018)
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Journal Article
Ectopic fat in liver and skeletal muscle is associated with shorter overall survival in patients with colorectal liver metastases
Dijk, David P.J., Zhao, Junfang, Kemter, Katrin, Baracos, Vickie E., Dejong, Cornelis H.C., Rensen, Sander S., Olde Damink, Steven W.M.
Published in Journal of cachexia, sarcopenia and muscle (01.08.2021)
Published in Journal of cachexia, sarcopenia and muscle (01.08.2021)
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Journal Article