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Published in Nature communications (26.02.2020)
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Muscle-specific CRISPR/Cas9 dystrophin gene editing ameliorates pathophysiology in a mouse model for Duchenne muscular dystrophy
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Published in Nature communications (14.02.2017)
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Published in Nature (London) (19.02.2015)
Published in Nature (London) (19.02.2015)
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Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells
Xie, Wei, Schultz, Matthew D., Lister, Ryan, Hou, Zhonggang, Rajagopal, Nisha, Ray, Pradipta, Whitaker, John W., Tian, Shulan, Hawkins, R. David, Leung, Danny, Yang, Hongbo, Wang, Tao, Lee, Ah Young, Swanson, Scott A., Zhang, Jiuchun, Zhu, Yun, Kim, Audrey, Nery, Joseph R., Urich, Mark A., Kuan, Samantha, Yen, Chia-an, Klugman, Sarit, Yu, Pengzhi, Suknuntha, Kran, Propson, Nicholas E., Chen, Huaming, Edsall, Lee E., Wagner, Ulrich, Li, Yan, Ye, Zhen, Kulkarni, Ashwinikumar, Xuan, Zhenyu, Chung, Wen-Yu, Chi, Neil C., Antosiewicz-Bourget, Jessica E., Slukvin, Igor, Stewart, Ron, Zhang, Michael Q., Wang, Wei, Thomson, James A., Ecker, Joseph R., Ren, Bing
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The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition
Sperber, Henrik, Mathieu, Julie, Wang, Yuliang, Ferreccio, Amy, Hesson, Jennifer, Xu, Zhuojin, Fischer, Karin A., Devi, Arikketh, Detraux, Damien, Gu, Haiwei, Battle, Stephanie L., Showalter, Megan, Valensisi, Cristina, Bielas, Jason H., Ericson, Nolan G., Margaretha, Lilyana, Robitaille, Aaron M., Margineantu, Daciana, Fiehn, Oliver, Hockenbery, David, Blau, C. Anthony, Raftery, Daniel, Margolin, Adam A., Hawkins, R. David, Moon, Randall T., Ware, Carol B., Ruohola-Baker, Hannele
Published in Nature cell biology (01.12.2015)
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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells
Lister, Ryan, Pelizzola, Mattia, Kida, Yasuyuki S., Hawkins, R. David, Nery, Joseph R., Hon, Gary, Antosiewicz-Bourget, Jessica, O’Malley, Ronan, Castanon, Rosa, Klugman, Sarit, Downes, Michael, Yu, Ruth, Stewart, Ron, Ren, Bing, Thomson, James A., Evans, Ronald M., Ecker, Joseph R.
Published in Nature (London) (03.03.2011)
Published in Nature (London) (03.03.2011)
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Derivation of naïve human embryonic stem cells
Ware, Carol B., Nelson, Angelique M., Mecham, Brigham, Hesson, Jennifer, Zhou, Wenyu, Jonlin, Erica C., Jimenez-Caliani, Antonio J., Deng, Xinxian, Cavanaugh, Christopher, Cook, Savannah, Tesar, Paul J., Okada, Jeffrey, Margaretha, Lilyana, Sperber, Henrik, Choi, Michael, Balu, C. Anthony, Treuting, Piper M., Hawkins, R. David, Cirulli, Vincenzo, Ruohola-Baker, Hannele
Published in Proceedings of the National Academy of Sciences - PNAS (25.03.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (25.03.2014)
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Genetic Variability Overrides the Impact of Parental Cell Type and Determines iPSC Differentiation Potential
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Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
Hon, Gary C, Hawkins, R David, Caballero, Otavia L, Lo, Christine, Lister, Ryan, Pelizzola, Mattia, Valsesia, Armand, Ye, Zhen, Kuan, Samantha, Edsall, Lee E, Camargo, Anamaria Aranha, Stevenson, Brian J, Ecker, Joseph R, Bafna, Vineet, Strausberg, Robert L, Simpson, Andrew J, Ren, Bing
Published in Genome research (01.02.2012)
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Distinct Epigenomic Landscapes of Pluripotent and Lineage-Committed Human Cells
