TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs
Tan, Zhen, Fu, Yinghan, Sharma, Gaurav, Mathews, David H
Published in Nucleic acids research (16.11.2017)
Published in Nucleic acids research (16.11.2017)
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Journal Article
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search
Huang, Liang, Zhang, He, Deng, Dezhong, Zhao, Kai, Liu, Kaibo, Hendrix, David A, Mathews, David H
Published in Bioinformatics (15.07.2019)
Published in Bioinformatics (15.07.2019)
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Journal Article
RNAstructure: Web servers for RNA secondary structure prediction and analysis
Bellaousov, Stanislav, Reuter, Jessica S, Seetin, Matthew G, Mathews, David H
Published in Nucleic acids research (01.07.2013)
Published in Nucleic acids research (01.07.2013)
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Journal Article
CRISPR-Cas9-based mutagenesis frequently provokes on-target mRNA misregulation
Tuladhar, Rubina, Yeu, Yunku, Tyler Piazza, John, Tan, Zhen, Rene Clemenceau, Jean, Wu, Xiaofeng, Barrett, Quinn, Herbert, Jeremiah, Mathews, David H, Kim, James, Hyun Hwang, Tae, Lum, Lawrence
Published in Nature communications (06.09.2019)
Published in Nature communications (06.09.2019)
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Journal Article
Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects
Zuber, Jeffrey, Schroeder, Susan J, Sun, Hongying, Turner, Douglas H, Mathews, David H
Published in Nucleic acids research (20.05.2022)
Published in Nucleic acids research (20.05.2022)
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Journal Article
Accurate SHAPE-directed RNA structure determination
Deigan, Katherine E, Li, Tian W, Mathews, David H, Weeks, Kevin M
Published in Proceedings of the National Academy of Sciences - PNAS (06.01.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (06.01.2009)
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Journal Article
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
Hajdin, Christine E., Bellaousov, Stanislav, Huggins, Wayne, Leonard, Christopher W., Mathews, David H., Weeks, Kevin M.
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (02.04.2013)
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Journal Article
mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances
Lai, Wan-Jung C, Kayedkhordeh, Mohammad, Cornell, Erica V, Farah, Elie, Bellaousov, Stanislav, Rietmeijer, Robert, Salsi, Enea, Mathews, David H, Ermolenko, Dmitri N
Published in Nature communications (18.10.2018)
Published in Nature communications (18.10.2018)
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Journal Article
Making ends meet: New functions of mRNA secondary structure
Ermolenko, Dmitri N, Mathews, David H
Published in Wiley interdisciplinary reviews. RNA (01.03.2021)
Published in Wiley interdisciplinary reviews. RNA (01.03.2021)
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