Hawkins, R. David, Hon, Gary C., Lee, Leonard K., Ngo, QueMinh, Lister, Ryan, Pelizzola, Mattia, Edsall, Lee E., Kuan, Samantha, Luu, Ying, Klugman, Sarit, Antosiewicz-Bourget, Jessica, Ye, Zhen, Espinoza, Celso, Agarwahl, Saurabh, Shen, Li, Ruotti, Victor, Wang, Wei, Stewart, Ron, Thomson, James A., Ecker, Joseph R., Ren, Bing
Published in Cell stem cell (07.05.2010)
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Histone modifications at human enhancers reflect global cell-type-specific gene expression
Ren, Bing, Heintzman, Nathaniel D, Hon, Gary C, Hawkins, R. David, Kheradpour, Pouya, Stark, Alexander, Harp, Lindsey F, Ye, Zhen, Lee, Leonard K, Stuart, Rhona K, Ching, Christina W, Ching, Keith A, Antosiewicz-Bourget, Jessica E, Liu, Hui, Zhang, Xinmin, Green, Roland D, Lobanenkov, Victor V, Stewart, Ron, Thomson, James A, Crawford, Gregory E, Kellis, Manolis
Published in Nature (07.05.2009)
Published in Nature (07.05.2009)
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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
Ren, Bing, Heintzman, Nathaniel D, Stuart, Rhona K, Hon, Gary, Fu, Yutao, Ching, Christina W, Hawkins, R David, Barrera, Leah O, Van Calcar, Sara, Qu, Chunxu, Ching, Keith A, Wang, Wei, Weng, Zhiping, Green, Roland D, Crawford, Gregory E
Published in Nature genetics (01.03.2007)
Published in Nature genetics (01.03.2007)
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Lysine-Specific Demethylase 1 (LSD1) epigenetically controls osteoblast differentiation
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Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation
Yu, Bo, Doni Jayavelu, Naresh, Battle, Stephanie L, Mar, Jessica C, Schimmel, Timothy, Cohen, Jacques, Hawkins, R David
Published in PloS one (05.11.2020)
Published in PloS one (05.11.2020)
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
Costello, Joseph F, Harris, R Alan, Wang, Ting, Coarfa, Cristian, Nagarajan, Raman P, Hong, Chibo, Downey, Sara L, Johnson, Brett E, Fouse, Shaun D, Delaney, Allen, Zhao, Yongjun, Olshen, Adam, Ballinger, Tracy, Zhou, Xin, Forsberg, Kevin J, Gu, Junchen, Echipare, Lorigail, O'Geen, Henriette, Lister, Ryan, Pelizzola, Mattia, Xi, Yuanxin, Epstein, Charles B, Bernstein, Bradley E, Hawkins, R David, Ren, Bing, Chung, Wen-Yu, Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Zhang, Michael Q, Haussler, David, Ecker, Joseph R, Li, Wei, Farnham, Peggy J, Waterland, Robert A, Meissner, Alexander, Marra, Marco A, Hirst, Martin, Milosavljevic, Aleksandar
Published in Nature biotechnology (01.10.2010)
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Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initiation of Human T helper 1 and T helper 2 Cell Polarization
Hawkins, R. David, Larjo, Antti, Tripathi, Subhash K., Wagner, Ulrich, Luu, Ying, Lönnberg, Tapio, Raghav, Sunil K., Lee, Leonard K., Lund, Riikka, Ren, Bing, Lähdesmäki, Harri, Lahesmaa, Riitta
Published in Immunity (Cambridge, Mass.) (27.06.2013)
Published in Immunity (Cambridge, Mass.) (27.06.2013)
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Methods for identifying higher-order chromatin structure
Sajan, Samin A, Hawkins, R David
Published in Annual review of genomics and human genetics (01.01.2012)
Published in Annual review of genomics and human genetics (01.01.2012)
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An Activating STAT3 Mutation Causes Neonatal Diabetes through Premature Induction of Pancreatic Differentiation
Saarimäki-Vire, Jonna, Balboa, Diego, Russell, Mark A., Saarikettu, Juha, Kinnunen, Matias, Keskitalo, Salla, Malhi, Amrinder, Valensisi, Cristina, Andrus, Colin, Eurola, Solja, Grym, Heli, Ustinov, Jarkko, Wartiovaara, Kirmo, Hawkins, R. David, Silvennoinen, Olli, Varjosalo, Markku, Morgan, Noel G., Otonkoski, Timo
Published in Cell reports (Cambridge) (11.04.2017)
Published in Cell reports (Cambridge) (11.04.2017)
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